ISPfe2
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HQ384169 | Y | Paracoccus ferrooxidans | Paracoccus ferrooxidans NCCB100066 |
DNA section
IS Length : 1884 bp
Ends
IR Length : 13
IRL : CCGAAGTTCGACAAAATTGGTCTATGTTTGAGGGGTGTCGGTCCGTCTGA
IRR : CCGAAGTTCGACAGCAAAACCGCTAAGCGATTGATTTCTCTGAGGCGGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTCGCTGTC | TTTAAA | GACGCGGCCA | 6 |
DNA sequence
CCGAAGTTCGACAAAATTGGTCTATGTTTGAGGGGTGTCGGTCCGTCTGATCGAGTCATCTCAATGGGTTAGTGATATCTAAGGGTCAAAGTTCTGTAGT
CACACGTCGACAGCTGTTTTGGTTTGCCTGGATGGTTCAACTGCAATATTCTGTAGGTATGTTTGTTCGGATCAGCAAAAGCGGTGAACGGCGCTACCTG
CAGCTCGTCGAGTCCTATCGGAACGAGGCGGGGCAACCGCGCCATCGGGTTGTTGCCAACCTTGGCCGCATCGACGGGATGCAGGATGGCCATCTCGACC
CGTTGATCCGCGGCCTTTGCCGCGTGGCCGGGCGCGACGAACCAGAAGCACCAGAGATCTCTCACGCACCTGCCAAAGCATTTGGAGACGTTTTCGCGCT
GCACGAACTATGGAGGGATCTCGGCTTTGACCGCGCCCTCGGCCGCGCTCTTCGATCCGGCAAGCGCAAGCTGGATGTCGAGGCGTTGGTGCGGGCGATG
GTCTTCAACCGCCTGTGCGACCCTTCCAGCAAGCTGGGGTGCCTGCGCTGGCTCGACACCGTGGCCATGCCCGAGATGCCGGCCAAGGTCGAGCATCACC
ATCTCCTGCGCGCCATGGACGCCCTGATGGACAATGTTGATCGCGTAGAGGCTGAGCTGGCCCGTCAGATCCGGCCCTTGGTCGATCGCGATCTGACGGT
TGTCTTCTACGACCTGACCACCGTGCGCATCCACGGTGAAGGAGAGGTCGAGGACGACATCCGCGCCTTTGGCATGAACAAGGAGACCGGTGGGATCGCC
CGCCAGTTCGTGCTTGGCGTCGTGCAGACCGCCGAGGGGCTGCCGCTCATGCATACCGTGCATCCGGGCAACGTGGCCGAGACCAAGACGCTGCAAGCCA
TGCTGACCACCGTCCTGCAGCGCTTCCCGATCGAGCGCGTGATCCTGGTGGCCGACCGCGGGCTGCTTAGCCTCGACAATATTGGCGCCCTGACATCTCT
GGCCGAACAGGGCGGGCGAACGTTGGAGTTCATCCTCGCCGTCCCCGCGCGCCGCTACAGCGACCTGGTCGAGACCTTCCGAGACATGGCCTTTGACGAG
AACGGGCTGACCGAGGATCGTTTTGCTGGTCACCGCCTGATCGTTGCCCATGATCCCTTCCGCGCCGCCGAGCAGGCCGGCCGCCGCCGGGCACGCATCG
CCGAGCTGGAGGCCATGGCCGAGAAGATGGTCGGCAAGCTTGATGCCCAGGATGCGGGAAAGACCGCAAAGGGGCGCCGTGCTTCCGACCGCGGGGCCTA
CAGCCGCTTCACCCGAGCCGTCGCAGAGGCAGAACTCACGCGCTTCCTCAAGGCCGATCTCGACGCAGATCGCTTCAGCTGGCACGTCGATGAAGACGCC
ATTGCTGAGGCGGAACTCTTCGACGGCAAGCTCGCGCTGATCACCAACGCCCCGGACCTGCCCCCTGCCGAGGCCGTCGCCCGCTACAAGGGCCTTGCCG
ACATCGAGCGGGGCTTCCGCGTGCTCAAATCTGACATCGAGATCGCGCCAGTCCACCATCGGCTGCCCGAGCGCATCCGCGCGCACGCGCTGATCTGCTT
CCTGGCCCTCGTTCTCTACCGCGTCATGCGCATGCGCCTGAAAGCCAGGGGGCACAGCGCAAGCCCCAGAACCGCGCTCGACATGCTCGCGCGCATACAG
CGCCACAGCACGAAAATCGGCGAACGCTCAATTGATGGCCTCTCAACGACAACCCCGGAACAATTGGAGCTGTTCAACACCCTGAACCTGCCAAAACCTG
CCTAAGAGCCGTCCCGTAGTCACACAAAGGCGAAATCCGCCTCAGAGAAATCAATCGCTTAGCGGTTTTGCTGTCGAACTTCGG
CACACGTCGACAGCTGTTTTGGTTTGCCTGGATGGTTCAACTGCAATATTCTGTAGGTATGTTTGTTCGGATCAGCAAAAGCGGTGAACGGCGCTACCTG
CAGCTCGTCGAGTCCTATCGGAACGAGGCGGGGCAACCGCGCCATCGGGTTGTTGCCAACCTTGGCCGCATCGACGGGATGCAGGATGGCCATCTCGACC
CGTTGATCCGCGGCCTTTGCCGCGTGGCCGGGCGCGACGAACCAGAAGCACCAGAGATCTCTCACGCACCTGCCAAAGCATTTGGAGACGTTTTCGCGCT
GCACGAACTATGGAGGGATCTCGGCTTTGACCGCGCCCTCGGCCGCGCTCTTCGATCCGGCAAGCGCAAGCTGGATGTCGAGGCGTTGGTGCGGGCGATG
GTCTTCAACCGCCTGTGCGACCCTTCCAGCAAGCTGGGGTGCCTGCGCTGGCTCGACACCGTGGCCATGCCCGAGATGCCGGCCAAGGTCGAGCATCACC
ATCTCCTGCGCGCCATGGACGCCCTGATGGACAATGTTGATCGCGTAGAGGCTGAGCTGGCCCGTCAGATCCGGCCCTTGGTCGATCGCGATCTGACGGT
TGTCTTCTACGACCTGACCACCGTGCGCATCCACGGTGAAGGAGAGGTCGAGGACGACATCCGCGCCTTTGGCATGAACAAGGAGACCGGTGGGATCGCC
CGCCAGTTCGTGCTTGGCGTCGTGCAGACCGCCGAGGGGCTGCCGCTCATGCATACCGTGCATCCGGGCAACGTGGCCGAGACCAAGACGCTGCAAGCCA
TGCTGACCACCGTCCTGCAGCGCTTCCCGATCGAGCGCGTGATCCTGGTGGCCGACCGCGGGCTGCTTAGCCTCGACAATATTGGCGCCCTGACATCTCT
GGCCGAACAGGGCGGGCGAACGTTGGAGTTCATCCTCGCCGTCCCCGCGCGCCGCTACAGCGACCTGGTCGAGACCTTCCGAGACATGGCCTTTGACGAG
AACGGGCTGACCGAGGATCGTTTTGCTGGTCACCGCCTGATCGTTGCCCATGATCCCTTCCGCGCCGCCGAGCAGGCCGGCCGCCGCCGGGCACGCATCG
CCGAGCTGGAGGCCATGGCCGAGAAGATGGTCGGCAAGCTTGATGCCCAGGATGCGGGAAAGACCGCAAAGGGGCGCCGTGCTTCCGACCGCGGGGCCTA
CAGCCGCTTCACCCGAGCCGTCGCAGAGGCAGAACTCACGCGCTTCCTCAAGGCCGATCTCGACGCAGATCGCTTCAGCTGGCACGTCGATGAAGACGCC
ATTGCTGAGGCGGAACTCTTCGACGGCAAGCTCGCGCTGATCACCAACGCCCCGGACCTGCCCCCTGCCGAGGCCGTCGCCCGCTACAAGGGCCTTGCCG
ACATCGAGCGGGGCTTCCGCGTGCTCAAATCTGACATCGAGATCGCGCCAGTCCACCATCGGCTGCCCGAGCGCATCCGCGCGCACGCGCTGATCTGCTT
CCTGGCCCTCGTTCTCTACCGCGTCATGCGCATGCGCCTGAAAGCCAGGGGGCACAGCGCAAGCCCCAGAACCGCGCTCGACATGCTCGCGCGCATACAG
CGCCACAGCACGAAAATCGGCGAACGCTCAATTGATGGCCTCTCAACGACAACCCCGGAACAATTGGAGCTGTTCAACACCCTGAACCTGCCAAAACCTG
CCTAAGAGCCGTCCCGTAGTCACACAAAGGCGAAATCCGCCTCAGAGAAATCAATCGCTTAGCGGTTTTGCTGTCGAACTTCGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1674 bp | 557 aa | 132 | 1805 | + | No |
Chemistry : DDE
ORF sequence :
MVQLQYSVGMFVRISKSGERRYLQLVESYRNEAGQPRHRVVANLGRIDGMQDGHLDPLIRGLCRVAGRDEPEAPEISHAPAKAFGDVFALHELWRDLGFD
RALGRALRSGKRKLDVEALVRAMVFNRLCDPSSKLGCLRWLDTVAMPEMPAKVEHHHLLRAMDALMDNVDRVEAELARQIRPLVDRDLTVVFYDLTTVRI
HGEGEVEDDIRAFGMNKETGGIARQFVLGVVQTAEGLPLMHTVHPGNVAETKTLQAMLTTVLQRFPIERVILVADRGLLSLDNIGALTSLAEQGGRTLEF
ILAVPARRYSDLVETFRDMAFDENGLTEDRFAGHRLIVAHDPFRAAEQAGRRRARIAELEAMAEKMVGKLDAQDAGKTAKGRRASDRGAYSRFTRAVAEA
ELTRFLKADLDADRFSWHVDEDAIAEAELFDGKLALITNAPDLPPAEAVARYKGLADIERGFRVLKSDIEIAPVHHRLPERIRAHALICFLALVLYRVMR
MRLKARGHSASPRTALDMLARIQRHSTKIGERSIDGLSTTTPEQLELFNTLNLPKPA
RALGRALRSGKRKLDVEALVRAMVFNRLCDPSSKLGCLRWLDTVAMPEMPAKVEHHHLLRAMDALMDNVDRVEAELARQIRPLVDRDLTVVFYDLTTVRI
HGEGEVEDDIRAFGMNKETGGIARQFVLGVVQTAEGLPLMHTVHPGNVAETKTLQAMLTTVLQRFPIERVILVADRGLLSLDNIGALTSLAEQGGRTLEF
ILAVPARRYSDLVETFRDMAFDENGLTEDRFAGHRLIVAHDPFRAAEQAGRRRARIAELEAMAEKMVGKLDAQDAGKTAKGRRASDRGAYSRFTRAVAEA
ELTRFLKADLDADRFSWHVDEDAIAEAELFDGKLALITNAPDLPPAEAVARYKGLADIERGFRVLKSDIEIAPVHHRLPERIRAHALICFLALVLYRVMR
MRLKARGHSASPRTALDMLARIQRHSTKIGERSIDGLSTTTPEQLELFNTLNLPKPA
Blast result :
Comments
ISPfe2 has been identified by its transposition into entrapment vector pMAT1. ISPfe2 is 67 % aa similar to ISThsp7.
References
1] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277