ISRer3
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012490 | ND | Rhodococcus erythropolis | Rhodococcus sp. IGTS8 Rhodococcus erythropolis PR4 Microbacterium sp. AJ115 |
DNA section
IS Length : 1471 bp
Ends
IR Length : 19/25
IRL : GAGCAATGATCAGAACCTGTGGATGGTTCTCGGCGAGGCGGCGTGAGTGG
IRR : GAGATATTGTCAAGACCTGTGGATGAGGGTGTTTCAGGCGACCTCCGTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTCGATGGC | CCCGCATTC | AACATTAACG | 9 |
ACGGTCGGTC | GCACCACGGT | ATCCACACAT | 10 |
GGCCAAGTTGTGTGCAACAA | CTTGTGTGCACCCGTACGTA | 0 |
DNA sequence
GAGCAATGATCAGAACCTGTGGATGGTTCTCGGCGAGGCGGCGTGAGTGGGCGCACCTTCCCGGGAATGATCTGAAATTCCATCAGCTCTGATCAGGACC
GGCGTTGGCGCGCTGGTTCGGGAAGGTACGCCCATGCTCACGGTAGTTCAGGATCAGCAATCCTCCAACGACGACAGCGGTGTTGGTCGGTCGTTGCTTG
ACGAGATCGTTCGCGACGGTGCCCGGCAGATGCTCGCGGCGGCGTTGGCCGCCGAAGTCGCCGCATACATCGAGCAGTTCGCCGAGCATCTCGATGAGCA
CGGCCGGCGGCTGGTGGTCCGCAACGGCTATCACCACGAGCGTGACGTGCTCACCGCGGCGGGGGCGGTGACGGTGACCGCACCGCGGGTCAACGACCGC
CGTGTCGACGCCGAGACCGGTGAACGGCAACGGTTTTCCTCGGCGATCCTGCCGGCGTGGTCACGCAAGTCCCCGCAGATGACCGAGGTGTTGCCGCTGC
TGTACCTGCACGGGCTGTCCAGCGGCGACTTCGGTGCGGCGTTGGAGCAGTTCCTCGGCACTGGTGCCGGGCTGTCGGCCTCGACGATCACCCGGCTGAC
CGCGCAATGGCAGGACGAGGCGAAGGCCTTCGCCGACCGGGATCTCTCGGGCACCGATTTCGTGTACCTATGGGTCGACGGCATCCATCTCAATGTCCGC
CTGGAGCAGGAGAAGCTGTGCTTGCTCGTGATGATCGGCGTCCGCGCCGACGGCCGCAAGGAGCTCGTCGCGCTCACCGATGGGTTCCGGGAGTCCACAG
AGTCGTGGGCTGATCTGCTGCGCTCATGCCGACGCCGCGGGATGACCGCCCCGGTGCTGGCCGTCGGTGATGGGGCGCTGGGGTTCTGGAAGGCACTGCG
GGAGGTGTTTCCGGATACCCGTGAACAGCGCTGCTGGTTTCACAAGCAGGCCAATGTGCTTGCTGCGCTGCCCAAGTCGGCTCATCCAGGTGCGACCGCG
GCGATGCGGGAAATCTACAACGCCGAGGACATCGACAAGGCCCAGGTCGCGATCAAGGCCTTCGAGGTAGATTACGGCGCGAAGTACCCCAAGGCGGTCG
CCAAGATCGTCGACGACGCCGACGTGCTCCTGGAGTTCTACCGGTACCCGGCCGAGCACTGGATCCACTTGCGCACTACGAATCCGATCGAATCGACGTT
TGCGACCGTGCGGTTGCGAACCAAGGTCACCAAGGGCCCTGGGTCACGCGCAGCGGGGATTGCCATGGCCTACAAGCTGATCGACGCCGCACAAGCCCGC
TGGCGGGCGGTCAACGCCCCCCATCTGGTCGCGCTGGTCCGTGCCGGCGCGGTGTTCCACAAAGGCAAGCTGCTCGAACGACCCATCGACATCTCACCCG
CTGAGCCCGACGAATCAAGCGAAACGGAGGTCGCCTGAAACACCCTCATCCACAGGTCTTGACAATATCTC
GGCGTTGGCGCGCTGGTTCGGGAAGGTACGCCCATGCTCACGGTAGTTCAGGATCAGCAATCCTCCAACGACGACAGCGGTGTTGGTCGGTCGTTGCTTG
ACGAGATCGTTCGCGACGGTGCCCGGCAGATGCTCGCGGCGGCGTTGGCCGCCGAAGTCGCCGCATACATCGAGCAGTTCGCCGAGCATCTCGATGAGCA
CGGCCGGCGGCTGGTGGTCCGCAACGGCTATCACCACGAGCGTGACGTGCTCACCGCGGCGGGGGCGGTGACGGTGACCGCACCGCGGGTCAACGACCGC
CGTGTCGACGCCGAGACCGGTGAACGGCAACGGTTTTCCTCGGCGATCCTGCCGGCGTGGTCACGCAAGTCCCCGCAGATGACCGAGGTGTTGCCGCTGC
TGTACCTGCACGGGCTGTCCAGCGGCGACTTCGGTGCGGCGTTGGAGCAGTTCCTCGGCACTGGTGCCGGGCTGTCGGCCTCGACGATCACCCGGCTGAC
CGCGCAATGGCAGGACGAGGCGAAGGCCTTCGCCGACCGGGATCTCTCGGGCACCGATTTCGTGTACCTATGGGTCGACGGCATCCATCTCAATGTCCGC
CTGGAGCAGGAGAAGCTGTGCTTGCTCGTGATGATCGGCGTCCGCGCCGACGGCCGCAAGGAGCTCGTCGCGCTCACCGATGGGTTCCGGGAGTCCACAG
AGTCGTGGGCTGATCTGCTGCGCTCATGCCGACGCCGCGGGATGACCGCCCCGGTGCTGGCCGTCGGTGATGGGGCGCTGGGGTTCTGGAAGGCACTGCG
GGAGGTGTTTCCGGATACCCGTGAACAGCGCTGCTGGTTTCACAAGCAGGCCAATGTGCTTGCTGCGCTGCCCAAGTCGGCTCATCCAGGTGCGACCGCG
GCGATGCGGGAAATCTACAACGCCGAGGACATCGACAAGGCCCAGGTCGCGATCAAGGCCTTCGAGGTAGATTACGGCGCGAAGTACCCCAAGGCGGTCG
CCAAGATCGTCGACGACGCCGACGTGCTCCTGGAGTTCTACCGGTACCCGGCCGAGCACTGGATCCACTTGCGCACTACGAATCCGATCGAATCGACGTT
TGCGACCGTGCGGTTGCGAACCAAGGTCACCAAGGGCCCTGGGTCACGCGCAGCGGGGATTGCCATGGCCTACAAGCTGATCGACGCCGCACAAGCCCGC
TGGCGGGCGGTCAACGCCCCCCATCTGGTCGCGCTGGTCCGTGCCGGCGCGGTGTTCCACAAAGGCAAGCTGCTCGAACGACCCATCGACATCTCACCCG
CTGAGCCCGACGAATCAAGCGAAACGGAGGTCGCCTGAAACACCCTCATCCACAGGTCTTGACAATATCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1305 bp | 434 aa | 134 | 1438 | + | No |
Chemistry : DDE
ORF sequence :
MLTVVQDQQSSNDDSGVGRSLLDEIVRDGARQMLAAALAAEVAAYIEQFAEHLDEHGRRLVVRNGYHHERDVLTAAGAVTVTAPRVNDRRVDAETGERQR
FSSAILPAWSRKSPQMTEVLPLLYLHGLSSGDFGAALEQFLGTGAGLSASTITRLTAQWQDEAKAFADRDLSGTDFVYLWVDGIHLNVRLEQEKLCLLVM
IGVRADGRKELVALTDGFRESTESWADLLRSCRRRGMTAPVLAVGDGALGFWKALREVFPDTREQRCWFHKQANVLAALPKSAHPGATAAMREIYNAEDI
DKAQVAIKAFEVDYGAKYPKAVAKIVDDADVLLEFYRYPAEHWIHLRTTNPIESTFATVRLRTKVTKGPGSRAAGIAMAYKLIDAAQARWRAVNAPHLVA
LVRAGAVFHKGKLLERPIDISPAEPDESSETEVA
FSSAILPAWSRKSPQMTEVLPLLYLHGLSSGDFGAALEQFLGTGAGLSASTITRLTAQWQDEAKAFADRDLSGTDFVYLWVDGIHLNVRLEQEKLCLLVM
IGVRADGRKELVALTDGFRESTESWADLLRSCRRRGMTAPVLAVGDGALGFWKALREVFPDTREQRCWFHKQANVLAALPKSAHPGATAAMREIYNAEDI
DKAQVAIKAFEVDYGAKYPKAVAKIVDDADVLLEFYRYPAEHWIHLRTTNPIESTFATVRLRTKVTKGPGSRAAGIAMAYKLIDAAQARWRAVNAPHLVA
LVRAGAVFHKGKLLERPIDISPAEPDESSETEVA
Blast result :
Comments
ISRer3 is 98% aa similar to IS1166.
References