ISPebe1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AATQ01000004.1 | ND | Pelagibaca bermudensis | Pelagibaca bermudensis HTCC2601 |
DNA section
IS Length : 1363 bp
Ends
IR Length : 15/29
IRL : GGTGAGGTCCCAGGTCGTGGTGTAGCTTTCGGTGGCCATCGGGTTTCTCG
IRR : GATGATGTCCCGGGAAGTGGTGTAGCTCCTCATGGGCCTCGCGCTTTCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCCGCTTTC | GTTCAGGG | CGTCCATGAT | 8 |
AGATGCCGTT | GGTTGGGGG | CATCCACCGC | 9 |
GCCAAACTCA | GAGCGCAT/G | TTTGCGGAAA | 10 |
GCAGGACTGA | TCGAAGGA | GGATCGGGCA | 8 |
DNA sequence
GGTGAGGTCCCAGGTCGTGGTGTAGCTTTCGGTGGCCATCGGGTTTCTCGGTAGGGTCGGGTTGCTGACACCAACCTGAACCGAGGGATGCCCCCGATGA
CCAAACCCATGATGGACCTGCGTGCGCTGGTAGAGAAGAGCGCCGATGCCGACCTGCTTCGCGAGATGATCGGCTTTGCTGCCGAACGGCTGATGGAGTT
GGAGGTCGGCGCCAAGACCGGTGCTGACTATGGTGAGAAGACCAGCGAGCGCCTGGCGCAGCGCAACGGGTATCGCGATCGGGACTGGCAGACCCGGGCC
GGCAGCGTCGAACTGCGCATCCCGCGCCTGCGCACCGGCTCCTATTTCCCCTCGTTCCTCGAGCCGCGGCGCTCTGTTGAGAAGGCCCTGACGGCCGTGA
TCCAGGAGGCCTATGTCCACGGCGTCTCAACGCGATCGATGGACGACCTGGTGCAGGCCATGGGTGGCACCGGGGTGTCGAAGAGCCAGGTCAGCCGACT
GTGCGAGGAGATCGACGAGCGCGTGGATGCCTTTCTGACACGGCCGATCGAGGGCGAATGGCCCTACCTCTGGATCGATGCCACCTATCTCAAGGTGCGC
CAGGGCGGCCGGATCGTATCGGTTGCGGTCACGCTCGCGGTGGGCGTCAACACCGACGGCAGGCGCGAAGTGCTGGGCATGGCGATCGGGGCCTCCGAGG
CCGAACCCTTTTGGACCGAGTTCCTGCGTGATCTCGTCCGCCGTGGCCTCAGCGGCGTGAAGCTTGTGATCAGCGATGCGCATGAGGGCATCAAGGCCGC
CACCGCCCGGGTCCTGTCCACGACCTGGCAGCGCTGCCGCGTCCACTTCCAGCGCAATGCGCTCGCCCATGCCGGCAAGAACAGCCGCCGGGTGGTCTCG
GCATTCATCGCCACGGCCTTTGCCCAGCCCGACCACGCGGCGGCGAAGGCCCAGTGGCGTCTCGTGGCGGACCAGATGCGCGGCAAGCTCCCCAAGCTGG
CCACGCTCATGGACACGGCCGAGGAGGACGTCCTGGCCTATATGACCTTCCCGGCCCAGCATCGCACCAAGCTGCACAGCACCAATCCGATCGAGCGGCT
GAACGGCGAGATCAAGCGACGCACGGACGTCGTCGGCATCTTTCCGAACGAGGCTTCGATCCGGCGCCTCGTCGGCGCGATCCTCATGGAGCAGACCGAG
GAATGGACAGTCCAGCGCGCCAGATACATGACGCTGGAAACGCTCGCGCCCGTCTGCGATGATCTCGGTGTCAGTCTGCCTGCAGCGCAGAGCGACTGAC
CAGCTCGGCCCGCTCGAAAGCGCGAGGCCCATGAGGAGCTACACCACTTCCCGGGACATCATC
CCAAACCCATGATGGACCTGCGTGCGCTGGTAGAGAAGAGCGCCGATGCCGACCTGCTTCGCGAGATGATCGGCTTTGCTGCCGAACGGCTGATGGAGTT
GGAGGTCGGCGCCAAGACCGGTGCTGACTATGGTGAGAAGACCAGCGAGCGCCTGGCGCAGCGCAACGGGTATCGCGATCGGGACTGGCAGACCCGGGCC
GGCAGCGTCGAACTGCGCATCCCGCGCCTGCGCACCGGCTCCTATTTCCCCTCGTTCCTCGAGCCGCGGCGCTCTGTTGAGAAGGCCCTGACGGCCGTGA
TCCAGGAGGCCTATGTCCACGGCGTCTCAACGCGATCGATGGACGACCTGGTGCAGGCCATGGGTGGCACCGGGGTGTCGAAGAGCCAGGTCAGCCGACT
GTGCGAGGAGATCGACGAGCGCGTGGATGCCTTTCTGACACGGCCGATCGAGGGCGAATGGCCCTACCTCTGGATCGATGCCACCTATCTCAAGGTGCGC
CAGGGCGGCCGGATCGTATCGGTTGCGGTCACGCTCGCGGTGGGCGTCAACACCGACGGCAGGCGCGAAGTGCTGGGCATGGCGATCGGGGCCTCCGAGG
CCGAACCCTTTTGGACCGAGTTCCTGCGTGATCTCGTCCGCCGTGGCCTCAGCGGCGTGAAGCTTGTGATCAGCGATGCGCATGAGGGCATCAAGGCCGC
CACCGCCCGGGTCCTGTCCACGACCTGGCAGCGCTGCCGCGTCCACTTCCAGCGCAATGCGCTCGCCCATGCCGGCAAGAACAGCCGCCGGGTGGTCTCG
GCATTCATCGCCACGGCCTTTGCCCAGCCCGACCACGCGGCGGCGAAGGCCCAGTGGCGTCTCGTGGCGGACCAGATGCGCGGCAAGCTCCCCAAGCTGG
CCACGCTCATGGACACGGCCGAGGAGGACGTCCTGGCCTATATGACCTTCCCGGCCCAGCATCGCACCAAGCTGCACAGCACCAATCCGATCGAGCGGCT
GAACGGCGAGATCAAGCGACGCACGGACGTCGTCGGCATCTTTCCGAACGAGGCTTCGATCCGGCGCCTCGTCGGCGCGATCCTCATGGAGCAGACCGAG
GAATGGACAGTCCAGCGCGCCAGATACATGACGCTGGAAACGCTCGCGCCCGTCTGCGATGATCTCGGTGTCAGTCTGCCTGCAGCGCAGAGCGACTGAC
CAGCTCGGCCCGCTCGAAAGCGCGAGGCCCATGAGGAGCTACACCACTTCCCGGGACATCATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1203 bp | 400 aa | 97 | 1299 | + | No |
Chemistry : DDE
ORF sequence :
MTKPMMDLRALVEKSADADLLREMIGFAAERLMELEVGAKTGADYGEKTSERLAQRNGYRDRDWQTRAGSVELRIPRLRTGSYFPSFLEPRRSVEKALTA
VIQEAYVHGVSTRSMDDLVQAMGGTGVSKSQVSRLCEEIDERVDAFLTRPIEGEWPYLWIDATYLKVRQGGRIVSVAVTLAVGVNTDGRREVLGMAIGAS
EAEPFWTEFLRDLVRRGLSGVKLVISDAHEGIKAATARVLSTTWQRCRVHFQRNALAHAGKNSRRVVSAFIATAFAQPDHAAAKAQWRLVADQMRGKLPK
LATLMDTAEEDVLAYMTFPAQHRTKLHSTNPIERLNGEIKRRTDVVGIFPNEASIRRLVGAILMEQTEEWTVQRARYMTLETLAPVCDDLGVSLPAAQSD
VIQEAYVHGVSTRSMDDLVQAMGGTGVSKSQVSRLCEEIDERVDAFLTRPIEGEWPYLWIDATYLKVRQGGRIVSVAVTLAVGVNTDGRREVLGMAIGAS
EAEPFWTEFLRDLVRRGLSGVKLVISDAHEGIKAATARVLSTTWQRCRVHFQRNALAHAGKNSRRVVSAFIATAFAQPDHAAAKAQWRLVADQMRGKLPK
LATLMDTAEEDVLAYMTFPAQHRTKLHSTNPIERLNGEIKRRTDVVGIFPNEASIRRLVGAILMEQTEEWTVQRARYMTLETLAPVCDDLGVSLPAAQSD
Blast result :
Comments
ISPebe1 is 85% aa similar to ISAli6.
References