ISHme2

  • Family IS4
  • Group ISH8
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001871 ND Haloferax mediterranei
Haloferax mediterranei ATCC 33500 plasmid pHM500
DNA section
IS Length : 1403 bp

Ends


IR Length : 18/19

IRL : CATCCGTCTTTAGCTAAGAGCAGAACCACGTGACAGCGACGGCTTATCGA
IRR : CATTCGTCTTTAGCTAAGACTTACACCTCGGTTGCGTAGCGGTAGCGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
ATAGACATCATGGCCCTCGAAGTT0

DNA sequence

CATCCGTCTTTAGCTAAGAGCAGAACCACGTGACAGCGACGGCTTATCGAGGCTTCTTTTCGAGAGGAATGAGGAGGCAACCGTTGTGCACACAGAAGCC
TCCTCATCGAGAATCATGCGTCGGCTTACTACACTGTTTCCCTCCGAGTTCCTCGAAGAGCACGCCGAGGAACTCGGCGTGGTCGAGCGAGAGGGCAAGC
TACAGGTTCCAGTCCTCGTGTGGGCGCTCGTGTTCGGCTTCGCCGCAGGTGAGAGCCGAACTCTCGCAGGGTTCAGACGCAGCTACAACTCCACGGCTGA
TGAGACGATTTTACCTGGCGGCTTCTATCACCGGTTGACGCCGACACTCGCGGAGTATCTCCGCGAGCTCGTCGAGCACGGCCTCGACGAGGTCGCTGTT
CCCGAGGCTGTTGACGCTGATATCGACCGATTCAGGGACGTGATGATCGCTGATGGAACGGTGTTGCGGTTGCACGAGTTCCTCTCTGATGAGTTCCAAG
CCCGTCACGAGGAGCAGGCTGGAGCGAAGCTCCACCTGCTCCACAATGCTACCGACGAGACGATTGAACGGATGGACGTGACGGACGAGAAAACGCACGA
CAGCACGCTGTTCAAGACGGGTTCGTGGCTGCAAGGACGGTTGGTTCTGCTCGATCTGGCGTATTTCAAGTACCGTCGCTTCGCGTTGATCGACGAGAAC
GACGGCTACTTCGTGAGTCGGCTGAAGCAGAACGCAAATCCGGTGATAACGGCGGAATTGCGGGAATGGCGCGGCCGCGCCATTCCCTTGGAGGGGAAGC
AGATCCACGATGTAGTCGATGACCTCTCGCGGAAGTACATCGACGTAGCGGTCGAAGCGGAGTTCAAACGTGGGCCGTACAACGGGACACGGTCGCTGGA
TACGAAGCGGTTCCGCGTCGTCGGCGTCCGTGACGAGGACGCAGACGACTACCACCTCTACATCACGAATCTCCCGAGAGAAGAGTTTCTCCCGGCGGAT
CTCTCAACGCTGTATCGGTGTCGCTGGGAAGTAGAGACGTTGTTTCGTGAGCTGAAGACGCAGTACGAGTTGGACGAGTTCGACACAAGCGACCCGGATG
TCGTGGAAATTTTGCTGTACGCGGCGTTGCTGTCACTGCTGGTGAGTCGTGAGCTGTTGGATCTGGTCACCGAGCAGGCCAACGATGAGATCGTATTTCC
GCCTGAACGCTGGGCGGCGACCTTCCGGTCGCACGCCCAGCTCATCCTCCACGAACTCGGTGAGTACCTCGGCTACTCGGCACCACCGTTGCTGGAGCGC
CTGATCGAAGACGCGCAGAAGATCCACAGGCAGCGACCAATCTTACAAGAGACGCTCGCTACCGCTACGCAACCGAGGTGTAAGTCTTAGCTAAAGACGA
ATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1275 bp424 aa1161390+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRRLTTLFPSEFLEEHAEELGVVEREGKLQVPVLVWALVFGFAAGESRTLAGFRRSYNSTADETILPGGFYHRLTPTLAEYLRELVEHGLDEVAVPEAVD
ADIDRFRDVMIADGTVLRLHEFLSDEFQARHEEQAGAKLHLLHNATDETIERMDVTDEKTHDSTLFKTGSWLQGRLVLLDLAYFKYRRFALIDENDGYFV
SRLKQNANPVITAELREWRGRAIPLEGKQIHDVVDDLSRKYIDVAVEAEFKRGPYNGTRSLDTKRFRVVGVRDEDADDYHLYITNLPREEFLPADLSTLY
RCRWEVETLFRELKTQYELDEFDTSDPDVVEILLYAALLSLLVSRELLDLVTEQANDEIVFPPERWAATFRSHAQLILHELGEYLGYSAPPLLERLIEDA
QKIHRQRPILQETLATATQPRCKS

 

Blast result :
Comments
ISHme2 is 96% aa similar to ISHma1.
IS_pep_1 is HFX_6339.
References
1] Pfeiffer, F. (2013) Direct submission
2] Han, J., Zhang, F., Hou, J., Liu, X., Li, M., Liu, H., Cai, L., Zhang, B., Chen, Y., Zhou, J., Hu, S., Xiang, H. (2012) J. Bacteriol. 194, 4463-4464