ISOan6

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_DS990628.1 ND Octadecabacter antarcticus
Octadecabacter antarcticus 238
DNA section
IS Length : 1387 bp

Ends


IR Length : 22/28

IRL : GAGCTATGACTGAATCTGGTGTTTGAGTGGTTTGAAGGTTGGCGGCGTAT
IRR : GAGTTATTGTCAAATCTGGTGTTTGAGTATTGTTGGTCATGCGGTGATCT

Insertion site


Left flankDirect repeatRight flankDR Length
GATCACATGGCGCGGTTGGTACGATTTCG9
GGATCACATGGCGCGGTTGGTACGATTTCGG9
TCACCCAATCCATTTCCACACCTCAGTCAGC9
ACAATTGCTGCCTGCACAGGCCGATGAAGCC9
AAGTGGTGAGGGCCCGATGGGCGGGCCGGTT9
ATGAAACACTGCCTGACGATCAAGGATTGCC9
GCTGGCTTTGCAGAATCTTGAGAATCATCTTGTTCTAGGC0
GACGATTTCGCTTTCAAATGTGGCACTCACA9
GTTTGAGTGGTTTGAAGGTTGCGGCGAGATGGCTCCCGCC0
TCAACACGGGATCAATCCGTAGACGCTCTCTGTGGTTCTC0
TGTCAGCATTTCATCATTCGGACGAGATGCC9
TTTCTACATTGGGGTTTGCGGGGTTTTTTGCGTAAATATC0
AGTAAAAATGCGCTGGGCTTGCAAGTCTTTCAA GGTGCCG0
AGGAACGACGCGTCGCAACACGCTATGACAG9
ACCACTTTGATCGGCCTTCCTGAACTCAAGG9
AGGTCATGCGGTTAGTGTGCAGAGCCCACAG9

DNA sequence

GAGCTATGACTGAATCTGGTGTTTGAGTGGTTTGAAGGTTGGCGGCGTATCTGGTTGAATTGTTGTTGGAAGACAGCAGCCCAACCAAAGGAGATACACC
ACCATGGGAACTACTAACATTGTTGATTATGCGCGTCGAGACGAGATGACGGACGCGTTGACGGAGTTGCTGAAAACGGGAGCACAACAATTGATCGCGA
CAGCAGTTGAGGCTGAGCTTGTCAGTTATTTGGCGCAATTTACCGGCTTACGCACCGATGCCGGTCACGCGGCAGTCGTGCGTAATGGACATCATCCGGC
CCGCCCGTTTCAAACGGGCATTGGCCCTGTGAGCGTGCGCATTCCAAAGGTTCGGTCCAAGGACGGCACACCGGTGACATTCCGGTCTGCCCTGGTGCCG
CCCTATGTGCGCCGCACGAAGACGCTGGAAGCGGCCTTGCCATGGCTTTACCTCAAAGGGATCTCCAGCGGCGAGATGGCTCCCGCCCTCAAGGTTCTTC
TGGGCCCAGATGCCGTTGGCTTGTCGGCTAATACGGTTTCGCGTTTAAAACGCGATTGGGCCAATGAATACGAGGCTTGGAAAGGCGCTGAGTTAGATGA
CGAGCCCATCGTCTATATCTGGGCCGACGGCGTTCACAGCGGCCTTCGGGGCGAGGATGACAAGCTCTGTGCCCTTGTTATTATTGGGGTAACTGCCCGT
GGCAAGAAGCGATTTCTGGCAATTGAGGATGGGGTGCGCGAGTCCACGCAGAGCTGGCGCGAGGTTCTGCTTAACCTCAAAAGCCGAGGCATGAATGCGC
CCAAACTGGCCATCGGGGACGGTGCCATGGGGTTTTGGGCGGCCATGGACGAAGTCTATCCTGAGACCCGCCATCAACGCTGTTGGCAACACAAAACGAT
GAACGTGCTCAATTGTTTACCCAAGCTGTCTCAGCCAAAAGCCAAGGCCGCGCTGCACGACATCTGGCAGGCCGAGACCAAAGTCGATGCAGAAAAGGCG
TTCGATCTGTTCATCAAAACCTACGAACCCAAATATCCCAAGGCCACACTATGCCTGCAAAAAGATCGTGAGGAACTCATGGCATTCTTCGACTTCCCGG
CGCAGCATTGGCAAAGCATCCGCACTAGCAATCCAATTGAATCGGCCTTCGCGACGATCCGGCATCGTACCAAGCGTTCAAAGGGCTGCCTGTCACGCGA
TGGCATGCTGCACATGATGTTCAAACTGGGGCAATGTGCTGAGCAAAATTGGAGGAAGCTACGCGGCTTTGACTACCTCGCAAAAGTCATCACAGGCGTC
ACGTTCAAAGACGGAATCGAAACCACAAACCCCGACCAGATCACCGCATGACCAACAATACTCAAACACCAGATTTGACAATAACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1248 bp415 aa1041351+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGTTNIVDYARRDEMTDALTELLKTGAQQLIATAVEAELVSYLAQFTGLRTDAGHAAVVRNGHHPARPFQTGIGPVSVRIPKVRSKDGTPVTFRSALVPP
YVRRTKTLEAALPWLYLKGISSGEMAPALKVLLGPDAVGLSANTVSRLKRDWANEYEAWKGAELDDEPIVYIWADGVHSGLRGEDDKLCALVIIGVTARG
KKRFLAIEDGVRESTQSWREVLLNLKSRGMNAPKLAIGDGAMGFWAAMDEVYPETRHQRCWQHKTMNVLNCLPKLSQPKAKAALHDIWQAETKVDAEKAF
DLFIKTYEPKYPKATLCLQKDREELMAFFDFPAQHWQSIRTSNPIESAFATIRHRTKRSKGCLSRDGMLHMMFKLGQCAEQNWRKLRGFDYLAKVITGVT
FKDGIETTNPDQITA

 

Blast result :
Comments
ISOan6 is 96% aa similar to ISOan5.
References