IS4Sa2
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB001339 | ND | Synechocystis sp. | Synechocystis sp. PCC6803 |
DNA section
IS Length : 1416 bp
Ends
IR Length : 18/19
IRL : ATCGCTCTTCTATCATTGTGGGTAGGATAAAATGGAGAAGATAGTCTGAA
IRR : TDTATCGCTCTTCTATCAGTGTAGGTGGGAAGGTAAAATAATTGGAGCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
ATCGCTCTTCTATCATTGTGGGTAGGATAAAATGGAGAAGATAGTCTGAAATGCAGAGGTGGTATATGGTTGCCCACGTGAAGCAAAAGAAACAGTACAA
TTCATTGACAAATACTGCGAAGGATACAGAGACTTATTTTATTTCCAGAAGTGAGAAGCTTTGAATACTTGCATCTAGGATTAATTGCGAATATCAAGAG
AAAAACCTTCCCAGAAATAGCTAAGGTAGTAGGACTAGAAAATGGACAAGGATTTGACTATTTCTTCGGTAAAAGCCCTTGGTTGTTAGAGGAGGTGAGG
GAAAGAAGAATTAATAAAATTCTGAGTTTTGCGGAAGGAGAAGCAATAACAATGCTCATAGACGAAACAGGGGATAGGAAAAAAGGAAGAAAGACAGATT
ATGTTGCGCGTCAGTATATTGGCAATCTAGGAAAAATAGAAAATGGAATAGTAGAGGTGATGTGTTATGGAATTATAAAGGGAATGACAGTACCATTAAT
CAGCAAAGTATATAAATCAGAGACAAGACTAAAAGAGGGGGATAAATACAAAAGTAAACCAGAGATAGCAGGGGAAATTATCAAAGAAATAAAAGAGCTT
GGTTTCAATATAAAGGTAGTACTAGCAGATAGTGAATATGGAGAGAGCAGCGAAAACTTTGTAAGAGTATTAGAAAAAGAAAATCTAGAATATGTACTAG
CTATAAGGAGTAATCATGGAGTCTGGCTTGGGAAAGAGGAAAGAGTAAGAGCGAACAAATGGGGAAAATTTGAGAGAGAATTTGCAAGTGGAAAGTCGGA
AATAAGATACGTGAGAGAAATTATTTATGGAAAGAGAGGGGAAAAAAGATATTGGCAAGTAACGAATAACAAGGAGAAAATGCCGTCAAATTCAACGTAT
TGTATTATGACAAAAGTATCAGAAATAAAATATAAAGAAGTGGGTAACTTATATGGAGCAAGGAACTGGATAGAGTATGGATTAAAGCAAATAAAGAATG
AACTGGAGTGGGCAGATTTTAGAATGATGGACTATTCCAGAATAGAAAAATGGCGGGAAATAGTGATGAGCGTATATTTAATGGCAAGTCTTCAGATAGA
AAATTTGCCTCCGCATGATAACTCCTTAAACAAATCAAAACAGACTAGGGAGATAGCTTATCAGAATATACAAAAACATCCTTGGTGGAATCAAAAAGTG
GATGGAAAAACATACTTAACAACATGAGATTAATAATTCACCCATTATGTTACTTTAATTTATTAAAGCGGTTGATGACGGTGATTTATACACCTCAGTT
ATTGAGAAACTTCCATTGCTTATTTGACAAATTGAAGAAGGCAGTAATGGCCTTAGGAGACCTTATTATTGCTCCAATTATTTTACCTTCCCACCTACAC
TGATAGAAGAGCGATADA
TTCATTGACAAATACTGCGAAGGATACAGAGACTTATTTTATTTCCAGAAGTGAGAAGCTTTGAATACTTGCATCTAGGATTAATTGCGAATATCAAGAG
AAAAACCTTCCCAGAAATAGCTAAGGTAGTAGGACTAGAAAATGGACAAGGATTTGACTATTTCTTCGGTAAAAGCCCTTGGTTGTTAGAGGAGGTGAGG
GAAAGAAGAATTAATAAAATTCTGAGTTTTGCGGAAGGAGAAGCAATAACAATGCTCATAGACGAAACAGGGGATAGGAAAAAAGGAAGAAAGACAGATT
ATGTTGCGCGTCAGTATATTGGCAATCTAGGAAAAATAGAAAATGGAATAGTAGAGGTGATGTGTTATGGAATTATAAAGGGAATGACAGTACCATTAAT
CAGCAAAGTATATAAATCAGAGACAAGACTAAAAGAGGGGGATAAATACAAAAGTAAACCAGAGATAGCAGGGGAAATTATCAAAGAAATAAAAGAGCTT
GGTTTCAATATAAAGGTAGTACTAGCAGATAGTGAATATGGAGAGAGCAGCGAAAACTTTGTAAGAGTATTAGAAAAAGAAAATCTAGAATATGTACTAG
CTATAAGGAGTAATCATGGAGTCTGGCTTGGGAAAGAGGAAAGAGTAAGAGCGAACAAATGGGGAAAATTTGAGAGAGAATTTGCAAGTGGAAAGTCGGA
AATAAGATACGTGAGAGAAATTATTTATGGAAAGAGAGGGGAAAAAAGATATTGGCAAGTAACGAATAACAAGGAGAAAATGCCGTCAAATTCAACGTAT
TGTATTATGACAAAAGTATCAGAAATAAAATATAAAGAAGTGGGTAACTTATATGGAGCAAGGAACTGGATAGAGTATGGATTAAAGCAAATAAAGAATG
AACTGGAGTGGGCAGATTTTAGAATGATGGACTATTCCAGAATAGAAAAATGGCGGGAAATAGTGATGAGCGTATATTTAATGGCAAGTCTTCAGATAGA
AAATTTGCCTCCGCATGATAACTCCTTAAACAAATCAAAACAGACTAGGGAGATAGCTTATCAGAATATACAAAAACATCCTTGGTGGAATCAAAAAGTG
GATGGAAAAACATACTTAACAACATGAGATTAATAATTCACCCATTATGTTACTTTAATTTATTAAAGCGGTTGATGACGGTGATTTATACACCTCAGTT
ATTGAGAAACTTCCATTGCTTATTTGACAAATTGAAGAAGGCAGTAATGGCCTTAGGAGACCTTATTATTGCTCCAATTATTTTACCTTCCCACCTACAC
TGATAGAAGAGCGATADA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1077 bp | 358 aa | 151 | 1227 | + | No |
Description :
ORF sequence :
MRSFEYLHLGLIANIKRKTFPEIAKVVGLENGQGFDYFFGKSPWLLEEVRERRINKILSFAEGEAITMLIDETGDRKKGRKTDYVARQYIGNLGKIENGI
VEVMCYGIIKGMTVPLISKVYKSETRLKEGDKYKSKPEIAGEIIKEIKELGFNIKVVLADSEYGESSENFVRVLEKENLEYVLAIRSNHGVWLGKEERVR
ANKWGKFEREFASGKSEIRYVREIIYGKRGEKRYWQVTNNKEKMPSNSTYCIMTKVSEIKYKEVGNLYGARNWIEYGLKQIKNELEWADFRMMDYSRIEK
WREIVMSVYLMASLQIENLPPHDNSLNKSKQTREIAYQNIQKHPWWNQKVDGKTYLTTDA
VEVMCYGIIKGMTVPLISKVYKSETRLKEGDKYKSKPEIAGEIIKEIKELGFNIKVVLADSEYGESSENFVRVLEKENLEYVLAIRSNHGVWLGKEERVR
ANKWGKFEREFASGKSEIRYVREIIYGKRGEKRYWQVTNNKEKMPSNSTYCIMTKVSEIKYKEVGNLYGARNWIEYGLKQIKNELEWADFRMMDYSRIEK
WREIVMSVYLMASLQIENLPPHDNSLNKSKQTREIAYQNIQKHPWWNQKVDGKTYLTTDA
Blast result :
Comments
See Synechocystis sp. Genome (cf. genome section in ISDatabase).
References
1]Kaneko,T., Sato,S., Kotani,H., Tanaka,A., Asamizu,E., Nakamura,Y., Miyajima,N., Hirosawa,M., Sugiura,M., Sasamoto,S., Kimura,T., Hosouchi,T., Matsuno,A., Muraki,A., Nakazaki,N., Naruo,K., Okumura,S., Shimpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S.(1996) DNA Res. 3 (3), 109-136