ISCps6
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_003910 | ND | Colwellia psychrerythraea | Colwellia psychrerythraea 34H |
DNA section
IS Length : 1738 bp
Ends
IR Length : 20/25
IRL : CAGGCTGTGTGAAAACTATTGATCACCTTTTGGTCTAACCCTCAGTTTTT
IRR : CAGACTGTGTAAAAACTACTTTTCATTTACCCAAATCCCAATGTTTTCTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GACTGCTATG | GTGG | CGAAGCGGAC | 4 |
DNA sequence
CAGGCTGTGTGAAAACTATTGATCACCTTTTGGTCTAACCCTCAGTTTTTTATGATCAATCAATCTTAATTTTCAGCTCTCGAAGATAGCGTATCAACTA
TAATTAATAGGAGGAAAACAAGAACGAGAACTGTTGATATGTCCCACCATATTAAAGGCCAAGGTCGAAACCAAATAACCCTATTTCCTGAAGCATTGGA
CGATTTTGTCACCAAAGAAAATCACGTTCGTGTTGTTGATGCCTTTGTTGATGAGCTTGATTTACACGCTTTAGGATTCAACCGTGTTATCGCCAACAAC
ACAGGCCGTCCAGGTTATCATCCTGCCGCGTTGCTTAAGTTATACATTTATGGGTATTTGAACCGCATCCAGTCCTCCCGTCGTTTAGAAAAAGGATCAC
ATCGTAATGTTGAGTTAATGTGGTTACTCGAGCGTTTACAGCCAGATTTCAAAACGATTGCAGACTTCAGGAAAGACAATGGTAAGGCTATCACTAAAGT
TTGCCGTCACTTCATCGAGTTATGCCGTCAAATGAATATGTTCACCGATGCCGTCGTGGCTATCGATGGCAGTAAATTCAAAGCGGTTAACAGCAAGCAC
AACAATTACACGCCGAACAAAGTTAAAGATCATATTCGTCGTATGGAAACACATATTGAGAATTATTTGAGTCGGCTTGAAACCGCCGATGGCAATGATA
AAGTTGATGCTGTTCAAACCTCTGCGGCTGAGAAAATCGCATGGATGAAACAACGCGTAGCTGAACTCAAGGAACTTGCTGTACAAGTGGAGGCGCATCC
AGACAAACAACTTTCCACGGTTGACCCCGATGCTCGCTTACTTAAGACACAAGGCATGAACAGACAGGTTTGTTATAACGTTCAAAGCTCTGTTGATACG
AAACATCATTTGATAGTGACGCACGAAGTCACCAATACCAATGACCGTGGCAAGCTGGCCGATTTGACACGATTAACGCAGCAAGCATTGGCGCAAAAAA
ACATTACAGTGTTGGCAGACAAAGGTTACTACAGCGGACGTGATATCAAAGCAACTCAAGATATGGGGGCCTCTGCGCTTGTGCCCAAAGGGGATACGTC
AGGTGCTAAAAAGAAGGGGATCTTCAATCGGTCTTTATTCAAATATGACAAAGACCGAGACCTTTACGTCTGTCCTGCGGGGAATGAACTACCACATAAG
CGAAATGTTGAAGAAGGCGGAATGAAACTCAAGGTCTATGTTGACCACATTGCTTGCAGAAACTGTGATATTCGCGCTAAATGTACTCAATCAAAACGCG
AGCCACGAAAGATAAGGCGTTGGATACACGAAGGTGAAATGGAAGAAATGCTAACAAGATTGAAAAACGCACCTGACACGGTGCTCATTCGAAAACAAAC
TGTAGAACATCCTTTTGGCACCATTAAAATGTGGATGGGAGCAACTCACTTCCTTACCAAGCAACTGAAAAATGTCAGTACCGAGATGAGTCTTCATGTG
CTCGCTTATAACCTCAAACGAATGATGTCGATTGTGGGCAGTGAAAGTCTAATCGAAGCAATAAGGGCGTAGTTAGCCTTTTATTGTTAGCTCATATGCG
TGAAAAACGTGCTCATAAAGCGGATATCAGCTTCCTCAACCCAAAATAAATAACATACAAACAATTTACAGCGGAAATAATAAGGTGTGAGAAAACATTG
GGATTTGGGTAAATGAAAAGTAGTTTTTACACAGTCTG
TAATTAATAGGAGGAAAACAAGAACGAGAACTGTTGATATGTCCCACCATATTAAAGGCCAAGGTCGAAACCAAATAACCCTATTTCCTGAAGCATTGGA
CGATTTTGTCACCAAAGAAAATCACGTTCGTGTTGTTGATGCCTTTGTTGATGAGCTTGATTTACACGCTTTAGGATTCAACCGTGTTATCGCCAACAAC
ACAGGCCGTCCAGGTTATCATCCTGCCGCGTTGCTTAAGTTATACATTTATGGGTATTTGAACCGCATCCAGTCCTCCCGTCGTTTAGAAAAAGGATCAC
ATCGTAATGTTGAGTTAATGTGGTTACTCGAGCGTTTACAGCCAGATTTCAAAACGATTGCAGACTTCAGGAAAGACAATGGTAAGGCTATCACTAAAGT
TTGCCGTCACTTCATCGAGTTATGCCGTCAAATGAATATGTTCACCGATGCCGTCGTGGCTATCGATGGCAGTAAATTCAAAGCGGTTAACAGCAAGCAC
AACAATTACACGCCGAACAAAGTTAAAGATCATATTCGTCGTATGGAAACACATATTGAGAATTATTTGAGTCGGCTTGAAACCGCCGATGGCAATGATA
AAGTTGATGCTGTTCAAACCTCTGCGGCTGAGAAAATCGCATGGATGAAACAACGCGTAGCTGAACTCAAGGAACTTGCTGTACAAGTGGAGGCGCATCC
AGACAAACAACTTTCCACGGTTGACCCCGATGCTCGCTTACTTAAGACACAAGGCATGAACAGACAGGTTTGTTATAACGTTCAAAGCTCTGTTGATACG
AAACATCATTTGATAGTGACGCACGAAGTCACCAATACCAATGACCGTGGCAAGCTGGCCGATTTGACACGATTAACGCAGCAAGCATTGGCGCAAAAAA
ACATTACAGTGTTGGCAGACAAAGGTTACTACAGCGGACGTGATATCAAAGCAACTCAAGATATGGGGGCCTCTGCGCTTGTGCCCAAAGGGGATACGTC
AGGTGCTAAAAAGAAGGGGATCTTCAATCGGTCTTTATTCAAATATGACAAAGACCGAGACCTTTACGTCTGTCCTGCGGGGAATGAACTACCACATAAG
CGAAATGTTGAAGAAGGCGGAATGAAACTCAAGGTCTATGTTGACCACATTGCTTGCAGAAACTGTGATATTCGCGCTAAATGTACTCAATCAAAACGCG
AGCCACGAAAGATAAGGCGTTGGATACACGAAGGTGAAATGGAAGAAATGCTAACAAGATTGAAAAACGCACCTGACACGGTGCTCATTCGAAAACAAAC
TGTAGAACATCCTTTTGGCACCATTAAAATGTGGATGGGAGCAACTCACTTCCTTACCAAGCAACTGAAAAATGTCAGTACCGAGATGAGTCTTCATGTG
CTCGCTTATAACCTCAAACGAATGATGTCGATTGTGGGCAGTGAAAGTCTAATCGAAGCAATAAGGGCGTAGTTAGCCTTTTATTGTTAGCTCATATGCG
TGAAAAACGTGCTCATAAAGCGGATATCAGCTTCCTCAACCCAAAATAAATAACATACAAACAATTTACAGCGGAAATAATAAGGTGTGAGAAAACATTG
GGATTTGGGTAAATGAAAAGTAGTTTTTACACAGTCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1434 bp | 477 aa | 139 | 1572 | + | No |
Chemistry : DDE
ORF sequence :
MSHHIKGQGRNQITLFPEALDDFVTKENHVRVVDAFVDELDLHALGFNRVIANNTGRPGYHPAALLKLYIYGYLNRIQSSRRLEKGSHRNVELMWLLERL
QPDFKTIADFRKDNGKAITKVCRHFIELCRQMNMFTDAVVAIDGSKFKAVNSKHNNYTPNKVKDHIRRMETHIENYLSRLETADGNDKVDAVQTSAAEKI
AWMKQRVAELKELAVQVEAHPDKQLSTVDPDARLLKTQGMNRQVCYNVQSSVDTKHHLIVTHEVTNTNDRGKLADLTRLTQQALAQKNITVLADKGYYSG
RDIKATQDMGASALVPKGDTSGAKKKGIFNRSLFKYDKDRDLYVCPAGNELPHKRNVEEGGMKLKVYVDHIACRNCDIRAKCTQSKREPRKIRRWIHEGE
MEEMLTRLKNAPDTVLIRKQTVEHPFGTIKMWMGATHFLTKQLKNVSTEMSLHVLAYNLKRMMSIVGSESLIEAIRA
QPDFKTIADFRKDNGKAITKVCRHFIELCRQMNMFTDAVVAIDGSKFKAVNSKHNNYTPNKVKDHIRRMETHIENYLSRLETADGNDKVDAVQTSAAEKI
AWMKQRVAELKELAVQVEAHPDKQLSTVDPDARLLKTQGMNRQVCYNVQSSVDTKHHLIVTHEVTNTNDRGKLADLTRLTQQALAQKNITVLADKGYYSG
RDIKATQDMGASALVPKGDTSGAKKKGIFNRSLFKYDKDRDLYVCPAGNELPHKRNVEEGGMKLKVYVDHIACRNCDIRAKCTQSKREPRKIRRWIHEGE
MEEMLTRLKNAPDTVLIRKQTVEHPFGTIKMWMGATHFLTKQLKNVSTEMSLHVLAYNLKRMMSIVGSESLIEAIRA
Blast result :
Comments
ISCps6 is 69% aa similar to ISPa7.
References
1] ISfinder annotation (2011)
2] Methe,B.A., Nelson,K.E., Deming,J.W., Momen,B., Melamud,E., Zhang,X., Moult,J., Madupu,R., Nelson,W.C., Dodson,R.J., Brinkac,L.M., Daugherty,S.C., Durkin,A.S., DeBoy,R.T., Kolonay,J.F., Sullivan,S.A., Zhou,L., Davidsen,T.M., Wu,M., Huston,A.L., Lewis,M., Weaver,B., Weidman,J.F., Khouri,H., Utterback,T.R., Feldblyum,T.V. and Fraser,C.M. (2005) Proc. Natl. Acad. Sci. U.S.A. 102 (31), 10913-10918.
2] Methe,B.A., Nelson,K.E., Deming,J.W., Momen,B., Melamud,E., Zhang,X., Moult,J., Madupu,R., Nelson,W.C., Dodson,R.J., Brinkac,L.M., Daugherty,S.C., Durkin,A.S., DeBoy,R.T., Kolonay,J.F., Sullivan,S.A., Zhou,L., Davidsen,T.M., Wu,M., Huston,A.L., Lewis,M., Weaver,B., Weidman,J.F., Khouri,H., Utterback,T.R., Feldblyum,T.V. and Fraser,C.M. (2005) Proc. Natl. Acad. Sci. U.S.A. 102 (31), 10913-10918.