ISHme2
- Family IS4
- Group ISH8
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001871 | ND | Haloferax mediterranei | Haloferax mediterranei ATCC 33500 plasmid pHM500 |
DNA section
IS Length : 1403 bp
Ends
IR Length : 18/19
IRL : CATCCGTCTTTAGCTAAGAGCAGAACCACGTGACAGCGACGGCTTATCGA
IRR : CATTCGTCTTTAGCTAAGACTTACACCTCGGTTGCGTAGCGGTAGCGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATAGACATCATG | GCCCTCGAAGTT | 0 |
DNA sequence
CATCCGTCTTTAGCTAAGAGCAGAACCACGTGACAGCGACGGCTTATCGAGGCTTCTTTTCGAGAGGAATGAGGAGGCAACCGTTGTGCACACAGAAGCC
TCCTCATCGAGAATCATGCGTCGGCTTACTACACTGTTTCCCTCCGAGTTCCTCGAAGAGCACGCCGAGGAACTCGGCGTGGTCGAGCGAGAGGGCAAGC
TACAGGTTCCAGTCCTCGTGTGGGCGCTCGTGTTCGGCTTCGCCGCAGGTGAGAGCCGAACTCTCGCAGGGTTCAGACGCAGCTACAACTCCACGGCTGA
TGAGACGATTTTACCTGGCGGCTTCTATCACCGGTTGACGCCGACACTCGCGGAGTATCTCCGCGAGCTCGTCGAGCACGGCCTCGACGAGGTCGCTGTT
CCCGAGGCTGTTGACGCTGATATCGACCGATTCAGGGACGTGATGATCGCTGATGGAACGGTGTTGCGGTTGCACGAGTTCCTCTCTGATGAGTTCCAAG
CCCGTCACGAGGAGCAGGCTGGAGCGAAGCTCCACCTGCTCCACAATGCTACCGACGAGACGATTGAACGGATGGACGTGACGGACGAGAAAACGCACGA
CAGCACGCTGTTCAAGACGGGTTCGTGGCTGCAAGGACGGTTGGTTCTGCTCGATCTGGCGTATTTCAAGTACCGTCGCTTCGCGTTGATCGACGAGAAC
GACGGCTACTTCGTGAGTCGGCTGAAGCAGAACGCAAATCCGGTGATAACGGCGGAATTGCGGGAATGGCGCGGCCGCGCCATTCCCTTGGAGGGGAAGC
AGATCCACGATGTAGTCGATGACCTCTCGCGGAAGTACATCGACGTAGCGGTCGAAGCGGAGTTCAAACGTGGGCCGTACAACGGGACACGGTCGCTGGA
TACGAAGCGGTTCCGCGTCGTCGGCGTCCGTGACGAGGACGCAGACGACTACCACCTCTACATCACGAATCTCCCGAGAGAAGAGTTTCTCCCGGCGGAT
CTCTCAACGCTGTATCGGTGTCGCTGGGAAGTAGAGACGTTGTTTCGTGAGCTGAAGACGCAGTACGAGTTGGACGAGTTCGACACAAGCGACCCGGATG
TCGTGGAAATTTTGCTGTACGCGGCGTTGCTGTCACTGCTGGTGAGTCGTGAGCTGTTGGATCTGGTCACCGAGCAGGCCAACGATGAGATCGTATTTCC
GCCTGAACGCTGGGCGGCGACCTTCCGGTCGCACGCCCAGCTCATCCTCCACGAACTCGGTGAGTACCTCGGCTACTCGGCACCACCGTTGCTGGAGCGC
CTGATCGAAGACGCGCAGAAGATCCACAGGCAGCGACCAATCTTACAAGAGACGCTCGCTACCGCTACGCAACCGAGGTGTAAGTCTTAGCTAAAGACGA
ATG
TCCTCATCGAGAATCATGCGTCGGCTTACTACACTGTTTCCCTCCGAGTTCCTCGAAGAGCACGCCGAGGAACTCGGCGTGGTCGAGCGAGAGGGCAAGC
TACAGGTTCCAGTCCTCGTGTGGGCGCTCGTGTTCGGCTTCGCCGCAGGTGAGAGCCGAACTCTCGCAGGGTTCAGACGCAGCTACAACTCCACGGCTGA
TGAGACGATTTTACCTGGCGGCTTCTATCACCGGTTGACGCCGACACTCGCGGAGTATCTCCGCGAGCTCGTCGAGCACGGCCTCGACGAGGTCGCTGTT
CCCGAGGCTGTTGACGCTGATATCGACCGATTCAGGGACGTGATGATCGCTGATGGAACGGTGTTGCGGTTGCACGAGTTCCTCTCTGATGAGTTCCAAG
CCCGTCACGAGGAGCAGGCTGGAGCGAAGCTCCACCTGCTCCACAATGCTACCGACGAGACGATTGAACGGATGGACGTGACGGACGAGAAAACGCACGA
CAGCACGCTGTTCAAGACGGGTTCGTGGCTGCAAGGACGGTTGGTTCTGCTCGATCTGGCGTATTTCAAGTACCGTCGCTTCGCGTTGATCGACGAGAAC
GACGGCTACTTCGTGAGTCGGCTGAAGCAGAACGCAAATCCGGTGATAACGGCGGAATTGCGGGAATGGCGCGGCCGCGCCATTCCCTTGGAGGGGAAGC
AGATCCACGATGTAGTCGATGACCTCTCGCGGAAGTACATCGACGTAGCGGTCGAAGCGGAGTTCAAACGTGGGCCGTACAACGGGACACGGTCGCTGGA
TACGAAGCGGTTCCGCGTCGTCGGCGTCCGTGACGAGGACGCAGACGACTACCACCTCTACATCACGAATCTCCCGAGAGAAGAGTTTCTCCCGGCGGAT
CTCTCAACGCTGTATCGGTGTCGCTGGGAAGTAGAGACGTTGTTTCGTGAGCTGAAGACGCAGTACGAGTTGGACGAGTTCGACACAAGCGACCCGGATG
TCGTGGAAATTTTGCTGTACGCGGCGTTGCTGTCACTGCTGGTGAGTCGTGAGCTGTTGGATCTGGTCACCGAGCAGGCCAACGATGAGATCGTATTTCC
GCCTGAACGCTGGGCGGCGACCTTCCGGTCGCACGCCCAGCTCATCCTCCACGAACTCGGTGAGTACCTCGGCTACTCGGCACCACCGTTGCTGGAGCGC
CTGATCGAAGACGCGCAGAAGATCCACAGGCAGCGACCAATCTTACAAGAGACGCTCGCTACCGCTACGCAACCGAGGTGTAAGTCTTAGCTAAAGACGA
ATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 116 | 1390 | + | No |
Chemistry : DDE
ORF sequence :
MRRLTTLFPSEFLEEHAEELGVVEREGKLQVPVLVWALVFGFAAGESRTLAGFRRSYNSTADETILPGGFYHRLTPTLAEYLRELVEHGLDEVAVPEAVD
ADIDRFRDVMIADGTVLRLHEFLSDEFQARHEEQAGAKLHLLHNATDETIERMDVTDEKTHDSTLFKTGSWLQGRLVLLDLAYFKYRRFALIDENDGYFV
SRLKQNANPVITAELREWRGRAIPLEGKQIHDVVDDLSRKYIDVAVEAEFKRGPYNGTRSLDTKRFRVVGVRDEDADDYHLYITNLPREEFLPADLSTLY
RCRWEVETLFRELKTQYELDEFDTSDPDVVEILLYAALLSLLVSRELLDLVTEQANDEIVFPPERWAATFRSHAQLILHELGEYLGYSAPPLLERLIEDA
QKIHRQRPILQETLATATQPRCKS
ADIDRFRDVMIADGTVLRLHEFLSDEFQARHEEQAGAKLHLLHNATDETIERMDVTDEKTHDSTLFKTGSWLQGRLVLLDLAYFKYRRFALIDENDGYFV
SRLKQNANPVITAELREWRGRAIPLEGKQIHDVVDDLSRKYIDVAVEAEFKRGPYNGTRSLDTKRFRVVGVRDEDADDYHLYITNLPREEFLPADLSTLY
RCRWEVETLFRELKTQYELDEFDTSDPDVVEILLYAALLSLLVSRELLDLVTEQANDEIVFPPERWAATFRSHAQLILHELGEYLGYSAPPLLERLIEDA
QKIHRQRPILQETLATATQPRCKS
Blast result :
Comments
ISHme2 is 96% aa similar to ISHma1.
IS_pep_1 is HFX_6339.
IS_pep_1 is HFX_6339.
References
1] Pfeiffer, F. (2013) Direct submission
2] Han, J., Zhang, F., Hou, J., Liu, X., Li, M., Liu, H., Cai, L., Zhang, B., Chen, Y., Zhou, J., Hu, S., Xiang, H. (2012) J. Bacteriol. 194, 4463-4464
2] Han, J., Zhang, F., Hou, J., Liu, X., Li, M., Liu, H., Cai, L., Zhang, B., Chen, Y., Zhou, J., Hu, S., Xiang, H. (2012) J. Bacteriol. 194, 4463-4464