ISTwi1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_015958 ND Thermoanaerobacter wiegelii
Thermoanaerobacter pseudethanolicus ATCC 33223
Thermoanaerobacter brockii subsp. finnii Ako-1
Thermoanaerobacter wiegelii Rt8.B1
DNA section
IS Length : 1545 bp

Ends


IR Length : 19/23

IRL : GAGACTGTAAAAAATTTTGTGTAAACTGATTAAAAACCTCTTTCTTGGTA
IRR : GGGAGTGAAAAATATTTTGTGTATTTAGATTAATTATATCCTCTTTCTCA

Insertion site


Left flankDirect repeatRight flankDR Length
GAAAATCCTCCTTGTATGATTTTAAGAGCAATAAA0
AGCATAGTACTATTATTACAAATAAAAATCTAAAATTGCA0
TAAATGTGAAAAAATAAAAAATATTTTAATTCAACGCTTT0
CTAAAGAACGTCTATTACAAAACATATG8
GCATTATTATCGAGTAGGAGCTGAATAA8
AACTAAAGAACGTCTATTACAAAACATATGTA8
AAGCATTATTATCGAGTAGGAGCTGAATAATT8

DNA sequence

GAGACTGTAAAAAATTTTGTGTAAACTGATTAAAAACCTCTTTCTTGGTAAGAATTAGAATATATACAAAACCAAGAAGGAGGTTTTAAAAATGTCACTA
TTGACAAAAGAGCAATTAAGAAATTTCATTAGTGAAAACAATATTCAATCTGTTCCAGACCTTTATACATCATTAAAAAATCTCTTTAAAAATACTATTC
AAGAAATGCTTGAAGCAGAACTTTCAGCAGAACTTGGCTATGAAAGATATGACAAGAAAGACAAAGATACTCAAAATTCAAGAAATGGCTATACTCAAAA
GACAGTAAAAACGCAATTTGGTGAGATGGGAATTGATATTCCAAGAGACAGACAAGGAGAATTTGAACCCAAAATAGTTCCAAAATACAAAAGAGACATA
TCAGGAATTGAAGAAAAAGTAATAGCTCTATATGCAAGAGGAATGTCAACAAGAGATATTCATGACCAGATAAAAGACCTGTATGGAATAGAACTATTTG
CAGAAATGGTAAGTAAAATAACCGAAAGAATAGTACCAGAAATAAAAGAATGGCAATCAAGACCATTAGAAAAGATATACACTTTCATATTTATGGATGC
CATCCATTACAAAGTAAGAACAGATGGCCATATTATCAATAGAGCAGCTTATGTAGTATTAGGGGTAACGATAGAGGGCATAAAAGATATATTAGGGATT
TGGATTGGAGAAAATGAGAGTTCAAGATTCTGGCTTGGAGTATTAAATGAGCTAAAGAACAGAGGAGTAGAAGATGTTTTAGTATTTTCTGTAGATGGAT
TAACAGGGATAAAAGAAGCAATACAAGCAGCATTTCCAAAATCAGAGATACAAAGATGTATAATACATCAATTAAGGAACTGTTTCAAATATGTGTCATA
TAAACACCTTAAAGAATTCAGTAAAGACTTTAAAGCAGTATATCAAGCAGCTAATGAAGAAATAGCAAGAGATGAATTTGAGAAATTAAAAAACAAATGG
CAGAATCTATATCCTTATGCCATAAAGAGTTGGGAGAATAACTGGGATGTATTAAGTCCATTTTACAAATTCCCTGAAGAAGTAAGGAAAATAATGTATA
CAACAAACATAATTGAAGGATTCCATAGGCAGTTAAGAAAAGTTACAAAATCAAAAATAATATTTCCATCTGATGAAGCATTAGAAAAAATGCTATACTT
AGTAACAATGAATGTATTAAAGAAATGGACAGTGAGGTATAAAAACTGGGATATAGTATTAAACCAATTAATCATAATGTATCCTGGAAGACTTGAAAAA
TACTTATAGGGGGCGAAGCCCGAAAAAATTTTTTCTCTAGAACCTTTGAATCCCTAGGTCTTCAAAGGTTCTAGAGAAAAGCTTACAGTATCCCTAATTA
AATATTTTAACCAAAATTATTCACTTTCATGCATAAGATGTAGAAAAAAGGTCATACTAAAGATAGAACAGATAAAAATGTTAACTGATTCTTACTGAGA
AAGAGGATATAATTAATCTAAATACACAAAATATTTTTCACTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1218 bp405 aa921309+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSLLTKEQLRNFISENNIQSVPDLYTSLKNLFKNTIQEMLEAELSAELGYERYDKKDKDTQNSRNGYTQKTVKTQFGEMGIDIPRDRQGEFEPKIVPKYK
RDISGIEEKVIALYARGMSTRDIHDQIKDLYGIELFAEMVSKITERIVPEIKEWQSRPLEKIYTFIFMDAIHYKVRTDGHIINRAAYVVLGVTIEGIKDI
LGIWIGENESSRFWLGVLNELKNRGVEDVLVFSVDGLTGIKEAIQAAFPKSEIQRCIIHQLRNCFKYVSYKHLKEFSKDFKAVYQAANEEIARDEFEKLK
NKWQNLYPYAIKSWENNWDVLSPFYKFPEEVRKIMYTTNIIEGFHRQLRKVTKSKIIFPSDEALEKMLYLVTMNVLKKWTVRYKNWDIVLNQLIIMYPGR
LEKYL

 

Blast result :
Comments
ISTwi1 is 77% aa similar to ISCth4.
References