ISAzs35
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013855 | ND | Azospirillum sp. | Azospirillum sp. B510 plasmid pAB510f Azospirillum sp. B510 plasmid pAB510a Azospirillum sp. B510 |
DNA section
IS Length : 1524 bp
Ends
IR Length : 10/11
IRL : atcctATGAGGTGAAGAGCGACTGGAACCGGGTCAGAGTTCTGGTCCAGC
IRR : --tatATGAGGAGAATCAACGGAAATGTTCGTCAGCTTTTCATTTTATGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGGGGTCGAG | AGCCGATCTG | 0 |
DNA sequence
ATCCTATGAGGTGAAGAGCGACTGGAACCGGGTCAGAGTTCTGGTCCAGCACTGAACCCGGAGGCCGTCATGTCCAGCACATCCAATTCCACCGCCATTC
GTGTCGATCTCGGCGCGATCTTCGTTTCGCTTGAGCTGAGCCAGTCGAAATGGCTGGTCACATCACTGACGCCGGGTGGTGGCGAGAAGATGTCGAAACA
TCTGGTCAAGGCAGGGGATATTGGTGACCTGCTTTTGCGATTTGCGGAATTACGACGCAAGGCTCTGGTTCGGACTGGGCAAATCTTTCCAATTGTTGTG
ATCCAGGAAGCAGGGTTGGACGGCTTCTGGATTCATCGGGTCCTACTCCAGGAAGGGATCGAAAGTCACGTTGTCGACCCGGCATCGGTAGCGATTTCGC
GCCGCCGTCGTCGGGCAAAGACCGACAGGATTGACGGCGAGGCGCTCGTCCGAACGTTGCTGGCCTACAAGCGGGGCGAGCCTCGCGTTTGTGCAATGGT
AAGGCCGCCAACGCCTGAAGAGGAAGACCGGCGGCGGATCGCGCGGGAACGCAAGGTACTGGTCAATGAACGGGTAGCGCACGTCAATCGGATCAAGGGG
CTGCTCTACAGTCATGGCGTCGGAGCTTATGAACCGCTGCGGCGCGATCGCCGGGAGCGGCTTGATGAGCTCCGTACCGGAGATGGCCGCCCATTGCCAC
CCCACCTGCAGGCGCAGATTTCGCGGGAGCTTGACCGCCTTGAACTGGTGCTTGCACAGATAAAGGACATCGAGCGGGCGAGTACCGACATGCTTACCGC
AGAGGCGCTCGCATTTCCCGGCGCCGCTCTGTTGCTGGGCCTGAAAGGGATTGGAGCGGCGGCCGCGGCCGTGTTGTGGGGCGAAGGGCTTTGCCGGCAT
TTCGACAACCGCAGACAGGTCGCCGCCTACGCGGGCCTCGCGCCGACACCCTGGCAGAGTGGCCAGGTGGATCACGAGCAGGGAGTTTCAAAATCAGGTA
ATCCACGTCTGCGCACGACGTTGATCCAGATCGCCTGGCTGTGGAACCGCCACCAGCCGGATTCCGCACTGACGCTTTGGTCTAAGGATCAGGTGGCTAG
GAATGGGGGACGGCTCAAGAAGACGATGATCGTCGCCGTTGCCCGAAAACTGTTCGTCGCGCTTTGGAAATATACCCGTGCGGGCGTCGTCATTGAAGGT
GCCGTGCTGAAGGCCGCCTGACGTTCCGAGCGCTCATCAATTTCTCCGGGGAAAACCTTCCCGCTGGAGCCCGTACGGGCGAACCGAAGATCGGCATGGC
TGTCAAACAGCCGCGGTTTGAGAATGGTCTCGCCCAATTGAGCCTTGCCCGCCGCATGCGGGATGTTGGTGCAGTCGCCCCAGTCGACTGACCGTATATA
AGTTGGATCAGGCCCGGTTTCCGGGCCGCGTCATTGAAGCAGGCTCACGCCGTGGATACCAGATAGCGCTACAGGAGCATAAAATGAAAAGCTGACGAAC
ATTTCCGTTGATTCTCCTCATATA
GTGTCGATCTCGGCGCGATCTTCGTTTCGCTTGAGCTGAGCCAGTCGAAATGGCTGGTCACATCACTGACGCCGGGTGGTGGCGAGAAGATGTCGAAACA
TCTGGTCAAGGCAGGGGATATTGGTGACCTGCTTTTGCGATTTGCGGAATTACGACGCAAGGCTCTGGTTCGGACTGGGCAAATCTTTCCAATTGTTGTG
ATCCAGGAAGCAGGGTTGGACGGCTTCTGGATTCATCGGGTCCTACTCCAGGAAGGGATCGAAAGTCACGTTGTCGACCCGGCATCGGTAGCGATTTCGC
GCCGCCGTCGTCGGGCAAAGACCGACAGGATTGACGGCGAGGCGCTCGTCCGAACGTTGCTGGCCTACAAGCGGGGCGAGCCTCGCGTTTGTGCAATGGT
AAGGCCGCCAACGCCTGAAGAGGAAGACCGGCGGCGGATCGCGCGGGAACGCAAGGTACTGGTCAATGAACGGGTAGCGCACGTCAATCGGATCAAGGGG
CTGCTCTACAGTCATGGCGTCGGAGCTTATGAACCGCTGCGGCGCGATCGCCGGGAGCGGCTTGATGAGCTCCGTACCGGAGATGGCCGCCCATTGCCAC
CCCACCTGCAGGCGCAGATTTCGCGGGAGCTTGACCGCCTTGAACTGGTGCTTGCACAGATAAAGGACATCGAGCGGGCGAGTACCGACATGCTTACCGC
AGAGGCGCTCGCATTTCCCGGCGCCGCTCTGTTGCTGGGCCTGAAAGGGATTGGAGCGGCGGCCGCGGCCGTGTTGTGGGGCGAAGGGCTTTGCCGGCAT
TTCGACAACCGCAGACAGGTCGCCGCCTACGCGGGCCTCGCGCCGACACCCTGGCAGAGTGGCCAGGTGGATCACGAGCAGGGAGTTTCAAAATCAGGTA
ATCCACGTCTGCGCACGACGTTGATCCAGATCGCCTGGCTGTGGAACCGCCACCAGCCGGATTCCGCACTGACGCTTTGGTCTAAGGATCAGGTGGCTAG
GAATGGGGGACGGCTCAAGAAGACGATGATCGTCGCCGTTGCCCGAAAACTGTTCGTCGCGCTTTGGAAATATACCCGTGCGGGCGTCGTCATTGAAGGT
GCCGTGCTGAAGGCCGCCTGACGTTCCGAGCGCTCATCAATTTCTCCGGGGAAAACCTTCCCGCTGGAGCCCGTACGGGCGAACCGAAGATCGGCATGGC
TGTCAAACAGCCGCGGTTTGAGAATGGTCTCGCCCAATTGAGCCTTGCCCGCCGCATGCGGGATGTTGGTGCAGTCGCCCCAGTCGACTGACCGTATATA
AGTTGGATCAGGCCCGGTTTCCGGGCCGCGTCATTGAAGCAGGCTCACGCCGTGGATACCAGATAGCGCTACAGGAGCATAAAATGAAAAGCTGACGAAC
ATTTCCGTTGATTCTCCTCATATA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1152 bp | 383 aa | 70 | 1221 | + | No |
Chemistry : DEDD
ORF sequence :
MSSTSNSTAIRVDLGAIFVSLELSQSKWLVTSLTPGGGEKMSKHLVKAGDIGDLLLRFAELRRKALVRTGQIFPIVVIQEAGLDGFWIHRVLLQEGIESH
VVDPASVAISRRRRRAKTDRIDGEALVRTLLAYKRGEPRVCAMVRPPTPEEEDRRRIARERKVLVNERVAHVNRIKGLLYSHGVGAYEPLRRDRRERLDE
LRTGDGRPLPPHLQAQISRELDRLELVLAQIKDIERASTDMLTAEALAFPGAALLLGLKGIGAAAAAVLWGEGLCRHFDNRRQVAAYAGLAPTPWQSGQV
DHEQGVSKSGNPRLRTTLIQIAWLWNRHQPDSALTLWSKDQVARNGGRLKKTMIVAVARKLFVALWKYTRAGVVIEGAVLKAA
VVDPASVAISRRRRRAKTDRIDGEALVRTLLAYKRGEPRVCAMVRPPTPEEEDRRRIARERKVLVNERVAHVNRIKGLLYSHGVGAYEPLRRDRRERLDE
LRTGDGRPLPPHLQAQISRELDRLELVLAQIKDIERASTDMLTAEALAFPGAALLLGLKGIGAAAAAVLWGEGLCRHFDNRRQVAAYAGLAPTPWQSGQV
DHEQGVSKSGNPRLRTTLIQIAWLWNRHQPDSALTLWSKDQVARNGGRLKKTMIVAVARKLFVALWKYTRAGVVIEGAVLKAA
Blast result :
Comments
ISAzs35 is 82% aa similar to ISRel19.
References
1] ISfinder annotation (2011)
2] Kaneko,T., Minamisawa,K., Isawa,T., Nakatsukasa,H., Mitsui,H., Kawaharada,Y., Nakamura,Y., Watanabe,A., Kawashima,K., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Sato,S. (2010) DNA Res. 17 (1), 37-50.
2] Kaneko,T., Minamisawa,K., Isawa,T., Nakatsukasa,H., Mitsui,H., Kawaharada,Y., Nakamura,Y., Watanabe,A., Kawashima,K., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Sato,S. (2010) DNA Res. 17 (1), 37-50.