IS4Sa2

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB001339 ND Synechocystis sp.
Synechocystis sp. PCC6803
DNA section
IS Length : 1416 bp

Ends


IR Length : 18/19

IRL : ATCGCTCTTCTATCATTGTGGGTAGGATAAAATGGAGAAGATAGTCTGAA
IRR : TDTATCGCTCTTCTATCAGTGTAGGTGGGAAGGTAAAATAATTGGAGCAA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

ATCGCTCTTCTATCATTGTGGGTAGGATAAAATGGAGAAGATAGTCTGAAATGCAGAGGTGGTATATGGTTGCCCACGTGAAGCAAAAGAAACAGTACAA
TTCATTGACAAATACTGCGAAGGATACAGAGACTTATTTTATTTCCAGAAGTGAGAAGCTTTGAATACTTGCATCTAGGATTAATTGCGAATATCAAGAG
AAAAACCTTCCCAGAAATAGCTAAGGTAGTAGGACTAGAAAATGGACAAGGATTTGACTATTTCTTCGGTAAAAGCCCTTGGTTGTTAGAGGAGGTGAGG
GAAAGAAGAATTAATAAAATTCTGAGTTTTGCGGAAGGAGAAGCAATAACAATGCTCATAGACGAAACAGGGGATAGGAAAAAAGGAAGAAAGACAGATT
ATGTTGCGCGTCAGTATATTGGCAATCTAGGAAAAATAGAAAATGGAATAGTAGAGGTGATGTGTTATGGAATTATAAAGGGAATGACAGTACCATTAAT
CAGCAAAGTATATAAATCAGAGACAAGACTAAAAGAGGGGGATAAATACAAAAGTAAACCAGAGATAGCAGGGGAAATTATCAAAGAAATAAAAGAGCTT
GGTTTCAATATAAAGGTAGTACTAGCAGATAGTGAATATGGAGAGAGCAGCGAAAACTTTGTAAGAGTATTAGAAAAAGAAAATCTAGAATATGTACTAG
CTATAAGGAGTAATCATGGAGTCTGGCTTGGGAAAGAGGAAAGAGTAAGAGCGAACAAATGGGGAAAATTTGAGAGAGAATTTGCAAGTGGAAAGTCGGA
AATAAGATACGTGAGAGAAATTATTTATGGAAAGAGAGGGGAAAAAAGATATTGGCAAGTAACGAATAACAAGGAGAAAATGCCGTCAAATTCAACGTAT
TGTATTATGACAAAAGTATCAGAAATAAAATATAAAGAAGTGGGTAACTTATATGGAGCAAGGAACTGGATAGAGTATGGATTAAAGCAAATAAAGAATG
AACTGGAGTGGGCAGATTTTAGAATGATGGACTATTCCAGAATAGAAAAATGGCGGGAAATAGTGATGAGCGTATATTTAATGGCAAGTCTTCAGATAGA
AAATTTGCCTCCGCATGATAACTCCTTAAACAAATCAAAACAGACTAGGGAGATAGCTTATCAGAATATACAAAAACATCCTTGGTGGAATCAAAAAGTG
GATGGAAAAACATACTTAACAACATGAGATTAATAATTCACCCATTATGTTACTTTAATTTATTAAAGCGGTTGATGACGGTGATTTATACACCTCAGTT
ATTGAGAAACTTCCATTGCTTATTTGACAAATTGAAGAAGGCAGTAATGGCCTTAGGAGACCTTATTATTGCTCCAATTATTTTACCTTCCCACCTACAC
TGATAGAAGAGCGATADA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1077 bp358 aa1511227+No
ORF function : Transposase
Description :

ORF sequence :

MRSFEYLHLGLIANIKRKTFPEIAKVVGLENGQGFDYFFGKSPWLLEEVRERRINKILSFAEGEAITMLIDETGDRKKGRKTDYVARQYIGNLGKIENGI
VEVMCYGIIKGMTVPLISKVYKSETRLKEGDKYKSKPEIAGEIIKEIKELGFNIKVVLADSEYGESSENFVRVLEKENLEYVLAIRSNHGVWLGKEERVR
ANKWGKFEREFASGKSEIRYVREIIYGKRGEKRYWQVTNNKEKMPSNSTYCIMTKVSEIKYKEVGNLYGARNWIEYGLKQIKNELEWADFRMMDYSRIEK
WREIVMSVYLMASLQIENLPPHDNSLNKSKQTREIAYQNIQKHPWWNQKVDGKTYLTTDA

 

Blast result :
Comments
See Synechocystis sp. Genome (cf. genome section in ISDatabase).
References
1]Kaneko,T., Sato,S., Kotani,H., Tanaka,A., Asamizu,E., Nakamura,Y., Miyajima,N., Hirosawa,M., Sugiura,M., Sasamoto,S., Kimura,T., Hosouchi,T., Matsuno,A., Muraki,A., Nakazaki,N., Naruo,K., Okumura,S., Shimpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S.(1996) DNA Res. 3 (3), 109-136