ISEc46

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CU928163 ND Escherichia coli
Escherichia coli UMN026
DNA section
IS Length : 1763 bp

Ends


Left end : CGAAAAACGCCGTAAACCCTCGCCCAATGCGGGCGGGGATATAAGGCGAAAAGCCCGCAGGGCTTTAAAGATCAATCAGGTGTTGACTGACTCTGAACGT II struct. : Yes
Right end : CTCGTCGTTTCTGCCCATGGAGGCCAGCATAAATCCGTCACACAGACGGTTGCGGCTTAAGAAGTGGGAAGCCTCGCCCGACAGGGCGGGGAGCAGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AGGGTAGTCATTGCTTAGATGATGACAGGTAATGGCGtcac

DNA sequence

CGAAAAACGCCGTAAACCCTCGCCCAATGCGGGCGGGGATATAAGGCGAAAAGCCCGCAGGGCTTTAAAGATCAATCAGGTGTTGACTGACTCTGAACGT
AGGCTCTGAGCGTTTCAATCGTTGCCTCTCCGGTGCTACAGACAAAGTACGATCTCGACCACAAAAGCCCCGTTTTACTCTGCATACGTAAATGCGCGTT
CTGCTGGCGTAGCAAACGTGATGATACCGATTTTAAATTATTGACCATCACACTGACCGCCAGTTTTGGCGGGTAGGCAACCAGCAGGTGTACATGGTCT
GGCTCCCCGTCCATCTCAATAATTTCGCATTCAAGCTTTGCCGCAGCGGAGCCAAAAGCCTCACGCAACTGAGCGATCATCTGACTGTCGAATAGTTTGC
GTCGATACTTTGTCGTAAAAATAAGGTGCACAACCAGCTTACTGACACTGTGTCGTTTGCGGAGAAATCCCGCCAGTAAATCATCATGATTACTCAATTG
ATATATTTACCTAAAGTGTTAAAATAAAAGCATTATATCAATGAGCGCTGATTATGTTAAGAGCAACAAAAGTACGCATCTACCCGACACCAGAACAGGC
TGAATTTATCAACGCCCAGTTCGGTGCAGTGCGTTTTGCGTACAACAAAGCTCTGCATATCAAGAAACATTCTTACCAGCGGCACCGCGTAAATTTAAAC
CCGCGTAAAGACCTCAAACCACTGCTTGCAGTGGCGAAGAAATCCCGCCGGTATGGATGGCTTAAAGAATATGATTCTATTGCGTTGCAGCAGGCGGTAA
TTAACCTCGACGTGGCTTTTTCTAACTTTTTCAATCCGAAACTGAAAGCAGGTAAACCTACCTTTAAAAGTAAACACGGCAGACAATCGAGCTATCATTG
TGTTGGCATAAAAGTCCTTGATGGTGCGATAAAAATACCGAAAATCTTGCCGATTGAAGCGCGTTTACATCGTGAAATTACGGGAATGCTGAAAAGTATC
ACGTTGAGCCGCAGCGCAACCGGGAAATACTACGCGTCGTTACTTTGTGACGACGGGATGGAAGCGCCGGCAAAGCCTGCACTGATATCAAATGTGACAG
GGCTGGATATGGGGCTGGCGCATTTTGTCATCAAATCGGACGGCAATAAAATTGCCAGTCCCCGCCACCTAATCAATGCAAGTCGCAACCTTCGCCGGAA
GCAGAAAGCACTGTCCCGTAAGAAAAAAGGGAACGCAAACAGGCGCAAAGCCAGAATACAACTTGCAGCCGTTCACGAACGGGTAGCCAGTGCCCGTGCC
GATTTCCAGCACAAGTTATCTCGCGCAATTGTTGACGAAAACCAAGCGGTAATTGTCGAGACATTGAAAACGGCAAATATGATGAAAAATCACCATCTGG
CTCGTGCGATAGGCGATGCTGGATGGTCTGGATTCATCACAAAACTGGAATACAAAGCAACAGAGAAAGGTGTGCATCTGGTGAAACTGGATCAATGGTT
CGCCAGTTCGAAAACCTGCCACTGCTGCGGTCACAAAATGTCGGAGATGCCATTACATAAGCGCATCTGGCAGTGTCCAGAGTGTGGAGTTGAACATGAC
CGCGATATCAACGCGGCGCTCAACATCAAACGCAAGGGCATACTGGAATTACAAGCGGCGGGACTCGTCGTTTCTGCCCATGGAGGCCAGCATAAATCCG
TCACACAGACGGTTGCGGCTTAAGAAGTGGGAAGCCTCGCCCGACAGGGCGGGGAGCAGTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
426 bp141 aa49772-No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MSNHDDLLAGFLRKRHSVSKLVVHLIFTTKYRRKLFDSQMIAQLREAFGSAAAKLECEIIEMDGEPDHVHLLVAYPPKLAVSVMVNNLKSVSSRLLRQQN
AHLRMQSKTGLLWSRSYFVCSTGEATIETLRAYVQSQSTPD

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1170 bp389 aa5541723+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLRATKVRIYPTPEQAEFINAQFGAVRFAYNKALHIKKHSYQRHRVNLNPRKDLKPLLAVAKKSRRYGWLKEYDSIALQQAVINLDVAFSNFFNPKLKAG
KPTFKSKHGRQSSYHCVGIKVLDGAIKIPKILPIEARLHREITGMLKSITLSRSATGKYYASLLCDDGMEAPAKPALISNVTGLDMGLAHFVIKSDGNKI
ASPRHLINASRNLRRKQKALSRKKKGNANRRKARIQLAAVHERVASARADFQHKLSRAIVDENQAVIVETLKTANMMKNHHLARAIGDAGWSGFITKLEY
KATEKGVHLVKLDQWFASSKTCHCCGHKMSEMPLHKRIWQCPECGVEHDRDINAALNIKRKGILELQAAGLVVSAHGGQHKSVTQTVAA

 

Blast result :
Comments
ISEc46 is 65% aa (TnpA : the transposase) similar to IS609 and 61% aa (TnpB) similar to ISMma19.
References
1] ISfinder annotation (2012)
2] Genoscope -,C.E.A. Direct submission GenBank (2008).