ISCbo4

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_015425 ND Clostridium botulinum
Clostridium botulinum BKT015925
Clostridium botulinum BKT015925 p3BKT015925
Clostridium botulinum BKT015925 p1BKT015925
Clostridium botulinum BKT015925 p2BKT015925
DNA section
IS Length : 1517 bp

Ends


IR Length : 18/23

IRL : GGGGATGTAGGTTGATTTGTGTAAAAACAAATTAACCTACATCTTTTTTG
IRR : GAGAATATAGATAGATTTGTGTACTTCTAATTAGTATCAGAAAATATTAC

Insertion site


Left flankDirect repeatRight flankDR Length
TAAACAAAAGAAAAGGGTATGTAGATAA8
ATAAAATTAAAATACTAAAGTTATAATT8
AGTACTATAAACTTAAAAGGCTGTTAAT8
AGCATGAGGTTATAATTCATTTTTATTT8
TATACTTTTAATTTTTAAAGGAGTTCTT8
ATATTTAAAAACAAATCTTGTTATCTAT8
TAAAGTTGTATAAAACTTTAATATTTAA8
CATGAAAGTTCACAATTGCAACAATTAT8

DNA sequence

GGGGATGTAGGTTGATTTGTGTAAAAACAAATTAACCTACATCTTTTTTGTATGGAAAATTGGTTAGTTTGGAATAATATACTTATAAGAATTTAGGAGG
AATCTAAATGAGAAATTTTGAAGTACCTGATTTTGATTACAAAGAAGAAGTTAAGAAATGCAAAAGTTTAGATGATGTTATGGGTAAAAACGGATTAATA
CAAAGAATGTTAAAAGACGTTATTCAAAATATATTGGAAGCAGAAATGGAAGATCATTTGGGAAGAGATAAATATGAAAGAAATTCTGAAAATAATAGTA
AAAATTATCGCAATGGCTATAGTAAAAAGAATATACGCAGTAGCTTTGGAGATATAGATGTAGATATTCCAAGGGATAGAAATGCTGAATTCGAACCAAA
AGTAATTAAAAAGTATGAAACTGTTTGCAATGAACTAGACAAAAAGGTTATTGGTCTTTATGCACGGGGTATGTCTACACGTGATATACAAGCGGAAATA
GAAGACCTTTATGGGATTACTATATCACCATCAATGGTATCAAAAATCACTGATAAGGTAATTGGCGCAGCCACTGCGTGGCAAAACAGAACATTGGATA
GAATTTATCCTATAGTATATATGGATGCTATGCATTTTAAAGTAAGAGATGACAATAGAATTGTTAGTAAAGCAGCATACATATGTATGGCATATGATAT
GAGTGGTCATAAAGATATTTTAGGTATTTGGGTTGGAGAATCCGAAGGAGCGAAGTTTTGGTTGTCAGTATGCAATGATTTGAAGAATAGAGGTGTTAAA
CAAATACTAATTGCATGTATGGATGGGCTTAGAGGTTTACCAGATGCTATAAAAACCGTTTATCCAGAAGTAAGTATACAAACATGTATAGTACATCAAA
TTAGAAATTCTCTGAAATACATAGCGTCAAAAGATAAGAAAGAATTCATTAAAGATTTAAAATTAATTTATAAAGCAACTACCGAAGAGCTAGCGCTCCT
AGAACTTGATAATCTCAAGGAAAAATGGGGTTCTAAGTACGGTATAGTTATTGATTCTTGGTATAATAATTGGGATAATTTATCCACATTCTTCGAATTT
TCACCTGAGATTAGAAAAATGATATATACTACAAATGCCCTAGAAGGATTTAATAGACAGATTAGAAAATTTACTAAAACCAGAACCGTATTTCCTACGG
ATGAATCCTTAAAAAAGTCATTATATCTAGCAACCATGGAGATAATGGAAAAATGGACTTCACCAAGACAAAATTGGGCTCTTACACTAGGTCAATTAAC
AATTACATTTGGTAATAAAATAGATGAATTTTTAGCATAATAGCTTGTACTTTTTAGAAATTTTATGTATATTTAAAACTTTATTACACACACTATAATT
AGATATAATTAGCCATTATTAGTATGTTTTAAATTTAAAAAAATATTACTAGAAAGGTGAATTTCCAGTAATATTTTCTGATACTAATTAGAAGTACACA
AATCTATCTATATTCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1233 bp410 aa1081340+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRNFEVPDFDYKEEVKKCKSLDDVMGKNGLIQRMLKDVIQNILEAEMEDHLGRDKYERNSENNSKNYRNGYSKKNIRSSFGDIDVDIPRDRNAEFEPKVI
KKYETVCNELDKKVIGLYARGMSTRDIQAEIEDLYGITISPSMVSKITDKVIGAATAWQNRTLDRIYPIVYMDAMHFKVRDDNRIVSKAAYICMAYDMSG
HKDILGIWVGESEGAKFWLSVCNDLKNRGVKQILIACMDGLRGLPDAIKTVYPEVSIQTCIVHQIRNSLKYIASKDKKEFIKDLKLIYKATTEELALLEL
DNLKEKWGSKYGIVIDSWYNNWDNLSTFFEFSPEIRKMIYTTNALEGFNRQIRKFTKTRTVFPTDESLKKSLYLATMEIMEKWTSPRQNWALTLGQLTIT
FGNKIDEFLA

 

Blast result :
Comments
ISCbo4 is 85% aa similar to ISCpe3.
References
1] Hanna Skarin (2011) Direct submission
2] ISfinder annotation (2011)
3] Skarin,H., Hafstrom,T., Westerberg,J. and Segerman,B.(2011) BMC Genomics 12 (1), 185