ISAtsp2

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrospira sp.
Arthrospira sp. PCC 8005
DNA section
IS Length : 1761 bp

Ends


IR Length : 27/30

IRL : CCTACATTCCGCAGGTTGACAGGGAATAAAAGATATGGTGCTAGTCTAGG
IRR : CCTACATTCCGCAGGTTGATAGGTAATTAACCGGATGCGTAGTAATAGCG

Insertion site


Left flankDirect repeatRight flankDR Length
TGAAGCTGGCATGAATAGTCAAGAC5
GACAGTGGCGGTGTAATAATTGAAGG6
AAGATTTCCGTTTTTAAAAACCTCCAC7
TTTCCAAATGGTTAAAACCTGTTGG5
ACCTGAAAGGATGGAAGACTAAGGGG6
ATATAAACGGAACGTTTTAAATCTAAAGATGGAATGCCCA0
AAATGGAACGTTTAAACTCCTATTAG6
AATGCTCTGCCTATAACTATAAACAA6

DNA sequence

CCTACATTCCGCAGGTTGACAGGGAATAAAAGATATGGTGCTAGTCTAGGCTAGAAAGGGTTCCTTCGAGCGGTAGGCTCTGGCGATGCAGATTAAAAAT
TTAGACCATCTGGGTTTAGTGGCTGGAGTGATTGACGAACTTGGCCTGGTCGAGTTGACGGATAAGCGGATTGAACCTCATAGCTTGGAGCATGTGAGTG
CCGGACAAGTGGTTAAAGCCATGATTTTGAACGCCCTAGGCTTTCTCAGTGCACCGTTGTATTTATTCAGCGAGTTTTTTGAGAGTAAAGCGGTGTCTCA
TCTGCTCGGGGAAGGGGTAGAGGCTCGTCACTTGAATGACGACCGCTTAGGTCGAGTGTTGGATGAACTCTACGCAGAAGGGACGACATCATTTTTTCTC
CAGGTGGCGCTCCAGGCTGTGGAACGATTTGGAATTGATATTCAACAGCGTCATCTCGATGCCACCTCGATCTCAGTAGAAGGGAAGTATCAGCGGTGCT
CGAAGGGGAAATCCGAGGTAGGACTTGAGTCAGCTCCCCCCGGTGAGACATCAGCAGAACCCAGCCCAATTCGGCTGTGTCGAGGCTATTCCCGAGACCA
TCGTCCAGATTTGAAACAGTTTTTGATGACTCTAGTCTGTGCCGCCGACGGTGGCGTGCCGCTATGGTTGCAGTTGGCCAGTGGCAATGAACAGGACACT
CAGCAGTTTGCAGAGGTGCTCAAGGCGTTTGGTGACCAATGGACTAGCGACGGTATCGTTGTGATGGATGCCGCCTTTTACACAGCAGCCAATCTGCAGC
AGATGGAGACCACGGGGTGGCTATCACGGGTGCCGCTGACCCTAAAAGCGGCTCAAGAGCTGGTGCACAGCGATGTCACCCGACTGACTGAAGTCCCCTG
CAACTCCAAGGATTACCGGATGTGGGAGATTGAGCAGACCTATGCCGGAGTGCGCCAGCGCTGGCGCCTCGTCGAAAGCCAAACCCGCAAAGCCAATGCC
GACCTCTGGCAACCCGAATTAGAGAAGCTCGAACACCGCCTCAACCGCCAATTGAAAAAGCTGACCCAGCGGGTCTTTGCTTGCAAACCCGATGCCCTCG
AGGCCTTGATGCAGTTTCAAGATGGACTCGAGGTGCATCAGCTCACTCAGGTCTCCCTGGAGACGGTGCGGGCCAAGCGACCCCCCGGTCGTCCCGCCAA
ATCCGCCGAACCCACCCCAGTTCAGGGCTATCGGCTCCAGGCCACGTTACAGCAGACCGCCACGGCGGAAGACCGCTTTAGCCGTCAGCGTAGTCGCTTT
ATTCTAGCCACCAATCAACTGGAGCAATCCCTCTGGCCGGCTCAGACCTGCTTGAGCGAATATAAAGGGCAACAGACCGTCGAGAGAGGCTTTCGCTTCC
TCCAAGACCCCCTCTTCTTTGCCAGTAGCGTCTTTGTCAAAAAGCCGCAGCGGGTCGAGGCCTTAGCTCTCATCATGGCCCTAACCCTTATGGTGTATAC
CCTCGCCGAACGCCAACTGCGACAGGCGCTAGATGCTCAGAAGCAAACGGTGCGCGACCAACGCCAACAACCCACCGCTAAACCGACCTTTCGCTGGATT
ATGCAGAAGTTTCAAGGAATCCACTGGGTTAATCTCGATGGGCAAAGGCAGATTAGCAATCTCAATGATGAACGGCGATTGATTATTCACCTCTTCGGTC
CACCCGTTGAGCGCTATTACTACGCATCCGGTTAATTACCTATCAACCTGCGGAATGTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1650 bp549 aa861735+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQIKNLDHLGLVAGVIDELGLVELTDKRIEPHSLEHVSAGQVVKAMILNALGFLSAPLYLFSEFFESKAVSHLLGEGVEARHLNDDRLGRVLDELYAEGT
TSFFLQVALQAVERFGIDIQQRHLDATSISVEGKYQRCSKGKSEVGLESAPPGETSAEPSPIRLCRGYSRDHRPDLKQFLMTLVCAADGGVPLWLQLASG
NEQDTQQFAEVLKAFGDQWTSDGIVVMDAAFYTAANLQQMETTGWLSRVPLTLKAAQELVHSDVTRLTEVPCNSKDYRMWEIEQTYAGVRQRWRLVESQT
RKANADLWQPELEKLEHRLNRQLKKLTQRVFACKPDALEALMQFQDGLEVHQLTQVSLETVRAKRPPGRPAKSAEPTPVQGYRLQATLQQTATAEDRFSR
QRSRFILATNQLEQSLWPAQTCLSEYKGQQTVERGFRFLQDPLFFASSVFVKKPQRVEALALIMALTLMVYTLAERQLRQALDAQKQTVRDQRQQPTAKP
TFRWIMQKFQGIHWVNLDGQRQISNLNDERRLIIHLFGPPVERYYYASG

 

Blast result :
Comments
ISAtsp2 is 62% aa similar to ISAva4.
References
1] ISfinder annotation (2009)
2] Morin Nicolas (2009) Direct submission