ISMrh1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AGIQ01000009.1 ND Mycobacterium rhodesiae
Mycobacterium rhodesiae JS60
DNA section
IS Length : 1472 bp

Ends


IR Length : 21/27

IRL : GAGCAATGATCAGAACCTGTGGATGAGCCTCGGTGGGGCGGCGTGAAAGT
IRR : GAGATATTGTCAAGACCTGTGGATGAGGTTATTTCAGGCGACCTCCGTTT

Insertion site


Left flankDirect repeatRight flankDR Length
GTGACAACATGGTCGATACCCCAAACCACCA9
CGCACAGCGCGAATCCAATTTTCGTGACGTC8

DNA sequence

GAGCAATGATCAGAACCTGTGGATGAGCCTCGGTGGGGCGGCGTGAAAGTGGGCGCACCTTCCCGAGGATGATCTGAAAGTCCAGTAGCTCTGATCAAGA
CCGGCGTTGGCGCGCTGGTTGGGAAGGTACGCCCATGCTCACCGTAGTTCAGGATGCCCGTGAGGCCAACGGCAACGGGGCCGGACGCCGATCGTTGCTC
GATGAAATCGTTCGCGACGGCGCGCGGCAGATGTTGGCGGCGGCATTGCAGGCTGAGGTCGCCGCCTATGTCGAGCAGTTCGCCGATCAACTCGACGAGA
ACGGCCGACGGTTGGTGGTCCGCAACGGCTATCACCACGAACGTGAAGTCCTGACCGCGGCGGGTGCGGTGACGGTGACCGCGCCGCGGGTCAACGACAA
ACGTGTCGATGCCGATACTGGTGAACGGCAGCGGTTTTCCTCGGCGATCCTGCCAGCGTGGGCGCGCAAGTCCCCGCAGATGACCGAGGTGCTGCCGCTG
CTGTACCTGCATGGCCTGTCGACCAGTGACTTCGGCCCAGCTTTGGAGCAGTTCCTGGGCACGGCCGCGGGGCTCTCAGCAACGACGATCACGCGGCTCA
CCAGCCAGTGGCAGGACGAGGCGAAGGCCTTCGGTGATCGTGACCTCTCGGGCACCGATTACGTCTACCTGTGGGTCGACGGCATCCACCTCAAGGTCCG
CCTTGAGCAGGAAAAGCTGTGCCTGCTGGTGATGATCGGGGTGCGTGCCGATGGCCGCAAAGAGCTCGTCGCCCTGGCCGACGGGTATCGAGAGTCGACC
GAGTCGTGGGCGGATCTGCTGCGGTCGTGCCGCCGCCGCGGGATGGCCGCGCCGGTGCTGGCCGTCGGTGATGGCGCGTTGGGGTTCTGGAAGGCGGTCC
GGGAAGTGTTCCCGGCCACCCGGGAGCAGCGGTGCTGGTTCCACAAGCAGGCCAATGTGCTTGCCGCGCTGCCGAAGTCAGCGCACCCTGGGGCATTGGC
GGCGATCAAGGAGATCTACAACGCCGAGGACATCGACAAGGCCCAGGTCGCGATCAAGGCCTTCGCGCTCGACTACGGCGCCAAGTATCCCAAGGCGGTC
GCGAAGATCGTCGACGACGCCGATGTCCTGCTGGAGTTCTACAAATATCCGGCCGAGCATTGGATCCATTTGAGGACGACGAATCCGATCGAGTCGACGT
TCGCCACCGTGCGGTTGCGGACAAAGGTCACCAAGGGCCCAGGATCACGCGCTGCGGGAATTGCCATGGCCTACAAGCTGATCGACGCCGCGCAGGCCCG
CTGGCGGGCCGTGAACGCTCCACACTTGGTCGCCCTCGTCCGTGCCGGCGCGGTGTTCCACAAGGGCAAGCTACTCGAACGGCCCGTCGACATCACACCC
GCCGAGAATGGCGAATCAACCGAAACGGAGGTCGCCTGAAATAACCTCATCCACAGGTCTTGACAATATCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1305 bp434 aa1351439+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLTVVQDAREANGNGAGRRSLLDEIVRDGARQMLAAALQAEVAAYVEQFADQLDENGRRLVVRNGYHHEREVLTAAGAVTVTAPRVNDKRVDADTGERQR
FSSAILPAWARKSPQMTEVLPLLYLHGLSTSDFGPALEQFLGTAAGLSATTITRLTSQWQDEAKAFGDRDLSGTDYVYLWVDGIHLKVRLEQEKLCLLVM
IGVRADGRKELVALADGYRESTESWADLLRSCRRRGMAAPVLAVGDGALGFWKAVREVFPATREQRCWFHKQANVLAALPKSAHPGALAAIKEIYNAEDI
DKAQVAIKAFALDYGAKYPKAVAKIVDDADVLLEFYKYPAEHWIHLRTTNPIESTFATVRLRTKVTKGPGSRAAGIAMAYKLIDAAQARWRAVNAPHLVA
LVRAGAVFHKGKLLERPVDITPAENGESTETEVA

 

Blast result :
Comments
ISMrh1 is 94% aa similar to IS666.
References