ISAtsp9

  • Family ISNCY
  • Group ISMae2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrospira sp.
Arthrospira sp.
DNA section
IS Length : 1421 bp

Ends


IR Length : 17/18

IRL : CAGCAATTCTCATTTTGGCGAAAACCTGTTCAAGTCCCCAGCATCCCTGT
IRR : CAGCAATTCTCATTTGGGAAATTCAACTGCTATCGGGTGGGATGTCTAAC

Insertion site


Left flankDirect repeatRight flankDR Length
CAAAATTGGGTTCTGACGCA0
AGCCGAGGATGGCTTTTTGTTGAAAGTTATT9
TTGATCAAAGGATAATTAATTACCAAACTTG9

DNA sequence

CAGCAATTCTCATTTTGGCGAAAACCTGTTCAAGTCCCCAGCATCCCTGTATCGTAATGACATCTAAGAAACCCAGGAGGGCCAGAGCCGTTGAAAAAGC
CAGGTTGCTTTGAGACTCTAGTCGGTTCTTTCCGCCAGTGCTTGTCATCGCTACCGGACAAGCGCCGGGGTAAAAATCGCCGCTATGGAATGGAGGATGC
CGCTTTAAGTGCGTGAGCGTGTGTTTTTTACTCAAACTCCGTCGTTTCTGGCTTATCAACGTCTGATGGAGGGGAGTAAAGGCAAGAGCAATGCCCAAAG
TCTGTTTGGAGTTCATCGAATTCCCTGTGATCACCAGATTCGGGACTTATTAGATGCCGTGTCCCCAGAGCACCTGTTTCCAGTGTTTGAGGAGATCCTA
CAAGTCTTGGAAGCCCAGGGGCAGTTAGAAGACTTCCGTTGCCTAGGGGACAGTCTATTAGTCGCGTTGGATGGCACGGAATACTTCAGTTCCGACAAAA
TTCACTGTCCCCACTGTTCAACGCGCACCCAGAAGTCAGGAAAAACCCATTACTTCCATAGTGTTGTCACTCCAGTCATCGTCTGTCCGGGACAGAATCA
TGTGATTCCCTTAGTCCCCGAATTTATCGTGCCCCAAGATGGTCATGATAAGCAAGACTGTGAGAATGCCGCCGCCAAACGCTGGCTATCGAGGCAAGAA
CAATGCTTGAGGGCTTTGAATGTCAAGGTTTTAGGGGATGACCTCTATTGCCACCAACCGTTGTGTCAGCAGTTTTTAGAGCAGCAACTTAACTTCATCG
TCGTCTGTCGCCCCGAGTCTCATACTACCCTCTATGAACACCTAGAGGGCATCGAACTCCCGACCCTCACGACCAAGAAGTGGACTGGTCAAGTCGAGAA
AACCTATACCTACCGCTATCTCAACGGAGTCCCCCTCAAAGATAGCGATGAGGCCCTGTTGGTTAACTGGTGCGAACTTACTGTCACCACCGCTGATGGC
CAGGTAACCTATCACAACTCCTTTGCCACGAATTATCCTCTCAGCGATGAGAATGTAGCCGAGGTGGTTCGGGCCGGGCTGACTCGTTGGAAAGTTGAGA
ATGAGAACAACAACACTCTCAAGACCAAGGGCTACCATCTCGAACACAATTTTGGCCATGGCAAGCAGCATCTTTCTTCCTTGCTGGCGACCCTCAACAT
CCTCTCGCTGCTCTTCCACACCCTGCTGGAGTTGCTCGATAACAAGTACCAGTTGCTACGAGCGCACTTACCTACCCGCCAAACCTTCTTTAATGATTTG
CGCGCGCTTACCCAGACTGTACGCTGAGACAGTTGGGACCACCTTCTGACCTTTATGCTTGAGGGTCTCGAGTTAGACATCCCACCCGATAGCAGTTGAA
TTTCCCAAATGAGAATTGCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1210 bp403 aa1181327+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

LVGSFRQCLSSLPDKRRGKNRRYGMEDAALSVRERVFFTQTPSFLAYQRLMEGSKGKSNAQSLFGVHRIPCDHQIRDLLDAVSPEHLFPVFEEILQVLEA
QGQLEDFRCLGDSLLVALDGTEYFSSDKIHCPHCSTRTQKSGKTHYFHSVVTPVIVCPGQNHVIPLVPEFIVPQDGHDKQDCENAAAKRWLSRQEQCLRA
LNVKVLGDDLYCHQPLCQQFLEQQLNFIVVCRPESHTTLYEHLEGIELPTLTTKKWTGQVEKTYTYRYLNGVPLKDSDEALLVNWCELTVTTADGQVTYH
NSFATNYPLSDENVAEVVRAGLTRWKVENENNNTLKTKGYHLEHNFGHGKQHLSSLLATLNILSLLFHTLLELLDNKYQLLRAHLPTRQTFFNDLRALTQ
TVR

 

Blast result :
Comments
ISAtsp9 is 68% aa similar to ISMae2.
There is a non-programmed frameshift at position 210. The transposase is reconstructed in silico.
References
1] ISfinder annotation (2009)