ISAcsp2

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Acinetobacter sp.
Acinetobacter genomospecies 15TU
Acinetobacter sp.
DNA section
IS Length : 972 bp

Ends


IR Length : 11/17

IRL : CCTGAATCGCGGATAAGAAATTGACTTGAAAAATAAGAGGACTAGAGCCA
IRR : CCCGGATCCTGCTTAAGCCGATGATTCCTTAATTTGAATTGTTGGCTTAT

Insertion site


Left flankDirect repeatRight flankDR Length
GAGTTATATCTTATCTTAAACAAATCTCT9

DNA sequence

CCTGAATCGCGGATAAGAAATTGACTTGAAAAATAAGAGGACTAGAGCCATCAGTTGAGTTACCACACCAAACTCACAACTCTAGTCCTGATGTTCAATA
GTACCGAATTATTCTGCGTAATTGATGATTTTTTTCTTAAATTTGAATCAACTTATTGGGAGTTTCTCAAACAAAACTGTGGTTCCTTAAGAATCAGAAC
TGCTAAACTCACAATTTCAGAAATCTGCTTTATTGCCATTTGGTACAAATGCTCTCATTTCAATAATTTCAAAGCCTTTTTCACCTGGTTAAAAGAAGAT
AAAAGCCATTTATTTAAGTACTTGCCTTGCTATCAAAGGATGATTCATCTGATCAATATGCACCAATTGGCCCTACACGCTTTACATGTGGCGCTGATGA
AAGACCAAGCTACACAATATTTATGGATTGATTCAACAACTCTGCCAGTTTGTAAAAATCAACGTATTCAGCGTCATAAATCATTAGTCCAAATTGCATC
ACGTGGTAGAAGCTCAATGGGCTGGTTTTATGGCTGTAAATTACATATTGCGATGAATCAATTTGGTGAAATTGCTTGTTCTGCTTTATCAAATGGACAT
GTTGCTGACATAAAAATGGTTGAGCAATTGGTTGCTGGTATAGAAGCATTACTTTACGGGGATCGAGGTTACATCAGCCAAGAATTAAAAATCAGATTGA
AAGATCAAGGTATTGATTTGATTACTTATCATCGAAAGAATATGCGGGCTATTCAACTCTGTGCATCAGATGAATATCACCTAAGACAACGCAATAAGAT
AGAAACATTATTCAGTTTATTGAAGGGGCAATACAATTTAGTGACGAGTCAAGCACGTAGTCTTCATGGATTTCTGAGTGGAATTTACGCCTCACTATGT
GCATATCAATTAACCCATCAAAATAAGCCAACAATTCAAATTAAGGAATCATCGGCTTAAGCAGGATCCGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
870 bp289 aa91960+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFNSTELFCVIDDFFLKFESTYWEFLKQNCGSLRIRTAKLTISEICFIAIWYKCSHFNNFKAFFTWLKEDKSHLFKYLPCYQRMIHLINMHQLALHALHV
ALMKDQATQYLWIDSTTLPVCKNQRIQRHKSLVQIASRGRSSMGWFYGCKLHIAMNQFGEIACSALSNGHVADIKMVEQLVAGIEALLYGDRGYISQELK
IRLKDQGIDLITYHRKNMRAIQLCASDEYHLRQRNKIETLFSLLKGQYNLVTSQARSLHGFLSGIYASLCAYQLTHQNKPTIQIKESSA

 

Blast result :
Comments
ISAcsp2 is 76% aa similar to ISAba4.
References
1] Poirel L. (2011) Direct submission.