ISDpr9
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ADZZ01000580 | ND | Delta proteobacterium | Delta proteobacterium NaphS2 |
DNA section
IS Length : 1309 bp
Ends
IR Length : 27/31
IRL : GTCAATGGAAATAAATAACTCATCGGATTTTACTTGATCCAAAGTACGAA
IRR : GGCAGTGGAAATAAATAAATCATCGGTTTTTGATAATATAATTCCACTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGCTTTCCC | TTA | GCCATATTTA | 3 |
DNA sequence
GTCAATGGAAATAAATAACTCATCGGATTTTACTTGATCCAAAGTACGAACAAGTGTCATCCATGAGGCATGATTTCTACAGACGTGATCGATACCTTAA
AGATAAAATATGACGCCTTGAACTCCGAACTTGATGAAAGGGCGCGTCGATTGTGGGCTGCCACCGAAGCATCTTCAATTGGCCATGGCGGAGTAAGCGC
GGTTTCCAGAGCTACCGGCATGGCGGAAAGCACGATAAGAACCGGTTGCCGAGAAATAACGAGTGGTAAGAAAGAAACAGCGAGCCGAAGATTAAGAAAA
AAAGGTGGAGGAAGAAAGCCTCTTGTTGAAAAAGACGGAGAATTACTTAATCTCCTTGATGCATTGGTCGAACCAACTTCAAGAGGCGATCCGATGTCTC
CGCTCAGATGGACTTGCAAAAGCACGCGTCGTTTGGCGGAGGAATTGACAAAAAGCGGACACCCTGTCAGCCATGCCAAAGTCGGCCAATTACTCGCTGC
GTTGGATTATAGCCTACAGGGAACGCGGAAAAGGATGGAAGGAAAATCCCATCCCGACCGAAACGCCCAATTTGAATTTATTTACAACAAAGTGAAGGAG
TTTCAGAAACGAAAACAGCCTGTGATTTCCGTTGATACCAAAAAGAAAGAATTGATAGGTCGTTTTACAAACGGAGGATATGAGTACCAGCCAAAAGGAA
AACCCGAAGAAGTGGAGACATATGATTTTCCAAGTATGGCTGACGGCAAAGGAATCCCGTATGGCGTTTACGACATGGGCAAAAATATGGGATGGGTCAG
TGTCGGAACGGATCACGATACTGCCGATACTGCCCAATTTGCGGTGCATACTATCCGACAGTGGTGGTTTCAAATGGGTTTGGAGGCATATCCTCGATCA
AAAGAACTTCTGATAACCGCAGATGGCGGAGGGAGTAACGGTTCACGTAATCGGCTGTGGAAATATGAACTTCAACGTTTTGCGGACGAAACACAACTCG
CCGTCAATGTATGCCATTTCCCTCCGGGAACAAGCAAGTGGAACAAGATTGAACACCAAATGTTTTCTCATATTACAAAAAACTGGAGGGGACGTCCGCT
TACAAGCCATGAAGTGATTGTCAACCTGATAGCAAGCACAACGACTGAAACCGGTCTGAAAATCAACGCGAAGTTGGATTCAAATGAATACCCAACCGGA
ATTAAAATCCCAGACAAGAAGATAAAAGAACTGAATTTGATAAAAGATAAGTTTCATGGGGAGTGGAATTATATTATCAAAAACCGATGATTTATTTATT
TCCACTGCC
AGATAAAATATGACGCCTTGAACTCCGAACTTGATGAAAGGGCGCGTCGATTGTGGGCTGCCACCGAAGCATCTTCAATTGGCCATGGCGGAGTAAGCGC
GGTTTCCAGAGCTACCGGCATGGCGGAAAGCACGATAAGAACCGGTTGCCGAGAAATAACGAGTGGTAAGAAAGAAACAGCGAGCCGAAGATTAAGAAAA
AAAGGTGGAGGAAGAAAGCCTCTTGTTGAAAAAGACGGAGAATTACTTAATCTCCTTGATGCATTGGTCGAACCAACTTCAAGAGGCGATCCGATGTCTC
CGCTCAGATGGACTTGCAAAAGCACGCGTCGTTTGGCGGAGGAATTGACAAAAAGCGGACACCCTGTCAGCCATGCCAAAGTCGGCCAATTACTCGCTGC
GTTGGATTATAGCCTACAGGGAACGCGGAAAAGGATGGAAGGAAAATCCCATCCCGACCGAAACGCCCAATTTGAATTTATTTACAACAAAGTGAAGGAG
TTTCAGAAACGAAAACAGCCTGTGATTTCCGTTGATACCAAAAAGAAAGAATTGATAGGTCGTTTTACAAACGGAGGATATGAGTACCAGCCAAAAGGAA
AACCCGAAGAAGTGGAGACATATGATTTTCCAAGTATGGCTGACGGCAAAGGAATCCCGTATGGCGTTTACGACATGGGCAAAAATATGGGATGGGTCAG
TGTCGGAACGGATCACGATACTGCCGATACTGCCCAATTTGCGGTGCATACTATCCGACAGTGGTGGTTTCAAATGGGTTTGGAGGCATATCCTCGATCA
AAAGAACTTCTGATAACCGCAGATGGCGGAGGGAGTAACGGTTCACGTAATCGGCTGTGGAAATATGAACTTCAACGTTTTGCGGACGAAACACAACTCG
CCGTCAATGTATGCCATTTCCCTCCGGGAACAAGCAAGTGGAACAAGATTGAACACCAAATGTTTTCTCATATTACAAAAAACTGGAGGGGACGTCCGCT
TACAAGCCATGAAGTGATTGTCAACCTGATAGCAAGCACAACGACTGAAACCGGTCTGAAAATCAACGCGAAGTTGGATTCAAATGAATACCCAACCGGA
ATTAAAATCCCAGACAAGAAGATAAAAGAACTGAATTTGATAAAAGATAAGTTTCATGGGGAGTGGAATTATATTATCAAAAACCGATGATTTATTTATT
TCCACTGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1221 bp | 406 aa | 70 | 1290 | + | No |
Chemistry : Unknow
ORF sequence :
MISTDVIDTLKIKYDALNSELDERARRLWAATEASSIGHGGVSAVSRATGMAESTIRTGCREITSGKKETASRRLRKKGGGRKPLVEKDGELLNLLDALV
EPTSRGDPMSPLRWTCKSTRRLAEELTKSGHPVSHAKVGQLLAALDYSLQGTRKRMEGKSHPDRNAQFEFIYNKVKEFQKRKQPVISVDTKKKELIGRFT
NGGYEYQPKGKPEEVETYDFPSMADGKGIPYGVYDMGKNMGWVSVGTDHDTADTAQFAVHTIRQWWFQMGLEAYPRSKELLITADGGGSNGSRNRLWKYE
LQRFADETQLAVNVCHFPPGTSKWNKIEHQMFSHITKNWRGRPLTSHEVIVNLIASTTTETGLKINAKLDSNEYPTGIKIPDKKIKELNLIKDKFHGEWN
YIIKNR
EPTSRGDPMSPLRWTCKSTRRLAEELTKSGHPVSHAKVGQLLAALDYSLQGTRKRMEGKSHPDRNAQFEFIYNKVKEFQKRKQPVISVDTKKKELIGRFT
NGGYEYQPKGKPEEVETYDFPSMADGKGIPYGVYDMGKNMGWVSVGTDHDTADTAQFAVHTIRQWWFQMGLEAYPRSKELLITADGGGSNGSRNRLWKYE
LQRFADETQLAVNVCHFPPGTSKWNKIEHQMFSHITKNWRGRPLTSHEVIVNLIASTTTETGLKINAKLDSNEYPTGIKIPDKKIKELNLIKDKFHGEWN
YIIKNR
Blast result :
Comments
ISDpr9 is 74% aa similar to ISDpr7.
References
1] ISfinder annotation (2013)
2] DeBoy,R., Durkin,A.S., Methe,B. and Young,N. (2010) Direct submission GenBank.
2] DeBoy,R., Durkin,A.S., Methe,B. and Young,N. (2010) Direct submission GenBank.