ISAtsp3

  • Family IS4
  • Group IS10
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrospira sp.
Arthrospira sp. PCC 8005
DNA section
IS Length : 1236 bp

Ends


IR Length : 16/17

IRL : CTCAGTACAGGACAAAAAAGCTGAAAGTCTTAGCCAAAAGGGAATCTAGC
IRR : CTAAGTACAGGACAAAAGTTGTAGAGCCTGGTGAAACCGCCCTGAAAACA

Insertion site


Left flankDirect repeatRight flankDR Length
AACCGTATGTGAGACTTTCACCTCATACG9
TGTTGTTTAAGGCTATTGTA0
GACAATTTATAATTGATAATTATAGCATT9
GACGATACAACGTTGAGTCATATTCTGAT9
CTGTGTAGGTAGTCGCAAGGACCCCCAAC9
GCTACCAGCTTTGCTGGTTAAGTTGACGT9
AAAAGTAGGAGGCTCGGTCTACTACCTAC9
AAGAGTTGTTGATGACACCATGCGACTAT9
GCTGTTTTATGTTGTTTAATTACACCTTT9

DNA sequence

CTCAGTACAGGACAAAAAAGCTGAAAGTCTTAGCCAAAAGGGAATCTAGCCGAAAATTCTGAAGGGGGCGCTCCGGGCCGAGGTGAAAGTCGAGGGGTGG
GGGGGTAGCGCCAAGTTGGGGTGAGAGGGTTACATCGGAATTACCACAAACCAAACTTCCCTCTCATGAACGAGCTTAACCGATTACGAGACACTTTGCG
CCCTCACTTGCCCTGGCACGGGGCGAGATTAAACTTTGTCTGTCTGTTCCTGATGGCGCTATTCCAAACAAAGACGGTTAATCTGATGGAAATAGCGACT
GTATTCGCAAATCCTGTGCAAATTTCCTCAAATTACCAGCGATTACAACGTTTTTTTCGGCAATTCAAATTTGACCGGGCAGAGATTGCCCGTTTCGTCG
TTAGCCTCATTGACATTCCCCAACCTTGGACTCTTAGTCTCGACCGCACCTGTTGGTCTTTCGGTCAAACCCATTTCAACATCTTGATGTTGGCAGTCGT
CCACGAGGGGATTGCCTTTCCCCTGCTGTGGACGATGCTTGACAAAAAGGGCAATAGCAACAGTGGCGAACGCATGGACTTATTCGACCGCTTCGAGGCA
CTATTTCCTGACGTGGAGGTGGCTTGTCTGACCGCTGACCGGGAATTTGTGGGGCGAGATTGGCTCTCGTATCTTCTCATCGACCCCGAGGTTCCTTTCC
GCCTACGCATCCGCCACAGCGAGCTGATTAGTCCTAAGTTAGGAGGAACTCGGCGTAGTGGCGAACGAATGTTTGATTCTCTGCGACCCGGAGAATTTCG
CCAGCTTTCGGGTCGCCGTTGGGTTTGGGGACGGCAGGTTTACGTCATTGGCTCTCGTCTGGCTGATTCGGGGGAGTTGTTGATTCTCATCACTAACGCT
TGCCCCGAAACGGCCCTCCCCGACTATGCTCGGCGTTGGGGTATTGAAAACCTCTTCGGAGCCTTGAAGACTCGGGGCTTCTGTCTCGAATCGACTCACT
TTAAGGACCCTGAGCGCTTGAGCCGTTTATTGGCTTTGCTTAGCCTGGCTTTTACTTGGGCTATGAAGGTGGGTTTGTGGATTCACCAAGGTTCACCCAT
TCCTTTGAAGGCTCACGGACGACGCTCCCAGAGTCTTTTCCGCACTGGCTTCGATTTTCTACGCCGCACTTTCTCTAATCTGCCTTTGTTTTCAGGGCGG
TTTCACCAGGCTCTACAACTTTTGTCCTGTACTTAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1071 bp356 aa1661236+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNELNRLRDTLRPHLPWHGARLNFVCLFLMALFQTKTVNLMEIATVFANPVQISSNYQRLQRFFRQFKFDRAEIARFVVSLIDIPQPWTLSLDRTCWSFG
QTHFNILMLAVVHEGIAFPLLWTMLDKKGNSNSGERMDLFDRFEALFPDVEVACLTADREFVGRDWLSYLLIDPEVPFRLRIRHSELISPKLGGTRRSGE
RMFDSLRPGEFRQLSGRRWVWGRQVYVIGSRLADSGELLILITNACPETALPDYARRWGIENLFGALKTRGFCLESTHFKDPERLSRLLALLSLAFTWAM
KVGLWIHQGSPIPLKAHGRRSQSLFRTGFDFLRRTFSNLPLFSGRFHQALQLLSCT

 

Blast result :
Comments
ISAtsp3 is 71% aa similar to ISSysp2.
References
1] Isfinder annotation (2009)
2] Nicolas Morin (2009) Direct submission