ISOan9

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_DS990628.1 ND Octadecabacter antarcticus
Octadecabacter antarcticus 238
DNA section
IS Length : 1401 bp

Ends


IR Length : 21/25

IRL : GAGTTATGCGGAAATTTGGGTGATGGCGTGATTTGAAAGGCGGCGTATTG
IRR : GAGCTATGCTTGAATTTGGGTGATGCGCTTTATCAGGCGGCGCGGTTTTC

Insertion site


Left flankDirect repeatRight flankDR Length
CCTAAGGTGCCTGCACGCAAAGTAATTAT9

DNA sequence

GAGTTATGCGGAAATTTGGGTGATGGCGTGATTTGAAAGGCGGCGTATTGTGGCAGGTGTCAAATCCAGCCAGAACCTCACGAGGAGCAATACGCCTATG
AAGAACGATACACCGAGCCTTCCGTTTCGCCAATCGGAAACGATCGTAGATCCGCTGTCAGAACTTGCACGGGAGGGTGCTCGGCGGATGCTGGCGGAAG
CGCTGAAAGCCGAAGCTGATGCATTTGTCGCCAGTTTTTTAGATGAACAGCTGGAGGATGGCCGCCAGCGGATTGTGCGGCATGGATTTGGCCCTGAACG
GCAGATCCAGACCGGTATTGGTGCTCTGGATGTTCAACGGCCCAAGGTGCGCGACCGGCTGGCGACATCTGATCCGTCTACAAAGATACGCTTTACGTCG
AACATACTGCCGAAATGGGCGCGCCGCTCGGTGAGCTTGGATGCCTTGCTGCCGGTGCTGTATCTGAAGGGCATTTCTACGGGTGATTTCCAAGAGGCGC
TCTCAGCCATTATGGGCCCTGATGCGCCCAACCTGTCGCCAAGTGTCATATCACGACTGACGGCAGGGTGGCAGACACAATATGACACCTGGATACGGCG
TGACCTGTCTGCACGTCACTACGTCTACATTTGGGCGGATGGCGTCTATCTACAGGCCCGGATGGAGGAAAATGCTGAATGTATACTGGTGATCATCGGC
GCGACACCTGAGGGCAAGAAAGAACTGATTGGCTTTCAGGTCGGCCTTCGGGAGAGCGCACAAAGCTGGCATGAGTTGCTGGCTGACATAAAGGGTCGCG
GGTTGTCTGTCGCACCGGAAATTGCGGTTGGTGATGGGGCCATGGGGTTCTGGAATGCACTGGACAGAGCGTTTCCAAGCACAAAACATCAGCGCTGTTG
GGTTCATAAGCTGAAGAACGTCCTGAACTGCTTTCCAAAGCAGATGGCCCCAGCCGTGAAATCAGACCTGGACGATATCCAGCACGCAGGGACGCGTAAA
CAAGCAGACGCGGCGCTCGCAATGTTTTCCGAGAAGTACGGAGCCAAATATCCAAAGGGCGTAACCTGCCTGATCAAGGATCAAGAAGCGATGCTCGCAT
TCTTCGATTTCCCGGCTGAACATTGGGGCCATTTACGCACGTCAAACCCCATTGAAAGCGTGTTTGCCACTGTGCGGCATCGCACGGTGCGCACCAAAGG
CGCGCTGTCACAAAAGACCGCGAAGTTGATGGTCTTTACCCTCATTCAAGCTGCATCAAAGAAATGGCTGCGTCTCAAGGGCAGAAACCAGTTGCCAAAA
GTCATCGAAGGAACCAAATTCAACGACGGTGTCGAAGCGACCGACGACGCCGAAAACCGCGCCGCCTGATAAAGCGCATCACCCAAATTCAAGCATAGCT
C
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1320 bp439 aa501369+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAGVKSSQNLTRSNTPMKNDTPSLPFRQSETIVDPLSELAREGARRMLAEALKAEADAFVASFLDEQLEDGRQRIVRHGFGPERQIQTGIGALDVQRPKV
RDRLATSDPSTKIRFTSNILPKWARRSVSLDALLPVLYLKGISTGDFQEALSAIMGPDAPNLSPSVISRLTAGWQTQYDTWIRRDLSARHYVYIWADGVY
LQARMEENAECILVIIGATPEGKKELIGFQVGLRESAQSWHELLADIKGRGLSVAPEIAVGDGAMGFWNALDRAFPSTKHQRCWVHKLKNVLNCFPKQMA
PAVKSDLDDIQHAGTRKQADAALAMFSEKYGAKYPKGVTCLIKDQEAMLAFFDFPAEHWGHLRTSNPIESVFATVRHRTVRTKGALSQKTAKLMVFTLIQ
AASKKWLRLKGRNQLPKVIEGTKFNDGVEATDDAENRAA

 

Blast result :
Comments
ISOan9 is 78% aa similar to ISMex3.
References