ISPfe2

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HQ384169 Y Paracoccus ferrooxidans
Paracoccus ferrooxidans NCCB100066
DNA section
IS Length : 1884 bp

Ends


IR Length : 13

IRL : CCGAAGTTCGACAAAATTGGTCTATGTTTGAGGGGTGTCGGTCCGTCTGA
IRR : CCGAAGTTCGACAGCAAAACCGCTAAGCGATTGATTTCTCTGAGGCGGAT

Insertion site


Left flankDirect repeatRight flankDR Length
TGTCGCTGTCTTTAAAGACGCGGCCA6

DNA sequence

CCGAAGTTCGACAAAATTGGTCTATGTTTGAGGGGTGTCGGTCCGTCTGATCGAGTCATCTCAATGGGTTAGTGATATCTAAGGGTCAAAGTTCTGTAGT
CACACGTCGACAGCTGTTTTGGTTTGCCTGGATGGTTCAACTGCAATATTCTGTAGGTATGTTTGTTCGGATCAGCAAAAGCGGTGAACGGCGCTACCTG
CAGCTCGTCGAGTCCTATCGGAACGAGGCGGGGCAACCGCGCCATCGGGTTGTTGCCAACCTTGGCCGCATCGACGGGATGCAGGATGGCCATCTCGACC
CGTTGATCCGCGGCCTTTGCCGCGTGGCCGGGCGCGACGAACCAGAAGCACCAGAGATCTCTCACGCACCTGCCAAAGCATTTGGAGACGTTTTCGCGCT
GCACGAACTATGGAGGGATCTCGGCTTTGACCGCGCCCTCGGCCGCGCTCTTCGATCCGGCAAGCGCAAGCTGGATGTCGAGGCGTTGGTGCGGGCGATG
GTCTTCAACCGCCTGTGCGACCCTTCCAGCAAGCTGGGGTGCCTGCGCTGGCTCGACACCGTGGCCATGCCCGAGATGCCGGCCAAGGTCGAGCATCACC
ATCTCCTGCGCGCCATGGACGCCCTGATGGACAATGTTGATCGCGTAGAGGCTGAGCTGGCCCGTCAGATCCGGCCCTTGGTCGATCGCGATCTGACGGT
TGTCTTCTACGACCTGACCACCGTGCGCATCCACGGTGAAGGAGAGGTCGAGGACGACATCCGCGCCTTTGGCATGAACAAGGAGACCGGTGGGATCGCC
CGCCAGTTCGTGCTTGGCGTCGTGCAGACCGCCGAGGGGCTGCCGCTCATGCATACCGTGCATCCGGGCAACGTGGCCGAGACCAAGACGCTGCAAGCCA
TGCTGACCACCGTCCTGCAGCGCTTCCCGATCGAGCGCGTGATCCTGGTGGCCGACCGCGGGCTGCTTAGCCTCGACAATATTGGCGCCCTGACATCTCT
GGCCGAACAGGGCGGGCGAACGTTGGAGTTCATCCTCGCCGTCCCCGCGCGCCGCTACAGCGACCTGGTCGAGACCTTCCGAGACATGGCCTTTGACGAG
AACGGGCTGACCGAGGATCGTTTTGCTGGTCACCGCCTGATCGTTGCCCATGATCCCTTCCGCGCCGCCGAGCAGGCCGGCCGCCGCCGGGCACGCATCG
CCGAGCTGGAGGCCATGGCCGAGAAGATGGTCGGCAAGCTTGATGCCCAGGATGCGGGAAAGACCGCAAAGGGGCGCCGTGCTTCCGACCGCGGGGCCTA
CAGCCGCTTCACCCGAGCCGTCGCAGAGGCAGAACTCACGCGCTTCCTCAAGGCCGATCTCGACGCAGATCGCTTCAGCTGGCACGTCGATGAAGACGCC
ATTGCTGAGGCGGAACTCTTCGACGGCAAGCTCGCGCTGATCACCAACGCCCCGGACCTGCCCCCTGCCGAGGCCGTCGCCCGCTACAAGGGCCTTGCCG
ACATCGAGCGGGGCTTCCGCGTGCTCAAATCTGACATCGAGATCGCGCCAGTCCACCATCGGCTGCCCGAGCGCATCCGCGCGCACGCGCTGATCTGCTT
CCTGGCCCTCGTTCTCTACCGCGTCATGCGCATGCGCCTGAAAGCCAGGGGGCACAGCGCAAGCCCCAGAACCGCGCTCGACATGCTCGCGCGCATACAG
CGCCACAGCACGAAAATCGGCGAACGCTCAATTGATGGCCTCTCAACGACAACCCCGGAACAATTGGAGCTGTTCAACACCCTGAACCTGCCAAAACCTG
CCTAAGAGCCGTCCCGTAGTCACACAAAGGCGAAATCCGCCTCAGAGAAATCAATCGCTTAGCGGTTTTGCTGTCGAACTTCGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1674 bp557 aa1321805+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVQLQYSVGMFVRISKSGERRYLQLVESYRNEAGQPRHRVVANLGRIDGMQDGHLDPLIRGLCRVAGRDEPEAPEISHAPAKAFGDVFALHELWRDLGFD
RALGRALRSGKRKLDVEALVRAMVFNRLCDPSSKLGCLRWLDTVAMPEMPAKVEHHHLLRAMDALMDNVDRVEAELARQIRPLVDRDLTVVFYDLTTVRI
HGEGEVEDDIRAFGMNKETGGIARQFVLGVVQTAEGLPLMHTVHPGNVAETKTLQAMLTTVLQRFPIERVILVADRGLLSLDNIGALTSLAEQGGRTLEF
ILAVPARRYSDLVETFRDMAFDENGLTEDRFAGHRLIVAHDPFRAAEQAGRRRARIAELEAMAEKMVGKLDAQDAGKTAKGRRASDRGAYSRFTRAVAEA
ELTRFLKADLDADRFSWHVDEDAIAEAELFDGKLALITNAPDLPPAEAVARYKGLADIERGFRVLKSDIEIAPVHHRLPERIRAHALICFLALVLYRVMR
MRLKARGHSASPRTALDMLARIQRHSTKIGERSIDGLSTTTPEQLELFNTLNLPKPA

 

Blast result :
Comments
ISPfe2 has been identified by its transposition into entrapment vector pMAT1. ISPfe2 is 67 % aa similar to ISThsp7.
References
1] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277