ISAzba9

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Azospirillum brasilense
Azospirillum brasilense CBG497
DNA section
IS Length : 1847 bp

Ends


IR Length : 21

IRL : GGCTCTTGGAAGTTTTGTGTGATCAAGCAGGGGTTGAGCTCGCAACCCAA
IRR : GGCTCTTGGAAGTTTTGTGTGGATGAGTAAAAGGTGTTTGGGGATGTGAT

Insertion site


Left flankDirect repeatRight flankDR Length
CCCTGACGAGTACTTCGCCAGTTCGGGATGTCGTTT0

DNA sequence

GGCTCTTGGAAGTTTTGTGTGATCAAGCAGGGGTTGAGCTCGCAACCCAAAACAGTCGAAAGTAGGCGGAGCCCTTCGAAGTTCGCGGACCGCTATATGA
GAGGAAGTGCATCCTCGACATGGTCCTCTCCTTGAACCTTTCCCTGCATTCGATTGGCTTTCTTCCTGGTCTCCATATCATTGACCAGATCGACCATGGC
TCCCCACGCCTCACGTTGCGCGCGCAGCAAACGACGGTTTCGGCTCCCTGTACCGCGTGTGGGACGCCATCCCGGCGGATTCACGGTTCCTACTGGCGCA
GCCTCGGCGACCTCGCGTGTTTCGGCCGCCCCACTGTCCTGCTGGTCCGGGTCCGCCGTTTCCGTTGCACAGCACCGACCTGTTCCCGGCGGACCTTCGC
CGAATCACTGCCGGGCATTGCGCAATGGCGAAGCCGGCAGACCGATCGGCTGCGCTCGGTGCACCGGTCCATCGGCTTGGCGCTGGGCGGCAACCCCGGT
GCCCGTCATGCCGTGGCGATGGGAATGCCGATCAGCCGAACGACGCTGCTGCGTCGCGTTCGCGCCGGCGGAAACAAGCCGATCCCTCCGGTCACCGTGC
TGGGCGTGGACGATTGGGCTTGGCGCAAGGGGCATCGCTACGGCACCATTCTGTGCGATCTGGAGCGTCGGCGGGTCATCGACTTGTTGCCCGACCGCAG
CGCCGACACCTTGGCGGCATGGCTCATGACGCACCCCGGCATCTCCGTCGTCGCCCGCGACCGTGCCGGCGCCTACGCCGAGGGGGTCGCCCGTGGTGCT
CCCGAAGCGATCCAGGTCGCGGACCGGTGGCATTTGCTGCGAAATGCGAGCGACGCCCTGCGCGGGGTTCTCGAGCATCATCACCGTGATCTGCGCGAGG
CCGCCCGAACGGCCGCCCTGAAACCGGAACCGCTGACACTGGAGGAGAACCGTTCGGAACCGGCCGCTCCTCCATCCGAAACCGAACAACGGCCGTTGCG
AGCCGCGGAGCGGCGGTCGCGGGCGGCGCAGGAGCGCCGCGACGCCCGCTTCGCCGAGGTTGCACGCTTGCGTGAACAGGGCATGGCGCTGAAGGCCATT
GCCCGAGCCACCGGGATCGAACGCAAGACGGTGCGCCGCTGGTTGCGGGCCGGCCATGCACCGACATGGCGCCATGCCGCTCGCGCGACCAGCATCCTCG
ACCCGTATCGCGCCCATCTGGAGGAGCGGTGGCAAGCCGGGTGTCGCAATGGGGCGGCCCTCTGGCGCGACCTCAAGGGCCGGGGCTTTGCCGGACAGTA
TTCCGTTGTGCGGAATTGGGCGATGCAGCGGCGGCGAGAGGACCCGATCCTTAGAAAATCTACGGGACCGGTGCGCCACTCGGCGGCGACCAGAGTTACG
GAGCCGCCGACGCCTCGGCGGGCGGTGCGCCTGCTGACCACCGCCCTCGACGCGCTTTCCGAGGAGGACCGCCAGTTCGTCATCTCCTTGCGGGACCGCT
CGCCCGCCATCGCCACCGCCGCTGATCTGATCAGTCGCTTCACGACAATGGTGAAGGACAAGACGCCGACCATGTTCGATGGTTGGCTGCGTGAGACGGA
GGCCAGTGCCCTGGGGCCGTTCGCCGCCGGCATACGGCGCGACGAGGATGCCGTGCGCGCCGCGCTCACCGAGCCGTGGAGCAGCGGGCAAGTCGAGGGC
CACGTCAACCGGCTCAAGGTCATCAAGCGGGATATGTACGGCCGGGCCGGCTTCGATCTCCTACGCAGCCGGGTCCTGGCTCACGCCTAACGCGAACATC
ACATCCCCAAACACCTTTTACTCATCCACACAAAACTTCCAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1671 bp556 aa1201790+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MVLSLNLSLHSIGFLPGLHIIDQIDHGSPRLTLRAQQTTVSAPCTACGTPSRRIHGSYWRSLGDLACFGRPTVLLVRVRRFRCTAPTCSRRTFAESLPGI
AQWRSRQTDRLRSVHRSIGLALGGNPGARHAVAMGMPISRTTLLRRVRAGGNKPIPPVTVLGVDDWAWRKGHRYGTILCDLERRRVIDLLPDRSADTLAA
WLMTHPGISVVARDRAGAYAEGVARGAPEAIQVADRWHLLRNASDALRGVLEHHHRDLREAARTAALKPEPLTLEENRSEPAAPPSETEQRPLRAAERRS
RAAQERRDARFAEVARLREQGMALKAIARATGIERKTVRRWLRAGHAPTWRHAARATSILDPYRAHLEERWQAGCRNGAALWRDLKGRGFAGQYSVVRNW
AMQRRREDPILRKSTGPVRHSAATRVTEPPTPRRAVRLLTTALDALSEEDRQFVISLRDRSPAIATAADLISRFTTMVKDKTPTMFDGWLRETEASALGP
FAAGIRRDEDAVRAALTEPWSSGQVEGHVNRLKVIKRDMYGRAGFDLLRSRVLAHA

 

Blast result :
Comments
ISAzba9 is 95% aa similar to ISAzs8.
References
1] ISfinder annotation (2011)