ISEc40
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004431 | ND | Escherichia coli | Escherichia coli CFT073 |
DNA section
IS Length : 1097 bp
Ends
IR Length : 14/25
IRL : TACCCGTGATCATTGAAGATGCTTGATTTTTCAGCAACAGAAGATCATGC
IRR : TACTCAATAAACCTCAAGATGCGGGTGTGAGCACCTGAAAGTGATCGTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAAATTGATA | TA | TAACATATGT | 2 |
DNA sequence
TACCCGTGATCATTGAAGATGCTTGATTTTTCAGCAACAGAAGATCATGCTGTCCAACATGAAAATATTCATTACTGAGCAACAAAAAGCTGAACTTGAA
CGCCTTCATGATTCCAGTCGTGACGGGCGAGTCAGAGATCGTATTAAAGCCATTCTTCTGGCTTCCGAAGGCTGGAGTTCTGCCATGATTGCTCAGGCTT
TACGCCTGCATCAGACAACGATTGATCACCATATCAGCGAATTCCTGAATAAAGGAAAACTGAAGCCCGAAAACGGCGGCTCAGACAGCAAACTCAGTGC
TGAACAAACGGCCTTTTTAATCAGCCAGTTATCCGATAATTTATTTCACCATACCCGCGATGTTATTGCGTTTGTCACCCGGACATGGAACATCATTTTC
AGCATTCCGGGGATGAATAAGTGGCTGCATCGTAATGGTGTCACCTACAAAAAACCGTCAGGCGTCCCCCATAAATTCAGTGAAGAGAAACAAAGGCAAT
TCATTGAATACTATAAGGAACTGAAAACAACTGTGGGTGATGAGCCGATTCTTTTTATTGATGGAGTCCATCCGACTCAGGCCACTAAAATCAGCTATGG
CTGGATACGCAAAGGCCAGAAAAAAGCAGTAAAAACAACAGGCAGCCGCACACGCCTGAATATCATGGGGGCGCTGAATCTGAAAGCACTGACGTCACCG
CTAATCTGCGAATATAAAACCATTAATGAATATAATGTATCCCGTTTTTTCAATGAGATACGAAAGGTTTATCCTGATTATAACCAAAAAATCCACGTTA
TTCTGGATGGAGCAGGTTACCACCGTTCACAGTTAGTGAAAGACTGGGCGGAAGTGGTAAATATCAGGCTGCATTACCTTCCCCCTTACAGTCCAAACCT
GAATCCGATAGAAAGAATGTGGAAATTAATGAACGAACATGCCCGGAATAATCGCTACTTCAGCAGTACGCGAGAGTTCAGGGAAGCAATATCTGTCTTT
TTTAACCAGACACTGCCGGATATAGCGGACTCACTGACATCCCGAATTAACGATCACTTTCAGGTGCTCACACCCGCATCTTGAGGTTTATTGAGTA
CGCCTTCATGATTCCAGTCGTGACGGGCGAGTCAGAGATCGTATTAAAGCCATTCTTCTGGCTTCCGAAGGCTGGAGTTCTGCCATGATTGCTCAGGCTT
TACGCCTGCATCAGACAACGATTGATCACCATATCAGCGAATTCCTGAATAAAGGAAAACTGAAGCCCGAAAACGGCGGCTCAGACAGCAAACTCAGTGC
TGAACAAACGGCCTTTTTAATCAGCCAGTTATCCGATAATTTATTTCACCATACCCGCGATGTTATTGCGTTTGTCACCCGGACATGGAACATCATTTTC
AGCATTCCGGGGATGAATAAGTGGCTGCATCGTAATGGTGTCACCTACAAAAAACCGTCAGGCGTCCCCCATAAATTCAGTGAAGAGAAACAAAGGCAAT
TCATTGAATACTATAAGGAACTGAAAACAACTGTGGGTGATGAGCCGATTCTTTTTATTGATGGAGTCCATCCGACTCAGGCCACTAAAATCAGCTATGG
CTGGATACGCAAAGGCCAGAAAAAAGCAGTAAAAACAACAGGCAGCCGCACACGCCTGAATATCATGGGGGCGCTGAATCTGAAAGCACTGACGTCACCG
CTAATCTGCGAATATAAAACCATTAATGAATATAATGTATCCCGTTTTTTCAATGAGATACGAAAGGTTTATCCTGATTATAACCAAAAAATCCACGTTA
TTCTGGATGGAGCAGGTTACCACCGTTCACAGTTAGTGAAAGACTGGGCGGAAGTGGTAAATATCAGGCTGCATTACCTTCCCCCTTACAGTCCAAACCT
GAATCCGATAGAAAGAATGTGGAAATTAATGAACGAACATGCCCGGAATAATCGCTACTTCAGCAGTACGCGAGAGTTCAGGGAAGCAATATCTGTCTTT
TTTAACCAGACACTGCCGGATATAGCGGACTCACTGACATCCCGAATTAACGATCACTTTCAGGTGCTCACACCCGCATCTTGAGGTTTATTGAGTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1038 bp | 345 aa | 47 | 1084 | + | No |
Chemistry : DDE
ORF sequence :
MLSNMKIFITEQQKAELERLHDSSRDGRVRDRIKAILLASEGWSSAMIAQALRLHQTTIDHHISEFLNKGKLKPENGGSDSKLSAEQTAFLISQLSDNLF
HHTRDVIAFVTRTWNIIFSIPGMNKWLHRNGVTYKKPSGVPHKFSEEKQRQFIEYYKELKTTVGDEPILFIDGVHPTQATKISYGWIRKGQKKAVKTTGS
RTRLNIMGALNLKALTSPLICEYKTINEYNVSRFFNEIRKVYPDYNQKIHVILDGAGYHRSQLVKDWAEVVNIRLHYLPPYSPNLNPIERMWKLMNEHAR
NNRYFSSTREFREAISVFFNQTLPDIADSLTSRINDHFQVLTPAS
HHTRDVIAFVTRTWNIIFSIPGMNKWLHRNGVTYKKPSGVPHKFSEEKQRQFIEYYKELKTTVGDEPILFIDGVHPTQATKISYGWIRKGQKKAVKTTGS
RTRLNIMGALNLKALTSPLICEYKTINEYNVSRFFNEIRKVYPDYNQKIHVILDGAGYHRSQLVKDWAEVVNIRLHYLPPYSPNLNPIERMWKLMNEHAR
NNRYFSSTREFREAISVFFNQTLPDIADSLTSRINDHFQVLTPAS
Blast result :
Comments
ISEc40 is 84% aa similar to ISPlu3.
References
1] ISfinder annotation (2012)
2] Welch,R.A., Burland,V., Plunkett,G. III, Redford,P., Roesch,P., Rasko,D., Buckles,E.L., Liou,S.R., Boutin,A., Hackett,J., Stroud,D., Mayhew,G.F., Rose,D.J., Zhou,S., Schwartz,D.C., Perna,N.T., Mobley,H.L., Donnenberg,M.S. and Blattner,F.R. (2002) Proc. Natl. Acad. Sci. U.S.A. 99 (26), 17020-17024
2] Welch,R.A., Burland,V., Plunkett,G. III, Redford,P., Roesch,P., Rasko,D., Buckles,E.L., Liou,S.R., Boutin,A., Hackett,J., Stroud,D., Mayhew,G.F., Rose,D.J., Zhou,S., Schwartz,D.C., Perna,N.T., Mobley,H.L., Donnenberg,M.S. and Blattner,F.R. (2002) Proc. Natl. Acad. Sci. U.S.A. 99 (26), 17020-17024