ISAba23

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Acinetobacter baumannii
Acinetobacter sp. ATCC 27244
Acinetobacter baumannii D78
Acinetobacter baumannii D81
Acinetobacter bereziniae LMG 1003
Acinetobacter haemolyticus TG21157
DNA section
IS Length : 1249 bp

Ends


IR Length : 15/16

IRL : GAAACCTTTGCACGAATAAACACACAAAAGTCCATTAAATTGGTATAATA
IRR : GAGACCTTTGCACGAAACAGCCCCTTTGCTCGAGGCATACCACCAAACCG

Insertion site


Left flankDirect repeatRight flankDR Length
TAATAAATTATTAATTACTAATGAG5

DNA sequence

GAAACCTTTGCACGAATAAACACACAAAAGTCCATTAAATTGGTATAATACAATAAAATCAATCACCTAGCAAAAGACACGACTATGGCATGGAAACAAA
CAGGGCAACTCTCCCTAGCAGACAGTCTCATTAACGCTCACAAAGCCATCGAAGAATTAGATGAACTACACAACCTAATTGACTGGCAAACTATCGAGCA
AACCTTACGCCACGTTCATAGCAGTGAGCGTGGGGAATCTGCCTTTCACCCTGTCATCATGTTTAAAGTATTACTCTTACAAAAACTCTATAACCTATCG
GATCCAGCCATGGAAAAACAACTGGCACGAGACTTACTATTTCGTCGCTTTGTTGGCCTATCATTAACGGATGATGTACCCGACCATAGCACCATTTGGC
GATACCACAAACACCTAGGTGAGCTTAGACTGATTGAACCATTGTTCAACCAAATCAATGAGCAACTAGCCCAACAAAACATTTTTATCAAAGCGGGCAG
TGTCAGCATCATCGATGCCAGTATCGTTGAAGCTAAAAACAAACGACCTAAGAAAGGCAAACACACCGACAATACCCAAGATAACGAAGCCGCCTATGTC
AGTAAAAAAGACAGTACAGGTAAAGTAAAAACCACCTACGGCTTTAAAATTCATCTCAACTGTGATGAAGACAGCTTTGTCAAAAAGGTTGAAACTACCC
CTGCCAATGTCCATGATTCCCAATGTTTTACCACGCTGTTAACAGATGATGAATCAGCCGTGTATGCTGACAGTGCGTATAAAAGCCAAGCCCATGATGA
CTACCTTGCCGAGCATGAACCACCGATAAAAAATCATATTCATGATAGAGCATGGCGCAATACACCCTTAACCGAACAGCAAAAACGCAATAATACCCAA
AAGAGCCAAACTAGAAACACCGTTGAGCGGGTCTTTGGACATTTTAAACTGCATTATGGGATGAGCAAAGCTCGTCATTTAGGGTTAATGCAATTTCATA
CCAGCACTTTGCTTGCAAGCATGGTGCATAATTTAAAAACTGCCCTAAGCTTGAAACGAAAATACGGACTCGCCTAGGGTTATTGTGCCTGTTGGTTAGT
AAGCTCAGCCAATAGACACAAATTTAACAACCATTTGGAGATTTTATCCATGATTTAGCCATTGTTTTGCTTATTTCATTGCCATTCTTTGTTTTTTTTC
GGTTTGGTGGTATGCCTCGAGCAAAGGGGCTGTTTCGTGCAAAGGTCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
993 bp330 aa851077+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAWKQTGQLSLADSLINAHKAIEELDELHNLIDWQTIEQTLRHVHSSERGESAFHPVIMFKVLLLQKLYNLSDPAMEKQLARDLLFRRFVGLSLTDDVPD
HSTIWRYHKHLGELRLIEPLFNQINEQLAQQNIFIKAGSVSIIDASIVEAKNKRPKKGKHTDNTQDNEAAYVSKKDSTGKVKTTYGFKIHLNCDEDSFVK
KVETTPANVHDSQCFTTLLTDDESAVYADSAYKSQAHDDYLAEHEPPIKNHIHDRAWRNTPLTEQQKRNNTQKSQTRNTVERVFGHFKLHYGMSKARHLG
LMQFHTSTLLASMVHNLKTALSLKRKYGLA

 

Blast result :
Comments
ISAba23 is 50% aa similar to ISAtu2.
References
1] Johanna Kenyon (2013) Direct submission.