ISErsp1
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002124 | ND | Erwinia sp. | Erwinia sp. Ejp617 |
DNA section
IS Length : 1201 bp
Ends
IR Length : 21/26
IRL : TGTATTAGTCGCGACTTGATCTGACATATGGCCTTGAAAGGTTGAGAGTT
IRR : TGTATTAGCTCAGACCTGATCTGACAGTTACCGGTTATTTATACAGGTGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAATAAAGCAGGCGGTAAGG | TTTAAATCAACATCAATTGC | 0 |
DNA sequence
TGTATTAGTCGCGACTTGATCTGACATATGGCCTTGAAAGGTTGAGAGTTACCGGTTTTGATATGGGTGTCGAATCCTTATACAAAACACGAGGTAACTC
TCATGCTTCATACTACCAATCCCGTCATCAAACACAAAACGGGTTTGCTCAATCTGGCTGAAGAACTCAGCAACGTCTCTAAAGCCTGTAAAATCACGGG
CGTCTCCCGTGATACATTTTACCGTTATCGTGAACTGGCTGACGAAGGCGGTGTGGATGCGCTGATTAACCGTAGCCGACGCACTCCCAATCTCAAAAAT
CGTACTGACGATGCAACTGAACAGGCCGTTGTTAGTTATGCAGTTGCGTTCCCTGCTCATGGTCAGCACCGGAGCAGCAATGAGTTGCGTAAACAGGGCG
TTTTTATCTCAGGAAGCGGTGTCCGTTCTGTCTGGCTGCGCCACAACCTTGAGAATTTCAAAAAGCGCCTTAAAGCACTGGAAGAAAAAGTGGCTCGTGA
GGGTATCGAACTGACTGACAGCCAGATCGCCGCACTGGAACGTAAAGCCAGTGATGACGAGGCCTGTGGCGAAATTGAAACCGCTCATCCGGGTTATCTT
GGCTCTCAGGACACGTTCTACGTGGGGAACCTGAAAGGTGTCGGGCGTATTTATCAGCAGACGTTCGTGGATACCTACTCGAAGGTCGCTCACTGCAAAC
TGTATGTCACCAAAACGCCGATTACAGCGGCAGACCTGTTGAATGACCGTGTGCTGCCGTTCTACGCGTCTCAGGGACTGCCCATGCTGAGAATACTGAC
CGACAGAGGCACAGAGTACTGTGGCAAAGTAGAGCAGCATGATTACCAGCTGTATCTGGCAATAAATGATATCGACCACACGAAGACCAAAGCGATGTCG
CCGCAAACGAACGGCATCTGCGAACGGTTCCACAGGACGATATTGCAGGAGTTTTATCAGGTAGCGTTCCGCAAAAAACTGTATGGCGAACTCGATACAT
TACAATCGGATCTTGATGAATGGCTGGCTCACTATAATAATGAGCGAACCCATCAGGGGAAAATGTGCTGTGGCCGGACGCCAATGGAAACATTACTTGA
TGGAAAACACATCTGGGCTGAGAAAAATTTAAGCCGGATGTAATCTGACAGACACCTGTATAAATAACCGGTAACTGTCAGATCAGGTCTGAGCTAATAC
A
TCATGCTTCATACTACCAATCCCGTCATCAAACACAAAACGGGTTTGCTCAATCTGGCTGAAGAACTCAGCAACGTCTCTAAAGCCTGTAAAATCACGGG
CGTCTCCCGTGATACATTTTACCGTTATCGTGAACTGGCTGACGAAGGCGGTGTGGATGCGCTGATTAACCGTAGCCGACGCACTCCCAATCTCAAAAAT
CGTACTGACGATGCAACTGAACAGGCCGTTGTTAGTTATGCAGTTGCGTTCCCTGCTCATGGTCAGCACCGGAGCAGCAATGAGTTGCGTAAACAGGGCG
TTTTTATCTCAGGAAGCGGTGTCCGTTCTGTCTGGCTGCGCCACAACCTTGAGAATTTCAAAAAGCGCCTTAAAGCACTGGAAGAAAAAGTGGCTCGTGA
GGGTATCGAACTGACTGACAGCCAGATCGCCGCACTGGAACGTAAAGCCAGTGATGACGAGGCCTGTGGCGAAATTGAAACCGCTCATCCGGGTTATCTT
GGCTCTCAGGACACGTTCTACGTGGGGAACCTGAAAGGTGTCGGGCGTATTTATCAGCAGACGTTCGTGGATACCTACTCGAAGGTCGCTCACTGCAAAC
TGTATGTCACCAAAACGCCGATTACAGCGGCAGACCTGTTGAATGACCGTGTGCTGCCGTTCTACGCGTCTCAGGGACTGCCCATGCTGAGAATACTGAC
CGACAGAGGCACAGAGTACTGTGGCAAAGTAGAGCAGCATGATTACCAGCTGTATCTGGCAATAAATGATATCGACCACACGAAGACCAAAGCGATGTCG
CCGCAAACGAACGGCATCTGCGAACGGTTCCACAGGACGATATTGCAGGAGTTTTATCAGGTAGCGTTCCGCAAAAAACTGTATGGCGAACTCGATACAT
TACAATCGGATCTTGATGAATGGCTGGCTCACTATAATAATGAGCGAACCCATCAGGGGAAAATGTGCTGTGGCCGGACGCCAATGGAAACATTACTTGA
TGGAAAACACATCTGGGCTGAGAAAAATTTAAGCCGGATGTAATCTGACAGACACCTGTATAAATAACCGGTAACTGTCAGATCAGGTCTGAGCTAATAC
A
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1041 bp | 346 aa | 103 | 1143 | + | No |
Chemistry : DDE
ORF sequence :
MLHTTNPVIKHKTGLLNLAEELSNVSKACKITGVSRDTFYRYRELADEGGVDALINRSRRTPNLKNRTDDATEQAVVSYAVAFPAHGQHRSSNELRKQGV
FISGSGVRSVWLRHNLENFKKRLKALEEKVAREGIELTDSQIAALERKASDDEACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFVDTYSKVAHCKL
YVTKTPITAADLLNDRVLPFYASQGLPMLRILTDRGTEYCGKVEQHDYQLYLAINDIDHTKTKAMSPQTNGICERFHRTILQEFYQVAFRKKLYGELDTL
QSDLDEWLAHYNNERTHQGKMCCGRTPMETLLDGKHIWAEKNLSRM
FISGSGVRSVWLRHNLENFKKRLKALEEKVAREGIELTDSQIAALERKASDDEACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFVDTYSKVAHCKL
YVTKTPITAADLLNDRVLPFYASQGLPMLRILTDRGTEYCGKVEQHDYQLYLAINDIDHTKTKAMSPQTNGICERFHRTILQEFYQVAFRKKLYGELDTL
QSDLDEWLAHYNNERTHQGKMCCGRTPMETLLDGKHIWAEKNLSRM
Blast result :
Comments
ISErsp1 is 92% aa similar to ISSod13.
References
1] ISfinder annotation (2012)
2] Park,D.H., Thapa,S.P., Choi,B.S., Kim,W.S., Hur,J.H., Cho,J.M., Lim,J.S., Choi,I.Y. and Lim,C.K. (2010) J. Bacteriol. 193 (2), 586-587
2] Park,D.H., Thapa,S.P., Choi,B.S., Kim,W.S., Hur,J.H., Cho,J.M., Lim,J.S., Choi,I.Y. and Lim,C.K. (2010) J. Bacteriol. 193 (2), 586-587