ISDpr9

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ADZZ01000580 ND Delta proteobacterium
Delta proteobacterium NaphS2
DNA section
IS Length : 1309 bp

Ends


IR Length : 27/31

IRL : GTCAATGGAAATAAATAACTCATCGGATTTTACTTGATCCAAAGTACGAA
IRR : GGCAGTGGAAATAAATAAATCATCGGTTTTTGATAATATAATTCCACTCC

Insertion site


Left flankDirect repeatRight flankDR Length
CAGCTTTCCCTTAGCCATATTTA3

DNA sequence

GTCAATGGAAATAAATAACTCATCGGATTTTACTTGATCCAAAGTACGAACAAGTGTCATCCATGAGGCATGATTTCTACAGACGTGATCGATACCTTAA
AGATAAAATATGACGCCTTGAACTCCGAACTTGATGAAAGGGCGCGTCGATTGTGGGCTGCCACCGAAGCATCTTCAATTGGCCATGGCGGAGTAAGCGC
GGTTTCCAGAGCTACCGGCATGGCGGAAAGCACGATAAGAACCGGTTGCCGAGAAATAACGAGTGGTAAGAAAGAAACAGCGAGCCGAAGATTAAGAAAA
AAAGGTGGAGGAAGAAAGCCTCTTGTTGAAAAAGACGGAGAATTACTTAATCTCCTTGATGCATTGGTCGAACCAACTTCAAGAGGCGATCCGATGTCTC
CGCTCAGATGGACTTGCAAAAGCACGCGTCGTTTGGCGGAGGAATTGACAAAAAGCGGACACCCTGTCAGCCATGCCAAAGTCGGCCAATTACTCGCTGC
GTTGGATTATAGCCTACAGGGAACGCGGAAAAGGATGGAAGGAAAATCCCATCCCGACCGAAACGCCCAATTTGAATTTATTTACAACAAAGTGAAGGAG
TTTCAGAAACGAAAACAGCCTGTGATTTCCGTTGATACCAAAAAGAAAGAATTGATAGGTCGTTTTACAAACGGAGGATATGAGTACCAGCCAAAAGGAA
AACCCGAAGAAGTGGAGACATATGATTTTCCAAGTATGGCTGACGGCAAAGGAATCCCGTATGGCGTTTACGACATGGGCAAAAATATGGGATGGGTCAG
TGTCGGAACGGATCACGATACTGCCGATACTGCCCAATTTGCGGTGCATACTATCCGACAGTGGTGGTTTCAAATGGGTTTGGAGGCATATCCTCGATCA
AAAGAACTTCTGATAACCGCAGATGGCGGAGGGAGTAACGGTTCACGTAATCGGCTGTGGAAATATGAACTTCAACGTTTTGCGGACGAAACACAACTCG
CCGTCAATGTATGCCATTTCCCTCCGGGAACAAGCAAGTGGAACAAGATTGAACACCAAATGTTTTCTCATATTACAAAAAACTGGAGGGGACGTCCGCT
TACAAGCCATGAAGTGATTGTCAACCTGATAGCAAGCACAACGACTGAAACCGGTCTGAAAATCAACGCGAAGTTGGATTCAAATGAATACCCAACCGGA
ATTAAAATCCCAGACAAGAAGATAAAAGAACTGAATTTGATAAAAGATAAGTTTCATGGGGAGTGGAATTATATTATCAAAAACCGATGATTTATTTATT
TCCACTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1221 bp406 aa701290+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MISTDVIDTLKIKYDALNSELDERARRLWAATEASSIGHGGVSAVSRATGMAESTIRTGCREITSGKKETASRRLRKKGGGRKPLVEKDGELLNLLDALV
EPTSRGDPMSPLRWTCKSTRRLAEELTKSGHPVSHAKVGQLLAALDYSLQGTRKRMEGKSHPDRNAQFEFIYNKVKEFQKRKQPVISVDTKKKELIGRFT
NGGYEYQPKGKPEEVETYDFPSMADGKGIPYGVYDMGKNMGWVSVGTDHDTADTAQFAVHTIRQWWFQMGLEAYPRSKELLITADGGGSNGSRNRLWKYE
LQRFADETQLAVNVCHFPPGTSKWNKIEHQMFSHITKNWRGRPLTSHEVIVNLIASTTTETGLKINAKLDSNEYPTGIKIPDKKIKELNLIKDKFHGEWN
YIIKNR

 

Blast result :
Comments
ISDpr9 is 74% aa similar to ISDpr7.
References
1] ISfinder annotation (2013)
2] DeBoy,R., Durkin,A.S., Methe,B. and Young,N. (2010) Direct submission GenBank.