ISPa37
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AFXK01000001 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa |
DNA section
IS Length : 1454 bp
Ends
IR Length : 24/28
IRL : GGGTGCATTCAACCGGTCGTTGCAACACCTTTGATCGTGGAGGTGTTTAT
IRR : GGGTGGATTCAATCGGCCGTCGCAACACTGGGTTGCTGAATAGATGTTAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGGCGTACT | TGGCTGCCCT | 0 | |
GCGCAGTATT | TTGGCTGCCA | 0 | |
CTGGCGTACT | TGACTGCCCT | 0 | |
AGGGCAGCCA | AAGCGCAACC | 0 |
DNA sequence
GGGTGCATTCAACCGGTCGTTGCAACACCTTTGATCGTGGAGGTGTTTATGGGGCGACCTGCAGGGTGGATGCAGGAGTTGACGGGGCGAGGGGCAATGC
GCTCGCCAGGTGCCCCGTCACTTCGCCGAGAGATCGAGCGGCTATTTTGGGAACAGATCGCAACCGGGATCACAAGCGAAAGGGCGGCAGAGGCTATTAG
CGTATCGTCAGCGGTAGGCACACGCTGGTTCCGTCATCGCGGCGGAATGCCATTATTCATGTCGAACCACATATCAGGAAGGTACTTGTCGTTCGCTGAG
CGAGAAGAGATCGGGCTGCTCCGGGCGCAAAGTGTTGGTGTGCGTGAGATTGCTCGCCGTCTTGGACGAAGTCCGTCGACCATTTCACGGGAGCTGACTC
GTAACGCAGCAACTCGTAGCGGCCGGCTCGAGTATCGCGCTTCAGTCGCGCAGTGGAAGGCGGAATTGGTTGCCAAGAGACCGAAGCCGGCGAGATTGGT
GACCAACCCGCAACTGCGCCATTACGTGCAAGAGCGCTTGGAAGGCAAGGTTCATAACGCTAATGGCCGTGAGATTGCCGGTCCTCTACAGGCACCATTC
AAGGGACGAAATAAACCACATCGTGGTGACCGTAAATGGGTCAATGGTTGGTCACCCGAACAGATTGCCAACCGGCTGCAAATCGACTTCCCGGATGACA
AGTCCATGCGTATTTCTCACGAAGCCATATATCAGGCTCTCTACATTCAAGGGCGAGGCGCTCTCAAGCATGAACTGGTGAGTTGCCTGCGTACTGGGCG
GGCGTTGCGCGTACCAAGAGCCAGGGCGCAGGCCAAAGCATGGGCACATGTCAGCGAGGATGTCATGATTTCCAGCCGTCCTGCTGAGGTGGAGGATCGT
GCCTTACCAGGGCATTGGGAGGGTGATCTGATCATTGGCCTGAACCGATCCGCCATCGGGACGCTGGTCGAGCGCTCAAGCCGATTTACCATGCTCGTTC
ATCTGCCTCGCGAGGAAGGTTACGGGCTGACTCCCCGGACGAAGAACGGCCCCGCTCTTGCTGGCTACGGTGCTGTCACCATGACCAATGCATTGAAGAG
GGCCGTGACTGGCTTACCCGTTCAGCTGTGGCGATCATTGACTTGGGATCGTGGAAAGGAGTTATCGGATCACGTCCGCTTTACCATTGAGTCTGGAGTA
AAAGTCTTCTTTGCCGACCCTCACAGTCCATGGCAGCGCGGTACGAACGAGAATACAAACGGTCTTCTACGGCAATATTTCCCGAAAGGCACCGACCTGT
CTCGTTGGAGTTACCAAGAGATCCAAGCCGTAGCCCATACGCTGAACACTAGACCCAGGAAAACGCTCGGCTGGAAAACACCTGCCGAGGTACTGAACGA
CTATCTAACATCTATTCAGCAACCCAGTGTTGCGACGGCCGATTGAATCCACCC
GCTCGCCAGGTGCCCCGTCACTTCGCCGAGAGATCGAGCGGCTATTTTGGGAACAGATCGCAACCGGGATCACAAGCGAAAGGGCGGCAGAGGCTATTAG
CGTATCGTCAGCGGTAGGCACACGCTGGTTCCGTCATCGCGGCGGAATGCCATTATTCATGTCGAACCACATATCAGGAAGGTACTTGTCGTTCGCTGAG
CGAGAAGAGATCGGGCTGCTCCGGGCGCAAAGTGTTGGTGTGCGTGAGATTGCTCGCCGTCTTGGACGAAGTCCGTCGACCATTTCACGGGAGCTGACTC
GTAACGCAGCAACTCGTAGCGGCCGGCTCGAGTATCGCGCTTCAGTCGCGCAGTGGAAGGCGGAATTGGTTGCCAAGAGACCGAAGCCGGCGAGATTGGT
GACCAACCCGCAACTGCGCCATTACGTGCAAGAGCGCTTGGAAGGCAAGGTTCATAACGCTAATGGCCGTGAGATTGCCGGTCCTCTACAGGCACCATTC
AAGGGACGAAATAAACCACATCGTGGTGACCGTAAATGGGTCAATGGTTGGTCACCCGAACAGATTGCCAACCGGCTGCAAATCGACTTCCCGGATGACA
AGTCCATGCGTATTTCTCACGAAGCCATATATCAGGCTCTCTACATTCAAGGGCGAGGCGCTCTCAAGCATGAACTGGTGAGTTGCCTGCGTACTGGGCG
GGCGTTGCGCGTACCAAGAGCCAGGGCGCAGGCCAAAGCATGGGCACATGTCAGCGAGGATGTCATGATTTCCAGCCGTCCTGCTGAGGTGGAGGATCGT
GCCTTACCAGGGCATTGGGAGGGTGATCTGATCATTGGCCTGAACCGATCCGCCATCGGGACGCTGGTCGAGCGCTCAAGCCGATTTACCATGCTCGTTC
ATCTGCCTCGCGAGGAAGGTTACGGGCTGACTCCCCGGACGAAGAACGGCCCCGCTCTTGCTGGCTACGGTGCTGTCACCATGACCAATGCATTGAAGAG
GGCCGTGACTGGCTTACCCGTTCAGCTGTGGCGATCATTGACTTGGGATCGTGGAAAGGAGTTATCGGATCACGTCCGCTTTACCATTGAGTCTGGAGTA
AAAGTCTTCTTTGCCGACCCTCACAGTCCATGGCAGCGCGGTACGAACGAGAATACAAACGGTCTTCTACGGCAATATTTCCCGAAAGGCACCGACCTGT
CTCGTTGGAGTTACCAAGAGATCCAAGCCGTAGCCCATACGCTGAACACTAGACCCAGGAAAACGCTCGGCTGGAAAACACCTGCCGAGGTACTGAACGA
CTATCTAACATCTATTCAGCAACCCAGTGTTGCGACGGCCGATTGAATCCACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1377 bp | 458 aa | 70 | 1446 | + | No |
Chemistry : DDE
ORF sequence :
MQELTGRGAMRSPGAPSLRREIERLFWEQIATGITSERAAEAISVSSAVGTRWFRHRGGMPLFMSNHISGRYLSFAEREEIGLLRAQSVGVREIARRLGR
SPSTISRELTRNAATRSGRLEYRASVAQWKAELVAKRPKPARLVTNPQLRHYVQERLEGKVHNANGREIAGPLQAPFKGRNKPHRGDRKWVNGWSPEQIA
NRLQIDFPDDKSMRISHEAIYQALYIQGRGALKHELVSCLRTGRALRVPRARAQAKAWAHVSEDVMISSRPAEVEDRALPGHWEGDLIIGLNRSAIGTLV
ERSSRFTMLVHLPREEGYGLTPRTKNGPALAGYGAVTMTNALKRAVTGLPVQLWRSLTWDRGKELSDHVRFTIESGVKVFFADPHSPWQRGTNENTNGLL
RQYFPKGTDLSRWSYQEIQAVAHTLNTRPRKTLGWKTPAEVLNDYLTSIQQPSVATAD
SPSTISRELTRNAATRSGRLEYRASVAQWKAELVAKRPKPARLVTNPQLRHYVQERLEGKVHNANGREIAGPLQAPFKGRNKPHRGDRKWVNGWSPEQIA
NRLQIDFPDDKSMRISHEAIYQALYIQGRGALKHELVSCLRTGRALRVPRARAQAKAWAHVSEDVMISSRPAEVEDRALPGHWEGDLIIGLNRSAIGTLV
ERSSRFTMLVHLPREEGYGLTPRTKNGPALAGYGAVTMTNALKRAVTGLPVQLWRSLTWDRGKELSDHVRFTIESGVKVFFADPHSPWQRGTNENTNGLL
RQYFPKGTDLSRWSYQEIQAVAHTLNTRPRKTLGWKTPAEVLNDYLTSIQQPSVATAD
Blast result :
Comments
ISPa37 is 80% aa similar to ISMsm8.
References
1] ISfinder annotation (2011).
2] Boyle,B., Fernandez,L., Kukavica-Ibrulj,I., Laroche,J., Hancock,R.E.W. and Levesque,R.C. (2011) Direct submission.
3] Martin Holm Rau (2011) Direct submission to ISfinder.
2] Boyle,B., Fernandez,L., Kukavica-Ibrulj,I., Laroche,J., Hancock,R.E.W. and Levesque,R.C. (2011) Direct submission.
3] Martin Holm Rau (2011) Direct submission to ISfinder.