ISTwi1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_015958 | ND | Thermoanaerobacter wiegelii | Thermoanaerobacter pseudethanolicus ATCC 33223 Thermoanaerobacter brockii subsp. finnii Ako-1 Thermoanaerobacter wiegelii Rt8.B1 |
DNA section
IS Length : 1545 bp
Ends
IR Length : 19/23
IRL : GAGACTGTAAAAAATTTTGTGTAAACTGATTAAAAACCTCTTTCTTGGTA
IRR : GGGAGTGAAAAATATTTTGTGTATTTAGATTAATTATATCCTCTTTCTCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAAATCCTCCTTGTATGA | TTTTAAGAGCAATAAA | 0 | |
AGCATAGTACTATTATTACA | AATAAAAATCTAAAATTGCA | 0 | |
TAAATGTGAAAAAATAAAAA | ATATTTTAATTCAACGCTTT | 0 | |
CTAAAGAACG | TCTATTAC | AAAACATATG | 8 |
GCATTATTAT | CGAGTAGG | AGCTGAATAA | 8 |
AACTAAAGAACG | TCTATTAC | AAAACATATGTA | 8 |
AAGCATTATTAT | CGAGTAGG | AGCTGAATAATT | 8 |
DNA sequence
GAGACTGTAAAAAATTTTGTGTAAACTGATTAAAAACCTCTTTCTTGGTAAGAATTAGAATATATACAAAACCAAGAAGGAGGTTTTAAAAATGTCACTA
TTGACAAAAGAGCAATTAAGAAATTTCATTAGTGAAAACAATATTCAATCTGTTCCAGACCTTTATACATCATTAAAAAATCTCTTTAAAAATACTATTC
AAGAAATGCTTGAAGCAGAACTTTCAGCAGAACTTGGCTATGAAAGATATGACAAGAAAGACAAAGATACTCAAAATTCAAGAAATGGCTATACTCAAAA
GACAGTAAAAACGCAATTTGGTGAGATGGGAATTGATATTCCAAGAGACAGACAAGGAGAATTTGAACCCAAAATAGTTCCAAAATACAAAAGAGACATA
TCAGGAATTGAAGAAAAAGTAATAGCTCTATATGCAAGAGGAATGTCAACAAGAGATATTCATGACCAGATAAAAGACCTGTATGGAATAGAACTATTTG
CAGAAATGGTAAGTAAAATAACCGAAAGAATAGTACCAGAAATAAAAGAATGGCAATCAAGACCATTAGAAAAGATATACACTTTCATATTTATGGATGC
CATCCATTACAAAGTAAGAACAGATGGCCATATTATCAATAGAGCAGCTTATGTAGTATTAGGGGTAACGATAGAGGGCATAAAAGATATATTAGGGATT
TGGATTGGAGAAAATGAGAGTTCAAGATTCTGGCTTGGAGTATTAAATGAGCTAAAGAACAGAGGAGTAGAAGATGTTTTAGTATTTTCTGTAGATGGAT
TAACAGGGATAAAAGAAGCAATACAAGCAGCATTTCCAAAATCAGAGATACAAAGATGTATAATACATCAATTAAGGAACTGTTTCAAATATGTGTCATA
TAAACACCTTAAAGAATTCAGTAAAGACTTTAAAGCAGTATATCAAGCAGCTAATGAAGAAATAGCAAGAGATGAATTTGAGAAATTAAAAAACAAATGG
CAGAATCTATATCCTTATGCCATAAAGAGTTGGGAGAATAACTGGGATGTATTAAGTCCATTTTACAAATTCCCTGAAGAAGTAAGGAAAATAATGTATA
CAACAAACATAATTGAAGGATTCCATAGGCAGTTAAGAAAAGTTACAAAATCAAAAATAATATTTCCATCTGATGAAGCATTAGAAAAAATGCTATACTT
AGTAACAATGAATGTATTAAAGAAATGGACAGTGAGGTATAAAAACTGGGATATAGTATTAAACCAATTAATCATAATGTATCCTGGAAGACTTGAAAAA
TACTTATAGGGGGCGAAGCCCGAAAAAATTTTTTCTCTAGAACCTTTGAATCCCTAGGTCTTCAAAGGTTCTAGAGAAAAGCTTACAGTATCCCTAATTA
AATATTTTAACCAAAATTATTCACTTTCATGCATAAGATGTAGAAAAAAGGTCATACTAAAGATAGAACAGATAAAAATGTTAACTGATTCTTACTGAGA
AAGAGGATATAATTAATCTAAATACACAAAATATTTTTCACTCCC
TTGACAAAAGAGCAATTAAGAAATTTCATTAGTGAAAACAATATTCAATCTGTTCCAGACCTTTATACATCATTAAAAAATCTCTTTAAAAATACTATTC
AAGAAATGCTTGAAGCAGAACTTTCAGCAGAACTTGGCTATGAAAGATATGACAAGAAAGACAAAGATACTCAAAATTCAAGAAATGGCTATACTCAAAA
GACAGTAAAAACGCAATTTGGTGAGATGGGAATTGATATTCCAAGAGACAGACAAGGAGAATTTGAACCCAAAATAGTTCCAAAATACAAAAGAGACATA
TCAGGAATTGAAGAAAAAGTAATAGCTCTATATGCAAGAGGAATGTCAACAAGAGATATTCATGACCAGATAAAAGACCTGTATGGAATAGAACTATTTG
CAGAAATGGTAAGTAAAATAACCGAAAGAATAGTACCAGAAATAAAAGAATGGCAATCAAGACCATTAGAAAAGATATACACTTTCATATTTATGGATGC
CATCCATTACAAAGTAAGAACAGATGGCCATATTATCAATAGAGCAGCTTATGTAGTATTAGGGGTAACGATAGAGGGCATAAAAGATATATTAGGGATT
TGGATTGGAGAAAATGAGAGTTCAAGATTCTGGCTTGGAGTATTAAATGAGCTAAAGAACAGAGGAGTAGAAGATGTTTTAGTATTTTCTGTAGATGGAT
TAACAGGGATAAAAGAAGCAATACAAGCAGCATTTCCAAAATCAGAGATACAAAGATGTATAATACATCAATTAAGGAACTGTTTCAAATATGTGTCATA
TAAACACCTTAAAGAATTCAGTAAAGACTTTAAAGCAGTATATCAAGCAGCTAATGAAGAAATAGCAAGAGATGAATTTGAGAAATTAAAAAACAAATGG
CAGAATCTATATCCTTATGCCATAAAGAGTTGGGAGAATAACTGGGATGTATTAAGTCCATTTTACAAATTCCCTGAAGAAGTAAGGAAAATAATGTATA
CAACAAACATAATTGAAGGATTCCATAGGCAGTTAAGAAAAGTTACAAAATCAAAAATAATATTTCCATCTGATGAAGCATTAGAAAAAATGCTATACTT
AGTAACAATGAATGTATTAAAGAAATGGACAGTGAGGTATAAAAACTGGGATATAGTATTAAACCAATTAATCATAATGTATCCTGGAAGACTTGAAAAA
TACTTATAGGGGGCGAAGCCCGAAAAAATTTTTTCTCTAGAACCTTTGAATCCCTAGGTCTTCAAAGGTTCTAGAGAAAAGCTTACAGTATCCCTAATTA
AATATTTTAACCAAAATTATTCACTTTCATGCATAAGATGTAGAAAAAAGGTCATACTAAAGATAGAACAGATAAAAATGTTAACTGATTCTTACTGAGA
AAGAGGATATAATTAATCTAAATACACAAAATATTTTTCACTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1218 bp | 405 aa | 92 | 1309 | + | No |
Chemistry : DDE
ORF sequence :
MSLLTKEQLRNFISENNIQSVPDLYTSLKNLFKNTIQEMLEAELSAELGYERYDKKDKDTQNSRNGYTQKTVKTQFGEMGIDIPRDRQGEFEPKIVPKYK
RDISGIEEKVIALYARGMSTRDIHDQIKDLYGIELFAEMVSKITERIVPEIKEWQSRPLEKIYTFIFMDAIHYKVRTDGHIINRAAYVVLGVTIEGIKDI
LGIWIGENESSRFWLGVLNELKNRGVEDVLVFSVDGLTGIKEAIQAAFPKSEIQRCIIHQLRNCFKYVSYKHLKEFSKDFKAVYQAANEEIARDEFEKLK
NKWQNLYPYAIKSWENNWDVLSPFYKFPEEVRKIMYTTNIIEGFHRQLRKVTKSKIIFPSDEALEKMLYLVTMNVLKKWTVRYKNWDIVLNQLIIMYPGR
LEKYL
RDISGIEEKVIALYARGMSTRDIHDQIKDLYGIELFAEMVSKITERIVPEIKEWQSRPLEKIYTFIFMDAIHYKVRTDGHIINRAAYVVLGVTIEGIKDI
LGIWIGENESSRFWLGVLNELKNRGVEDVLVFSVDGLTGIKEAIQAAFPKSEIQRCIIHQLRNCFKYVSYKHLKEFSKDFKAVYQAANEEIARDEFEKLK
NKWQNLYPYAIKSWENNWDVLSPFYKFPEEVRKIMYTTNIIEGFHRQLRKVTKSKIIFPSDEALEKMLYLVTMNVLKKWTVRYKNWDIVLNQLIIMYPGR
LEKYL
Blast result :
Comments
ISTwi1 is 77% aa similar to ISCth4.
References