ISHla7
- Family IS5
- Group ISH1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP001366 | ND | Halorubrum lacusprofundi | Halorubrum lacusprofundi ATCC 49239 chromosome 2 |
DNA section
IS Length : 889 bp
Ends
IR Length : 15/24
IRL : GGCTCTGTTGAAATCCTCAGAGAGTTACAGATTCGCTTGGTAGTCTGACT
IRR : CCCTATATTGAACGTTCAGAGTGCCTTGTCGATGTTGTGAGTGAGACAGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCGGATTTGT | TATCCAATGA | 0 |
DNA sequence
GGCTCTGTTGAAATCCTCAGAGAGTTACAGATTCGCTTGGTAGTCTGACTGGATGGAAGCTCTCCCGAAGTCGCGGTTACTCAGGTTCGTTGAGCAAGCG
ATGCACTTGGCTCGGCGAGCTGTCGCTCGTTACTCGTCGAAGTTCTCGAAACGGCGGTACACACTTCATCAACACATCGTCCTGCTCTGTCTCAAGGTTC
GGAAGAATACGACGTACCGGACGCTTCTGGACGAACTTATCGAGATGCCTCGGATTCGAAGCGCCATCGATCTTGAGGAACTCCCGTCTCCTTCGACATT
GTGTAAGGCGTTTAACCGCCTTGGTATGGCTGTTTGGCGGGTTCTTCTCAATCTCTCAGTCACGCTTCTCCCGACCAACGGTGTCGTCGGGATCGACGCC
TCTGGATTCGACCGCAGTCACGCCTCTAAGCACTACACGAAACGAACGAAGCTGACGATTCAACAGTTGAAAGTTACACTTCTCGTGGACACGAGAGTGA
ATGCAATCATTGACTTACACGTGACGACGACCAGAAAGCACGACTCGAAGATCGCACCTTCGCTAATCAGGCGGAATACGGATGACGTAACGATTCTCCT
CGGTGACAAGGGATATGACGACCAGAAGATTCGCACGTTAGCCCGTGAAGATGGTGTTCGTCCGGTCATCAAGCATCGAGGATTTTCGTCGCTTCACAAG
GCGTGGAACGTTCGGCTGGACGCCGACATCCACGGGCAACGGAGTCAGAACGAGACGGTGAACTCTCGTATTAAACGGAAATATGGCGAATTCGTCCGCT
CACGACGTTGGTGGAAGCAGTTTCGTGAACTCGTTGTCGGCTGTCTCACTCACAACATCGACAAGGCACTCTGAACGTTCAATATAGGG
ATGCACTTGGCTCGGCGAGCTGTCGCTCGTTACTCGTCGAAGTTCTCGAAACGGCGGTACACACTTCATCAACACATCGTCCTGCTCTGTCTCAAGGTTC
GGAAGAATACGACGTACCGGACGCTTCTGGACGAACTTATCGAGATGCCTCGGATTCGAAGCGCCATCGATCTTGAGGAACTCCCGTCTCCTTCGACATT
GTGTAAGGCGTTTAACCGCCTTGGTATGGCTGTTTGGCGGGTTCTTCTCAATCTCTCAGTCACGCTTCTCCCGACCAACGGTGTCGTCGGGATCGACGCC
TCTGGATTCGACCGCAGTCACGCCTCTAAGCACTACACGAAACGAACGAAGCTGACGATTCAACAGTTGAAAGTTACACTTCTCGTGGACACGAGAGTGA
ATGCAATCATTGACTTACACGTGACGACGACCAGAAAGCACGACTCGAAGATCGCACCTTCGCTAATCAGGCGGAATACGGATGACGTAACGATTCTCCT
CGGTGACAAGGGATATGACGACCAGAAGATTCGCACGTTAGCCCGTGAAGATGGTGTTCGTCCGGTCATCAAGCATCGAGGATTTTCGTCGCTTCACAAG
GCGTGGAACGTTCGGCTGGACGCCGACATCCACGGGCAACGGAGTCAGAACGAGACGGTGAACTCTCGTATTAAACGGAAATATGGCGAATTCGTCCGCT
CACGACGTTGGTGGAAGCAGTTTCGTGAACTCGTTGTCGGCTGTCTCACTCACAACATCGACAAGGCACTCTGAACGTTCAATATAGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 822 bp | 273 aa | 53 | 874 | + | No |
Chemistry : DDE
ORF sequence :
MEALPKSRLLRFVEQAMHLARRAVARYSSKFSKRRYTLHQHIVLLCLKVRKNTTYRTLLDELIEMPRIRSAIDLEELPSPSTLCKAFNRLGMAVWRVLLN
LSVTLLPTNGVVGIDASGFDRSHASKHYTKRTKLTIQQLKVTLLVDTRVNAIIDLHVTTTRKHDSKIAPSLIRRNTDDVTILLGDKGYDDQKIRTLARED
GVRPVIKHRGFSSLHKAWNVRLDADIHGQRSQNETVNSRIKRKYGEFVRSRRWWKQFRELVVGCLTHNIDKAL
LSVTLLPTNGVVGIDASGFDRSHASKHYTKRTKLTIQQLKVTLLVDTRVNAIIDLHVTTTRKHDSKIAPSLIRRNTDDVTILLGDKGYDDQKIRTLARED
GVRPVIKHRGFSSLHKAWNVRLDADIHGQRSQNETVNSRIKRKYGEFVRSRRWWKQFRELVVGCLTHNIDKAL
Blast result :
Comments
ISHla7 is 94% aa similar to ISHvo2.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission GenBank.