ISErsp1

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002124 ND Erwinia sp.
Erwinia sp. Ejp617
DNA section
IS Length : 1201 bp

Ends


IR Length : 21/26

IRL : TGTATTAGTCGCGACTTGATCTGACATATGGCCTTGAAAGGTTGAGAGTT
IRR : TGTATTAGCTCAGACCTGATCTGACAGTTACCGGTTATTTATACAGGTGT

Insertion site


Left flankDirect repeatRight flankDR Length
TAATAAAGCAGGCGGTAAGGTTTAAATCAACATCAATTGC0

DNA sequence

TGTATTAGTCGCGACTTGATCTGACATATGGCCTTGAAAGGTTGAGAGTTACCGGTTTTGATATGGGTGTCGAATCCTTATACAAAACACGAGGTAACTC
TCATGCTTCATACTACCAATCCCGTCATCAAACACAAAACGGGTTTGCTCAATCTGGCTGAAGAACTCAGCAACGTCTCTAAAGCCTGTAAAATCACGGG
CGTCTCCCGTGATACATTTTACCGTTATCGTGAACTGGCTGACGAAGGCGGTGTGGATGCGCTGATTAACCGTAGCCGACGCACTCCCAATCTCAAAAAT
CGTACTGACGATGCAACTGAACAGGCCGTTGTTAGTTATGCAGTTGCGTTCCCTGCTCATGGTCAGCACCGGAGCAGCAATGAGTTGCGTAAACAGGGCG
TTTTTATCTCAGGAAGCGGTGTCCGTTCTGTCTGGCTGCGCCACAACCTTGAGAATTTCAAAAAGCGCCTTAAAGCACTGGAAGAAAAAGTGGCTCGTGA
GGGTATCGAACTGACTGACAGCCAGATCGCCGCACTGGAACGTAAAGCCAGTGATGACGAGGCCTGTGGCGAAATTGAAACCGCTCATCCGGGTTATCTT
GGCTCTCAGGACACGTTCTACGTGGGGAACCTGAAAGGTGTCGGGCGTATTTATCAGCAGACGTTCGTGGATACCTACTCGAAGGTCGCTCACTGCAAAC
TGTATGTCACCAAAACGCCGATTACAGCGGCAGACCTGTTGAATGACCGTGTGCTGCCGTTCTACGCGTCTCAGGGACTGCCCATGCTGAGAATACTGAC
CGACAGAGGCACAGAGTACTGTGGCAAAGTAGAGCAGCATGATTACCAGCTGTATCTGGCAATAAATGATATCGACCACACGAAGACCAAAGCGATGTCG
CCGCAAACGAACGGCATCTGCGAACGGTTCCACAGGACGATATTGCAGGAGTTTTATCAGGTAGCGTTCCGCAAAAAACTGTATGGCGAACTCGATACAT
TACAATCGGATCTTGATGAATGGCTGGCTCACTATAATAATGAGCGAACCCATCAGGGGAAAATGTGCTGTGGCCGGACGCCAATGGAAACATTACTTGA
TGGAAAACACATCTGGGCTGAGAAAAATTTAAGCCGGATGTAATCTGACAGACACCTGTATAAATAACCGGTAACTGTCAGATCAGGTCTGAGCTAATAC
A
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1041 bp346 aa1031143+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLHTTNPVIKHKTGLLNLAEELSNVSKACKITGVSRDTFYRYRELADEGGVDALINRSRRTPNLKNRTDDATEQAVVSYAVAFPAHGQHRSSNELRKQGV
FISGSGVRSVWLRHNLENFKKRLKALEEKVAREGIELTDSQIAALERKASDDEACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFVDTYSKVAHCKL
YVTKTPITAADLLNDRVLPFYASQGLPMLRILTDRGTEYCGKVEQHDYQLYLAINDIDHTKTKAMSPQTNGICERFHRTILQEFYQVAFRKKLYGELDTL
QSDLDEWLAHYNNERTHQGKMCCGRTPMETLLDGKHIWAEKNLSRM

 

Blast result :
Comments
ISErsp1 is 92% aa similar to ISSod13.
References
1] ISfinder annotation (2012)
2] Park,D.H., Thapa,S.P., Choi,B.S., Kim,W.S., Hur,J.H., Cho,J.M., Lim,J.S., Choi,I.Y. and Lim,C.K. (2010) J. Bacteriol. 193 (2), 586-587