ISEc40

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004431 ND Escherichia coli
Escherichia coli CFT073
DNA section
IS Length : 1097 bp

Ends


IR Length : 14/25

IRL : TACCCGTGATCATTGAAGATGCTTGATTTTTCAGCAACAGAAGATCATGC
IRR : TACTCAATAAACCTCAAGATGCGGGTGTGAGCACCTGAAAGTGATCGTTA

Insertion site


Left flankDirect repeatRight flankDR Length
CAAATTGATATATAACATATGT2

DNA sequence

TACCCGTGATCATTGAAGATGCTTGATTTTTCAGCAACAGAAGATCATGCTGTCCAACATGAAAATATTCATTACTGAGCAACAAAAAGCTGAACTTGAA
CGCCTTCATGATTCCAGTCGTGACGGGCGAGTCAGAGATCGTATTAAAGCCATTCTTCTGGCTTCCGAAGGCTGGAGTTCTGCCATGATTGCTCAGGCTT
TACGCCTGCATCAGACAACGATTGATCACCATATCAGCGAATTCCTGAATAAAGGAAAACTGAAGCCCGAAAACGGCGGCTCAGACAGCAAACTCAGTGC
TGAACAAACGGCCTTTTTAATCAGCCAGTTATCCGATAATTTATTTCACCATACCCGCGATGTTATTGCGTTTGTCACCCGGACATGGAACATCATTTTC
AGCATTCCGGGGATGAATAAGTGGCTGCATCGTAATGGTGTCACCTACAAAAAACCGTCAGGCGTCCCCCATAAATTCAGTGAAGAGAAACAAAGGCAAT
TCATTGAATACTATAAGGAACTGAAAACAACTGTGGGTGATGAGCCGATTCTTTTTATTGATGGAGTCCATCCGACTCAGGCCACTAAAATCAGCTATGG
CTGGATACGCAAAGGCCAGAAAAAAGCAGTAAAAACAACAGGCAGCCGCACACGCCTGAATATCATGGGGGCGCTGAATCTGAAAGCACTGACGTCACCG
CTAATCTGCGAATATAAAACCATTAATGAATATAATGTATCCCGTTTTTTCAATGAGATACGAAAGGTTTATCCTGATTATAACCAAAAAATCCACGTTA
TTCTGGATGGAGCAGGTTACCACCGTTCACAGTTAGTGAAAGACTGGGCGGAAGTGGTAAATATCAGGCTGCATTACCTTCCCCCTTACAGTCCAAACCT
GAATCCGATAGAAAGAATGTGGAAATTAATGAACGAACATGCCCGGAATAATCGCTACTTCAGCAGTACGCGAGAGTTCAGGGAAGCAATATCTGTCTTT
TTTAACCAGACACTGCCGGATATAGCGGACTCACTGACATCCCGAATTAACGATCACTTTCAGGTGCTCACACCCGCATCTTGAGGTTTATTGAGTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1038 bp345 aa471084+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLSNMKIFITEQQKAELERLHDSSRDGRVRDRIKAILLASEGWSSAMIAQALRLHQTTIDHHISEFLNKGKLKPENGGSDSKLSAEQTAFLISQLSDNLF
HHTRDVIAFVTRTWNIIFSIPGMNKWLHRNGVTYKKPSGVPHKFSEEKQRQFIEYYKELKTTVGDEPILFIDGVHPTQATKISYGWIRKGQKKAVKTTGS
RTRLNIMGALNLKALTSPLICEYKTINEYNVSRFFNEIRKVYPDYNQKIHVILDGAGYHRSQLVKDWAEVVNIRLHYLPPYSPNLNPIERMWKLMNEHAR
NNRYFSSTREFREAISVFFNQTLPDIADSLTSRINDHFQVLTPAS

 

Blast result :
Comments
ISEc40 is 84% aa similar to ISPlu3.
References
1] ISfinder annotation (2012)
2] Welch,R.A., Burland,V., Plunkett,G. III, Redford,P., Roesch,P., Rasko,D., Buckles,E.L., Liou,S.R., Boutin,A., Hackett,J., Stroud,D., Mayhew,G.F., Rose,D.J., Zhou,S., Schwartz,D.C., Perna,N.T., Mobley,H.L., Donnenberg,M.S. and Blattner,F.R. (2002) Proc. Natl. Acad. Sci. U.S.A. 99 (26), 17020-17024