ISPa37

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AFXK01000001 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa
DNA section
IS Length : 1454 bp

Ends


IR Length : 24/28

IRL : GGGTGCATTCAACCGGTCGTTGCAACACCTTTGATCGTGGAGGTGTTTAT
IRR : GGGTGGATTCAATCGGCCGTCGCAACACTGGGTTGCTGAATAGATGTTAG

Insertion site


Left flankDirect repeatRight flankDR Length
CTGGCGTACTTGGCTGCCCT0
GCGCAGTATTTTGGCTGCCA0
CTGGCGTACTTGACTGCCCT0
AGGGCAGCCAAAGCGCAACC0

DNA sequence

GGGTGCATTCAACCGGTCGTTGCAACACCTTTGATCGTGGAGGTGTTTATGGGGCGACCTGCAGGGTGGATGCAGGAGTTGACGGGGCGAGGGGCAATGC
GCTCGCCAGGTGCCCCGTCACTTCGCCGAGAGATCGAGCGGCTATTTTGGGAACAGATCGCAACCGGGATCACAAGCGAAAGGGCGGCAGAGGCTATTAG
CGTATCGTCAGCGGTAGGCACACGCTGGTTCCGTCATCGCGGCGGAATGCCATTATTCATGTCGAACCACATATCAGGAAGGTACTTGTCGTTCGCTGAG
CGAGAAGAGATCGGGCTGCTCCGGGCGCAAAGTGTTGGTGTGCGTGAGATTGCTCGCCGTCTTGGACGAAGTCCGTCGACCATTTCACGGGAGCTGACTC
GTAACGCAGCAACTCGTAGCGGCCGGCTCGAGTATCGCGCTTCAGTCGCGCAGTGGAAGGCGGAATTGGTTGCCAAGAGACCGAAGCCGGCGAGATTGGT
GACCAACCCGCAACTGCGCCATTACGTGCAAGAGCGCTTGGAAGGCAAGGTTCATAACGCTAATGGCCGTGAGATTGCCGGTCCTCTACAGGCACCATTC
AAGGGACGAAATAAACCACATCGTGGTGACCGTAAATGGGTCAATGGTTGGTCACCCGAACAGATTGCCAACCGGCTGCAAATCGACTTCCCGGATGACA
AGTCCATGCGTATTTCTCACGAAGCCATATATCAGGCTCTCTACATTCAAGGGCGAGGCGCTCTCAAGCATGAACTGGTGAGTTGCCTGCGTACTGGGCG
GGCGTTGCGCGTACCAAGAGCCAGGGCGCAGGCCAAAGCATGGGCACATGTCAGCGAGGATGTCATGATTTCCAGCCGTCCTGCTGAGGTGGAGGATCGT
GCCTTACCAGGGCATTGGGAGGGTGATCTGATCATTGGCCTGAACCGATCCGCCATCGGGACGCTGGTCGAGCGCTCAAGCCGATTTACCATGCTCGTTC
ATCTGCCTCGCGAGGAAGGTTACGGGCTGACTCCCCGGACGAAGAACGGCCCCGCTCTTGCTGGCTACGGTGCTGTCACCATGACCAATGCATTGAAGAG
GGCCGTGACTGGCTTACCCGTTCAGCTGTGGCGATCATTGACTTGGGATCGTGGAAAGGAGTTATCGGATCACGTCCGCTTTACCATTGAGTCTGGAGTA
AAAGTCTTCTTTGCCGACCCTCACAGTCCATGGCAGCGCGGTACGAACGAGAATACAAACGGTCTTCTACGGCAATATTTCCCGAAAGGCACCGACCTGT
CTCGTTGGAGTTACCAAGAGATCCAAGCCGTAGCCCATACGCTGAACACTAGACCCAGGAAAACGCTCGGCTGGAAAACACCTGCCGAGGTACTGAACGA
CTATCTAACATCTATTCAGCAACCCAGTGTTGCGACGGCCGATTGAATCCACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1377 bp458 aa701446+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQELTGRGAMRSPGAPSLRREIERLFWEQIATGITSERAAEAISVSSAVGTRWFRHRGGMPLFMSNHISGRYLSFAEREEIGLLRAQSVGVREIARRLGR
SPSTISRELTRNAATRSGRLEYRASVAQWKAELVAKRPKPARLVTNPQLRHYVQERLEGKVHNANGREIAGPLQAPFKGRNKPHRGDRKWVNGWSPEQIA
NRLQIDFPDDKSMRISHEAIYQALYIQGRGALKHELVSCLRTGRALRVPRARAQAKAWAHVSEDVMISSRPAEVEDRALPGHWEGDLIIGLNRSAIGTLV
ERSSRFTMLVHLPREEGYGLTPRTKNGPALAGYGAVTMTNALKRAVTGLPVQLWRSLTWDRGKELSDHVRFTIESGVKVFFADPHSPWQRGTNENTNGLL
RQYFPKGTDLSRWSYQEIQAVAHTLNTRPRKTLGWKTPAEVLNDYLTSIQQPSVATAD

 

Blast result :
Comments
ISPa37 is 80% aa similar to ISMsm8.
References
1] ISfinder annotation (2011).
2] Boyle,B., Fernandez,L., Kukavica-Ibrulj,I., Laroche,J., Hancock,R.E.W. and Levesque,R.C. (2011) Direct submission.
3] Martin Holm Rau (2011) Direct submission to ISfinder.