ISEc46
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CU928163 | ND | Escherichia coli | Escherichia coli UMN026 |
DNA section
IS Length : 1763 bp
Ends
Left end : CGAAAAACGCCGTAAACCCTCGCCCAATGCGGGCGGGGATATAAGGCGAAAAGCCCGCAGGGCTTTAAAGATCAATCAGGTGTTGACTGACTCTGAACGT II struct. : Yes
Right end : CTCGTCGTTTCTGCCCATGGAGGCCAGCATAAATCCGTCACACAGACGGTTGCGGCTTAAGAAGTGGGAAGCCTCGCCCGACAGGGCGGGGAGCAGTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AGGGTAGTCATTGC | TTAG | ATGATGACAGGTAATGGCG | tcac |
DNA sequence
CGAAAAACGCCGTAAACCCTCGCCCAATGCGGGCGGGGATATAAGGCGAAAAGCCCGCAGGGCTTTAAAGATCAATCAGGTGTTGACTGACTCTGAACGT
AGGCTCTGAGCGTTTCAATCGTTGCCTCTCCGGTGCTACAGACAAAGTACGATCTCGACCACAAAAGCCCCGTTTTACTCTGCATACGTAAATGCGCGTT
CTGCTGGCGTAGCAAACGTGATGATACCGATTTTAAATTATTGACCATCACACTGACCGCCAGTTTTGGCGGGTAGGCAACCAGCAGGTGTACATGGTCT
GGCTCCCCGTCCATCTCAATAATTTCGCATTCAAGCTTTGCCGCAGCGGAGCCAAAAGCCTCACGCAACTGAGCGATCATCTGACTGTCGAATAGTTTGC
GTCGATACTTTGTCGTAAAAATAAGGTGCACAACCAGCTTACTGACACTGTGTCGTTTGCGGAGAAATCCCGCCAGTAAATCATCATGATTACTCAATTG
ATATATTTACCTAAAGTGTTAAAATAAAAGCATTATATCAATGAGCGCTGATTATGTTAAGAGCAACAAAAGTACGCATCTACCCGACACCAGAACAGGC
TGAATTTATCAACGCCCAGTTCGGTGCAGTGCGTTTTGCGTACAACAAAGCTCTGCATATCAAGAAACATTCTTACCAGCGGCACCGCGTAAATTTAAAC
CCGCGTAAAGACCTCAAACCACTGCTTGCAGTGGCGAAGAAATCCCGCCGGTATGGATGGCTTAAAGAATATGATTCTATTGCGTTGCAGCAGGCGGTAA
TTAACCTCGACGTGGCTTTTTCTAACTTTTTCAATCCGAAACTGAAAGCAGGTAAACCTACCTTTAAAAGTAAACACGGCAGACAATCGAGCTATCATTG
TGTTGGCATAAAAGTCCTTGATGGTGCGATAAAAATACCGAAAATCTTGCCGATTGAAGCGCGTTTACATCGTGAAATTACGGGAATGCTGAAAAGTATC
ACGTTGAGCCGCAGCGCAACCGGGAAATACTACGCGTCGTTACTTTGTGACGACGGGATGGAAGCGCCGGCAAAGCCTGCACTGATATCAAATGTGACAG
GGCTGGATATGGGGCTGGCGCATTTTGTCATCAAATCGGACGGCAATAAAATTGCCAGTCCCCGCCACCTAATCAATGCAAGTCGCAACCTTCGCCGGAA
GCAGAAAGCACTGTCCCGTAAGAAAAAAGGGAACGCAAACAGGCGCAAAGCCAGAATACAACTTGCAGCCGTTCACGAACGGGTAGCCAGTGCCCGTGCC
GATTTCCAGCACAAGTTATCTCGCGCAATTGTTGACGAAAACCAAGCGGTAATTGTCGAGACATTGAAAACGGCAAATATGATGAAAAATCACCATCTGG
CTCGTGCGATAGGCGATGCTGGATGGTCTGGATTCATCACAAAACTGGAATACAAAGCAACAGAGAAAGGTGTGCATCTGGTGAAACTGGATCAATGGTT
CGCCAGTTCGAAAACCTGCCACTGCTGCGGTCACAAAATGTCGGAGATGCCATTACATAAGCGCATCTGGCAGTGTCCAGAGTGTGGAGTTGAACATGAC
CGCGATATCAACGCGGCGCTCAACATCAAACGCAAGGGCATACTGGAATTACAAGCGGCGGGACTCGTCGTTTCTGCCCATGGAGGCCAGCATAAATCCG
TCACACAGACGGTTGCGGCTTAAGAAGTGGGAAGCCTCGCCCGACAGGGCGGGGAGCAGTCAC
AGGCTCTGAGCGTTTCAATCGTTGCCTCTCCGGTGCTACAGACAAAGTACGATCTCGACCACAAAAGCCCCGTTTTACTCTGCATACGTAAATGCGCGTT
CTGCTGGCGTAGCAAACGTGATGATACCGATTTTAAATTATTGACCATCACACTGACCGCCAGTTTTGGCGGGTAGGCAACCAGCAGGTGTACATGGTCT
GGCTCCCCGTCCATCTCAATAATTTCGCATTCAAGCTTTGCCGCAGCGGAGCCAAAAGCCTCACGCAACTGAGCGATCATCTGACTGTCGAATAGTTTGC
GTCGATACTTTGTCGTAAAAATAAGGTGCACAACCAGCTTACTGACACTGTGTCGTTTGCGGAGAAATCCCGCCAGTAAATCATCATGATTACTCAATTG
ATATATTTACCTAAAGTGTTAAAATAAAAGCATTATATCAATGAGCGCTGATTATGTTAAGAGCAACAAAAGTACGCATCTACCCGACACCAGAACAGGC
TGAATTTATCAACGCCCAGTTCGGTGCAGTGCGTTTTGCGTACAACAAAGCTCTGCATATCAAGAAACATTCTTACCAGCGGCACCGCGTAAATTTAAAC
CCGCGTAAAGACCTCAAACCACTGCTTGCAGTGGCGAAGAAATCCCGCCGGTATGGATGGCTTAAAGAATATGATTCTATTGCGTTGCAGCAGGCGGTAA
TTAACCTCGACGTGGCTTTTTCTAACTTTTTCAATCCGAAACTGAAAGCAGGTAAACCTACCTTTAAAAGTAAACACGGCAGACAATCGAGCTATCATTG
TGTTGGCATAAAAGTCCTTGATGGTGCGATAAAAATACCGAAAATCTTGCCGATTGAAGCGCGTTTACATCGTGAAATTACGGGAATGCTGAAAAGTATC
ACGTTGAGCCGCAGCGCAACCGGGAAATACTACGCGTCGTTACTTTGTGACGACGGGATGGAAGCGCCGGCAAAGCCTGCACTGATATCAAATGTGACAG
GGCTGGATATGGGGCTGGCGCATTTTGTCATCAAATCGGACGGCAATAAAATTGCCAGTCCCCGCCACCTAATCAATGCAAGTCGCAACCTTCGCCGGAA
GCAGAAAGCACTGTCCCGTAAGAAAAAAGGGAACGCAAACAGGCGCAAAGCCAGAATACAACTTGCAGCCGTTCACGAACGGGTAGCCAGTGCCCGTGCC
GATTTCCAGCACAAGTTATCTCGCGCAATTGTTGACGAAAACCAAGCGGTAATTGTCGAGACATTGAAAACGGCAAATATGATGAAAAATCACCATCTGG
CTCGTGCGATAGGCGATGCTGGATGGTCTGGATTCATCACAAAACTGGAATACAAAGCAACAGAGAAAGGTGTGCATCTGGTGAAACTGGATCAATGGTT
CGCCAGTTCGAAAACCTGCCACTGCTGCGGTCACAAAATGTCGGAGATGCCATTACATAAGCGCATCTGGCAGTGTCCAGAGTGTGGAGTTGAACATGAC
CGCGATATCAACGCGGCGCTCAACATCAAACGCAAGGGCATACTGGAATTACAAGCGGCGGGACTCGTCGTTTCTGCCCATGGAGGCCAGCATAAATCCG
TCACACAGACGGTTGCGGCTTAAGAAGTGGGAAGCCTCGCCCGACAGGGCGGGGAGCAGTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
426 bp | 141 aa | 497 | 72 | - | No |
Chemistry : Y1
ORF sequence :
MSNHDDLLAGFLRKRHSVSKLVVHLIFTTKYRRKLFDSQMIAQLREAFGSAAAKLECEIIEMDGEPDHVHLLVAYPPKLAVSVMVNNLKSVSSRLLRQQN
AHLRMQSKTGLLWSRSYFVCSTGEATIETLRAYVQSQSTPD
AHLRMQSKTGLLWSRSYFVCSTGEATIETLRAYVQSQSTPD
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1170 bp | 389 aa | 554 | 1723 | + | No |
AG : TnpB
ORF sequence :
MLRATKVRIYPTPEQAEFINAQFGAVRFAYNKALHIKKHSYQRHRVNLNPRKDLKPLLAVAKKSRRYGWLKEYDSIALQQAVINLDVAFSNFFNPKLKAG
KPTFKSKHGRQSSYHCVGIKVLDGAIKIPKILPIEARLHREITGMLKSITLSRSATGKYYASLLCDDGMEAPAKPALISNVTGLDMGLAHFVIKSDGNKI
ASPRHLINASRNLRRKQKALSRKKKGNANRRKARIQLAAVHERVASARADFQHKLSRAIVDENQAVIVETLKTANMMKNHHLARAIGDAGWSGFITKLEY
KATEKGVHLVKLDQWFASSKTCHCCGHKMSEMPLHKRIWQCPECGVEHDRDINAALNIKRKGILELQAAGLVVSAHGGQHKSVTQTVAA
KPTFKSKHGRQSSYHCVGIKVLDGAIKIPKILPIEARLHREITGMLKSITLSRSATGKYYASLLCDDGMEAPAKPALISNVTGLDMGLAHFVIKSDGNKI
ASPRHLINASRNLRRKQKALSRKKKGNANRRKARIQLAAVHERVASARADFQHKLSRAIVDENQAVIVETLKTANMMKNHHLARAIGDAGWSGFITKLEY
KATEKGVHLVKLDQWFASSKTCHCCGHKMSEMPLHKRIWQCPECGVEHDRDINAALNIKRKGILELQAAGLVVSAHGGQHKSVTQTVAA
Blast result :
Comments
ISEc46 is 65% aa (TnpA : the transposase) similar to IS609 and 61% aa (TnpB) similar to ISMma19.
References
1] ISfinder annotation (2012)
2] Genoscope -,C.E.A. Direct submission GenBank (2008).
2] Genoscope -,C.E.A. Direct submission GenBank (2008).