ISEc38
- Family ISL3
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AJ303141 | ND | Escherichia coli | Escherichia coli pathogenicity island I |
DNA section
IS Length : 1722 bp
Ends
IR Length : 21/23
IRL : GGTTCTTCCGCAACTTGGGTGGAAGAAAATGGATGAAACTTTCTGGTGAA
IRR : GGCTCTTCCGCAACCTGGGTGGAGATTTTCATGCCAGTGGACTCATTACC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTGCAATAGT | ACTTTCCGTC | 0 |
DNA sequence
GGTTCTTCCGCAACTTGGGTGGAAGAAAATGGATGAAACTTTCTGGTGAACAAAGATCTAAGCTGTTTTAAGTCATGGGCAACTCAATGCACTCTCTTAA
GACACTTCTACAGTTACCTTGCGGATGGCGATGCAGTCGACAAATTATTAGCTCTGACGGTATAACCCTCCATCTCCACGGAAAACGCAAAAAAGCACAA
TGTCCTGAATGCTTTAAGCGTAGCGACTCTGTTCATAGTTGTCGTCGGCGCCGGATACAGCATCTACCCTGCTCAGGACATACGCTATGGCTTGTATTTT
CCGTCCGCCACTGGTACTGCCGTAACCCGGCTTGTTCACGTAAAATTTTTGCCGGGTCGCTTGCTCCCTTCGCCGGTTCACACCAACAGTCTTCACAGGC
GTTACAAAATTTACAACGTCAACTGGGATTAATCGCCGGAGGTGAGGCCGGGAAACGGGCAGCAACGGCAGTGGGGCTCCGTTGCAGTGCTGATACTCTC
CTTCGCAGGGTTATCAATACCCCGGAGACGAAACAGTCAGGCGCGCCTCATGTCGGTATTGATGAGTGGGCGTGGCATCGGGGCCACCGTTACGGTACGT
TAATCGTCAATCTTGATACTCACCGTCCCCTCGTCCTGCTTCCCGGCCGTGATCAGCGTACGCTGGCGACCTGGTTCAGAAAATATCCGGAAATACAGGT
TGTCTCGCGTGATCGCAGTGGAGTCTATGCGACAGCAGCACGTGAAGGTGCACCTCAGGCCAGACAGGTGGCCGATCGATGGCATCTGCTAAAAAATATT
GGCGATGCGCTTGAACGAATGATGTACAGACATATACCTCTGATACGTCTTGTTGCCAGTGAGTTGTCACCAAAGAAATCACCTGATCCAGAACCATCTG
TGCCTGCAGCATCGCTCCGTCGTCCGGAACGCCTAAAACAACAAACCCGCAAAAAACGGCATCAGCGTTGGACAGAGGTTATGGCCCTGCATAACAAGGA
ATGTAGTTTCAGGGAAATATCCCGTATTACAGGCCTGTCGCGTGTGACAGTCAGTCGCTGGGTGCGTTCAGGAACATTCCCTGAAATGTCAACCCGACCT
CCAAAGCGAGGGCTTCTGGACCCATGGAGGGAGTGGTTAAAAGAGCAACGAGAAAGTAGTAATTATAACGCCAGCCGGATATGGCGGGAAATGGTGGCCC
GGGGATTTACAGGCAGTGAAACCATCGTCAGGGATGCGGTTGCCAAATGGCGTAAAGGCTGGAACCCACCGGTTACTACTGCCGTCAGACTTCCTTCAGT
GTCCCGGGTAAGCCGCTGGTTGATGCCCTGGAGAATAACCAGGGATGAAGAAAATTATGCTTCCCGATTTATTAGTCTGATGTGTGAAAAAGAACCTGAG
CTGAAAATAGCGCAGCAACTGGCACTCGAGTTCTACCGTATTCTGAAAACCCAAAATAAATCACAGCTAAGCAGTTGGTTCAATCGAGTCCACGAAAGCG
GTTCAGCAGAATTTCGGCGCGTGGCGGCGGGGATGGAAGCTGATGCTGCAGCTATATGTGAGGCAATCAGTAGTCGCTGGAGTAATGGTGTTGTCGAAGG
TCATGTAAATCGCCTGAAGATGCTGAAACGCCAGATGTATGGTCGAGCAGGATTTGAACTACTCAGGCAGAGGGTAATGAGTCCACTGGCATGAAAATCT
CCACCCAGGTTGCGGAAGAGCC
GACACTTCTACAGTTACCTTGCGGATGGCGATGCAGTCGACAAATTATTAGCTCTGACGGTATAACCCTCCATCTCCACGGAAAACGCAAAAAAGCACAA
TGTCCTGAATGCTTTAAGCGTAGCGACTCTGTTCATAGTTGTCGTCGGCGCCGGATACAGCATCTACCCTGCTCAGGACATACGCTATGGCTTGTATTTT
CCGTCCGCCACTGGTACTGCCGTAACCCGGCTTGTTCACGTAAAATTTTTGCCGGGTCGCTTGCTCCCTTCGCCGGTTCACACCAACAGTCTTCACAGGC
GTTACAAAATTTACAACGTCAACTGGGATTAATCGCCGGAGGTGAGGCCGGGAAACGGGCAGCAACGGCAGTGGGGCTCCGTTGCAGTGCTGATACTCTC
CTTCGCAGGGTTATCAATACCCCGGAGACGAAACAGTCAGGCGCGCCTCATGTCGGTATTGATGAGTGGGCGTGGCATCGGGGCCACCGTTACGGTACGT
TAATCGTCAATCTTGATACTCACCGTCCCCTCGTCCTGCTTCCCGGCCGTGATCAGCGTACGCTGGCGACCTGGTTCAGAAAATATCCGGAAATACAGGT
TGTCTCGCGTGATCGCAGTGGAGTCTATGCGACAGCAGCACGTGAAGGTGCACCTCAGGCCAGACAGGTGGCCGATCGATGGCATCTGCTAAAAAATATT
GGCGATGCGCTTGAACGAATGATGTACAGACATATACCTCTGATACGTCTTGTTGCCAGTGAGTTGTCACCAAAGAAATCACCTGATCCAGAACCATCTG
TGCCTGCAGCATCGCTCCGTCGTCCGGAACGCCTAAAACAACAAACCCGCAAAAAACGGCATCAGCGTTGGACAGAGGTTATGGCCCTGCATAACAAGGA
ATGTAGTTTCAGGGAAATATCCCGTATTACAGGCCTGTCGCGTGTGACAGTCAGTCGCTGGGTGCGTTCAGGAACATTCCCTGAAATGTCAACCCGACCT
CCAAAGCGAGGGCTTCTGGACCCATGGAGGGAGTGGTTAAAAGAGCAACGAGAAAGTAGTAATTATAACGCCAGCCGGATATGGCGGGAAATGGTGGCCC
GGGGATTTACAGGCAGTGAAACCATCGTCAGGGATGCGGTTGCCAAATGGCGTAAAGGCTGGAACCCACCGGTTACTACTGCCGTCAGACTTCCTTCAGT
GTCCCGGGTAAGCCGCTGGTTGATGCCCTGGAGAATAACCAGGGATGAAGAAAATTATGCTTCCCGATTTATTAGTCTGATGTGTGAAAAAGAACCTGAG
CTGAAAATAGCGCAGCAACTGGCACTCGAGTTCTACCGTATTCTGAAAACCCAAAATAAATCACAGCTAAGCAGTTGGTTCAATCGAGTCCACGAAAGCG
GTTCAGCAGAATTTCGGCGCGTGGCGGCGGGGATGGAAGCTGATGCTGCAGCTATATGTGAGGCAATCAGTAGTCGCTGGAGTAATGGTGTTGTCGAAGG
TCATGTAAATCGCCTGAAGATGCTGAAACGCCAGATGTATGGTCGAGCAGGATTTGAACTACTCAGGCAGAGGGTAATGAGTCCACTGGCATGAAAATCT
CCACCCAGGTTGCGGAAGAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1620 bp | 539 aa | 75 | 1694 | + | No |
Chemistry : Unknow
ORF sequence :
MGNSMHSLKTLLQLPCGWRCSRQIISSDGITLHLHGKRKKAQCPECFKRSDSVHSCRRRRIQHLPCSGHTLWLVFSVRHWYCRNPACSRKIFAGSLAPFA
GSHQQSSQALQNLQRQLGLIAGGEAGKRAATAVGLRCSADTLLRRVINTPETKQSGAPHVGIDEWAWHRGHRYGTLIVNLDTHRPLVLLPGRDQRTLATW
FRKYPEIQVVSRDRSGVYATAAREGAPQARQVADRWHLLKNIGDALERMMYRHIPLIRLVASELSPKKSPDPEPSVPAASLRRPERLKQQTRKKRHQRWT
EVMALHNKECSFREISRITGLSRVTVSRWVRSGTFPEMSTRPPKRGLLDPWREWLKEQRESSNYNASRIWREMVARGFTGSETIVRDAVAKWRKGWNPPV
TTAVRLPSVSRVSRWLMPWRITRDEENYASRFISLMCEKEPELKIAQQLALEFYRILKTQNKSQLSSWFNRVHESGSAEFRRVAAGMEADAAAICEAISS
RWSNGVVEGHVNRLKMLKRQMYGRAGFELLRQRVMSPLA
GSHQQSSQALQNLQRQLGLIAGGEAGKRAATAVGLRCSADTLLRRVINTPETKQSGAPHVGIDEWAWHRGHRYGTLIVNLDTHRPLVLLPGRDQRTLATW
FRKYPEIQVVSRDRSGVYATAAREGAPQARQVADRWHLLKNIGDALERMMYRHIPLIRLVASELSPKKSPDPEPSVPAASLRRPERLKQQTRKKRHQRWT
EVMALHNKECSFREISRITGLSRVTVSRWVRSGTFPEMSTRPPKRGLLDPWREWLKEQRESSNYNASRIWREMVARGFTGSETIVRDAVAKWRKGWNPPV
TTAVRLPSVSRVSRWLMPWRITRDEENYASRFISLMCEKEPELKIAQQLALEFYRILKTQNKSQLSSWFNRVHESGSAEFRRVAAGMEADAAAICEAISS
RWSNGVVEGHVNRLKMLKRQMYGRAGFELLRQRVMSPLA
Blast result :
Comments
ISEc38 is 51% aa similar to ISAzba9.
References
1] ISfinder annotation (2012)
2] Jores,J., Rumer,L., Kiessling,S., Kaper,J.B. and Wieler,L.H. (2001) FEMS Microbiol. Lett. 204 (1), 75-79
3] Rumer,L., Jores,J., Kirsch,P., Cavignac,Y., Zehmke,K. and Wieler,L.H. (2003) Int. J. Med. Microbiol. 292 (7-8), 463-475.
4] Jores,J., Wagner,S., Rumer,L., Eichberg,J., Laturnus,C., Kirsch,P., Schierack,P., Tschape,H. and Wieler,L.H. (2005) Int. J. Med. Microbiol. 294 (7), 417-425
2] Jores,J., Rumer,L., Kiessling,S., Kaper,J.B. and Wieler,L.H. (2001) FEMS Microbiol. Lett. 204 (1), 75-79
3] Rumer,L., Jores,J., Kirsch,P., Cavignac,Y., Zehmke,K. and Wieler,L.H. (2003) Int. J. Med. Microbiol. 292 (7-8), 463-475.
4] Jores,J., Wagner,S., Rumer,L., Eichberg,J., Laturnus,C., Kirsch,P., Schierack,P., Tschape,H. and Wieler,L.H. (2005) Int. J. Med. Microbiol. 294 (7), 417-425