ISPa36
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AEVV01000002 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa 138244 PA13 |
DNA section
IS Length : 2468 bp
Ends
IR Length : 23/27
IRL : TGTTGGCGCGCATCCAGAACTGACCCACTTTCGGCGGTGATGCGCGGGTA
IRR : TGTTGGCGCGCACTTAAAACTGACCCAGGCTGCGCGTTGAACTTTGACCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAAGTGCCT | GACGc/t | TGGCAGCGGG | 7 |
DNA sequence
TGTTGGCGCGCATCCAGAACTGACCCACTTTCGGCGGTGATGCGCGGGTAAAACTGACCCACCTGAAGCCCACATCCTGAGCATCTTTTGCTCGGGGGAT
TTCAGGAGTGATCACCATGGTCATGTTGGCCAAGATCCGGCGGATGCATTTCCGCGATGGCCTGCCGCTGCGCGAGATCGCCAAGCGCACGGGCCTATCC
CGCAATACCATCCGGCGATGGCTGCGCAGCGGCCAGTCCGAGCCGGTCTATCCCAGGCGAGCCTCGCCCTCCCGGCTCGATCCCTACCGGTCCCAGTTGG
AGACGTGGCTGCGTGCCGACAGCCATCGTCCCCGGCGGGAACAACGCACCGCCAAGGTGCTGTTCTCGCAGTTGCAGGCGATCGGCTATCCGGGCACCTA
CACCCGGGTGACGGCCTTCATCCGCCAGTGGAAGGCGGCCGGCGGCGCCAGCCGCCGCCCGGCCTTCGTGCCGTTGCACTTTCCTCCGGGTGAAGCCTTC
CAGTTCGACTGGAGCCGCGAGTACGCCTTCGTCGGCAGCCACGCCAAGATGCCGCTGGATCTCGCCCACGTGAAGCTGGCCTGCAGCCGCGCCTTCTGGT
TGGTGGCCTATCCCACCCAGAGCCACGAGATGCTGTTCGATGCTCATACCCAGGCGTTTACCGCCTTCGGTGGCGTGCCGCGCCGCGGCATCTACGACAA
CATGAAGACGGCGGTGGACGGGATCGGCCAGCACCGGGAACGGCGGGTCAACGCCCGCTTCCACGCCATGACCAGCCACTACCTGTTCGCCGCGGAGTTC
TGCAACCGCGCCGCGGGTTGGGAGAAGGGGCGGGTCGAGAAGAACGTGCAGGACCGGCGCCGACAGATCTGGATCGAGGCCGGGGCCCGCCACTGGCCAG
ATCTGGACACCCTCAATGCCTGGCTCGCCAGCGAGTGCCGCGCCGCTTGGCCGATGCAGGCGCATCCGGATGCCTCCGACATCACCGTGGCCGAAGCTCT
GGAGGACGAACAGCCCCACCTGATGCCGATGCCCGCGCCCTTCGACGGCTACATCGAGCGGCCGGTGCGGGTCAGTTCGACCGCGCTGGTCAGCTTCCAG
CGCAACCGCTACAGCGTGCCGTGCGAACACGCCCACGCCGTCGCCAGCCTGCGCGTGTATCCCTTCGAACTGGCCGTGGTGGTCGGCGAGGCCGAGGTCG
CCCGCCACCGGCGCAGCTTCGAGCGTGATCGGGTCCACTACGACTGGCAGCACTACATCGCCCTGGTCCAGCGCAAGCCGGGGGCACTGCGTGACGGCGC
GCCGTTCCTGTCCATGCCCGATCCGCTGCGCAAGCTGCAGCAGGTGTTGCTGCGCCAGCCTCACGGCGACCGCGCCATGGCCCAGGTGCTGGCCGCCGTA
CCCGTGCACGGGCTCGAAGCGGTACTGGTGGCGGTGGAACTGGCACTCGAGTCCGGCCTGGTGCGCGCCGACCACGTGCTCAACGTGCTGGGGCGATTGC
AGCATCCGGACCGCACGATCGAGACGGTCGCCTCGCGAGTGACGCTGCGTCATCCGCCGGTGTCCGATCCGGCCCGCTACGACGCCCTGCGGGAGGCAGA
TCATGTCGACGCCTGACCTGCCGCTGCGCATGCAGCAGCTCAAGCTGCACGGCATGGCCAGCCAGTGGCCCGAACTGCTGGCCAAGATGCGCCTGCACAC
CATGGAGCCCGAACACTGGATGGCCGAACTGCTGCAGGCCGAGTCCGCCGAACGGCAGGTTCGTGCCCAGGCCAACCAGATGAAGGCCGCACGTTTCCCC
GTCCATCGTGACCTGCTCGGGTTCGACTTCGCGGCCAGTCCCGTTGATCGCGCACTGGTCGAACGACTCCACCAGGGTGACTTCATCCACACCCCCGAGA
ACGTCGTCCTTGTCGGTGGACCGGGCACCGGCAAGACCCACCTGGCCACCGCCATCGGCATCCAGGCCGTGCGCCAGCATCGCCTGCGCGTGCGCTTCTT
CTCCACCATCGAACTGGTCAATGCGCTGGAGAAGGAACAGGCCCAGGGCAAGGCCGGGCAGATCGCCCTGCGCCTGACCTATGCCGACCTGGTCATCCTC
GATGAACTGGGCTACCTGCCGTTCACCCCCTCAGGCGGCGCGCTGCTGTTCCACCTGATCAGCAAGCTCTACGAGCGCACCAGCCTCGCCATCACCACCA
ACTTGGCCTTCTCCGAATGGGGTCAGGTGTTCGGCGACGCCAAGATGACCACCGCGCTGCTGGATCGCATCACCCACCACTGCCACATCCTGGAGACCGG
CAACGACTCCTGGCGGCTGCGCAACAGCACCGCCGCCAACAAGACCAAAGCCAGAATCAGGGCAAAGGAGGCCACCACCCAGACCACCAACTGATACCCT
CAGCCCCGTACACCGGGTGGGTCAAAGTTCAACGCGCAGCCTGGGTCAGTTTTAAGTGCGCGCCAACA
TTCAGGAGTGATCACCATGGTCATGTTGGCCAAGATCCGGCGGATGCATTTCCGCGATGGCCTGCCGCTGCGCGAGATCGCCAAGCGCACGGGCCTATCC
CGCAATACCATCCGGCGATGGCTGCGCAGCGGCCAGTCCGAGCCGGTCTATCCCAGGCGAGCCTCGCCCTCCCGGCTCGATCCCTACCGGTCCCAGTTGG
AGACGTGGCTGCGTGCCGACAGCCATCGTCCCCGGCGGGAACAACGCACCGCCAAGGTGCTGTTCTCGCAGTTGCAGGCGATCGGCTATCCGGGCACCTA
CACCCGGGTGACGGCCTTCATCCGCCAGTGGAAGGCGGCCGGCGGCGCCAGCCGCCGCCCGGCCTTCGTGCCGTTGCACTTTCCTCCGGGTGAAGCCTTC
CAGTTCGACTGGAGCCGCGAGTACGCCTTCGTCGGCAGCCACGCCAAGATGCCGCTGGATCTCGCCCACGTGAAGCTGGCCTGCAGCCGCGCCTTCTGGT
TGGTGGCCTATCCCACCCAGAGCCACGAGATGCTGTTCGATGCTCATACCCAGGCGTTTACCGCCTTCGGTGGCGTGCCGCGCCGCGGCATCTACGACAA
CATGAAGACGGCGGTGGACGGGATCGGCCAGCACCGGGAACGGCGGGTCAACGCCCGCTTCCACGCCATGACCAGCCACTACCTGTTCGCCGCGGAGTTC
TGCAACCGCGCCGCGGGTTGGGAGAAGGGGCGGGTCGAGAAGAACGTGCAGGACCGGCGCCGACAGATCTGGATCGAGGCCGGGGCCCGCCACTGGCCAG
ATCTGGACACCCTCAATGCCTGGCTCGCCAGCGAGTGCCGCGCCGCTTGGCCGATGCAGGCGCATCCGGATGCCTCCGACATCACCGTGGCCGAAGCTCT
GGAGGACGAACAGCCCCACCTGATGCCGATGCCCGCGCCCTTCGACGGCTACATCGAGCGGCCGGTGCGGGTCAGTTCGACCGCGCTGGTCAGCTTCCAG
CGCAACCGCTACAGCGTGCCGTGCGAACACGCCCACGCCGTCGCCAGCCTGCGCGTGTATCCCTTCGAACTGGCCGTGGTGGTCGGCGAGGCCGAGGTCG
CCCGCCACCGGCGCAGCTTCGAGCGTGATCGGGTCCACTACGACTGGCAGCACTACATCGCCCTGGTCCAGCGCAAGCCGGGGGCACTGCGTGACGGCGC
GCCGTTCCTGTCCATGCCCGATCCGCTGCGCAAGCTGCAGCAGGTGTTGCTGCGCCAGCCTCACGGCGACCGCGCCATGGCCCAGGTGCTGGCCGCCGTA
CCCGTGCACGGGCTCGAAGCGGTACTGGTGGCGGTGGAACTGGCACTCGAGTCCGGCCTGGTGCGCGCCGACCACGTGCTCAACGTGCTGGGGCGATTGC
AGCATCCGGACCGCACGATCGAGACGGTCGCCTCGCGAGTGACGCTGCGTCATCCGCCGGTGTCCGATCCGGCCCGCTACGACGCCCTGCGGGAGGCAGA
TCATGTCGACGCCTGACCTGCCGCTGCGCATGCAGCAGCTCAAGCTGCACGGCATGGCCAGCCAGTGGCCCGAACTGCTGGCCAAGATGCGCCTGCACAC
CATGGAGCCCGAACACTGGATGGCCGAACTGCTGCAGGCCGAGTCCGCCGAACGGCAGGTTCGTGCCCAGGCCAACCAGATGAAGGCCGCACGTTTCCCC
GTCCATCGTGACCTGCTCGGGTTCGACTTCGCGGCCAGTCCCGTTGATCGCGCACTGGTCGAACGACTCCACCAGGGTGACTTCATCCACACCCCCGAGA
ACGTCGTCCTTGTCGGTGGACCGGGCACCGGCAAGACCCACCTGGCCACCGCCATCGGCATCCAGGCCGTGCGCCAGCATCGCCTGCGCGTGCGCTTCTT
CTCCACCATCGAACTGGTCAATGCGCTGGAGAAGGAACAGGCCCAGGGCAAGGCCGGGCAGATCGCCCTGCGCCTGACCTATGCCGACCTGGTCATCCTC
GATGAACTGGGCTACCTGCCGTTCACCCCCTCAGGCGGCGCGCTGCTGTTCCACCTGATCAGCAAGCTCTACGAGCGCACCAGCCTCGCCATCACCACCA
ACTTGGCCTTCTCCGAATGGGGTCAGGTGTTCGGCGACGCCAAGATGACCACCGCGCTGCTGGATCGCATCACCCACCACTGCCACATCCTGGAGACCGG
CAACGACTCCTGGCGGCTGCGCAACAGCACCGCCGCCAACAAGACCAAAGCCAGAATCAGGGCAAAGGAGGCCACCACCCAGACCACCAACTGATACCCT
CAGCCCCGTACACCGGGTGGGTCAAAGTTCAACGCGCAGCCTGGGTCAGTTTTAAGTGCGCGCCAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1500 bp | 499 aa | 117 | 1616 | + | No |
Chemistry : DDE
ORF sequence :
MVMLAKIRRMHFRDGLPLREIAKRTGLSRNTIRRWLRSGQSEPVYPRRASPSRLDPYRSQLETWLRADSHRPRREQRTAKVLFSQLQAIGYPGTYTRVTA
FIRQWKAAGGASRRPAFVPLHFPPGEAFQFDWSREYAFVGSHAKMPLDLAHVKLACSRAFWLVAYPTQSHEMLFDAHTQAFTAFGGVPRRGIYDNMKTAV
DGIGQHRERRVNARFHAMTSHYLFAAEFCNRAAGWEKGRVEKNVQDRRRQIWIEAGARHWPDLDTLNAWLASECRAAWPMQAHPDASDITVAEALEDEQP
HLMPMPAPFDGYIERPVRVSSTALVSFQRNRYSVPCEHAHAVASLRVYPFELAVVVGEAEVARHRRSFERDRVHYDWQHYIALVQRKPGALRDGAPFLSM
PDPLRKLQQVLLRQPHGDRAMAQVLAAVPVHGLEAVLVAVELALESGLVRADHVLNVLGRLQHPDRTIETVASRVTLRHPPVSDPARYDALREADHVDA
FIRQWKAAGGASRRPAFVPLHFPPGEAFQFDWSREYAFVGSHAKMPLDLAHVKLACSRAFWLVAYPTQSHEMLFDAHTQAFTAFGGVPRRGIYDNMKTAV
DGIGQHRERRVNARFHAMTSHYLFAAEFCNRAAGWEKGRVEKNVQDRRRQIWIEAGARHWPDLDTLNAWLASECRAAWPMQAHPDASDITVAEALEDEQP
HLMPMPAPFDGYIERPVRVSSTALVSFQRNRYSVPCEHAHAVASLRVYPFELAVVVGEAEVARHRRSFERDRVHYDWQHYIALVQRKPGALRDGAPFLSM
PDPLRKLQQVLLRQPHGDRAMAQVLAAVPVHGLEAVLVAVELALESGLVRADHVLNVLGRLQHPDRTIETVASRVTLRHPPVSDPARYDALREADHVDA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
792 bp | 263 aa | 1603 | 2394 | + | No |
AG : IS21 helper
ORF sequence :
MSTPDLPLRMQQLKLHGMASQWPELLAKMRLHTMEPEHWMAELLQAESAERQVRAQANQMKAARFPVHRDLLGFDFAASPVDRALVERLHQGDFIHTPEN
VVLVGGPGTGKTHLATAIGIQAVRQHRLRVRFFSTIELVNALEKEQAQGKAGQIALRLTYADLVILDELGYLPFTPSGGALLFHLISKLYERTSLAITTN
LAFSEWGQVFGDAKMTTALLDRITHHCHILETGNDSWRLRNSTAANKTKARIRAKEATTQTTN
VVLVGGPGTGKTHLATAIGIQAVRQHRLRVRFFSTIELVNALEKEQAQGKAGQIALRLTYADLVILDELGYLPFTPSGGALLFHLISKLYERTSLAITTN
LAFSEWGQVFGDAKMTTALLDRITHHCHILETGNDSWRLRNSTAANKTKARIRAKEATTQTTN
Blast result :
Comments
ISPa36 is 71% (istA, the Transposase) and 77% (istB) aa similar to ISAav1.
References
1] ISfinder annotation (2011).
2] Soares-Castro,P., Marques,D., Demyanchuk,S., Faustino,A. and Santos,P.M. (2011) J. Bacteriol. 193 (19), 5573.
3] Martin Holm Rau (2011) Direct submission to ISfinder.
2] Soares-Castro,P., Marques,D., Demyanchuk,S., Faustino,A. and Santos,P.M. (2011) J. Bacteriol. 193 (19), 5573.
3] Martin Holm Rau (2011) Direct submission to ISfinder.