ISAzs11
- Family ISAs1
- Group
Isoform Synonym(s) ISazl23_01
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013854 | ND | Azospirillum sp. | Azospirillum sp. B510 plasmid pAB510b Azospirillum sp. B510 plasmid pAB510f Azospirillum sp. B510 plasmid pAB510a Azospirillum sp. B510 Azospirillum sp. B510 plasmid pAB510c |
DNA section
IS Length : 1224 bp
Ends
IR Length : 16/18
IRL : CAGGGGAATCGCATTTGGAAAAATCGAGTAGCGTGTGTGAGAGAAAAGGA
IRR : CAGGGTCATCGCATTTGGCCGAGGATGGATCTTGCGAACTCGTCGGACCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGGACGCATC | TGGCCTGACG | CCAGCGCCGT | 10 |
| TCTTCCCAGG | CAGAAATGCT | TGTGCCTCAT | 10 |
| GGGAAGCCCT | GCCTTGCCGC | CGCCGCGGCT | 10 |
| TCGGAGCCCTGGATCTGGCC | CATCAGCGACATTGACCGCT | 0 | |
| GATTCCCCTG | GCCCTGGGTG | CAGGGCGATT | 10 |
| CGACCTGACC | GCTGCGGCGG | CCCGACGCCT | 10 |
DNA sequence
CAGGGGAATCGCATTTGGAAAAATCGAGTAGCGTGTGTGAGAGAAAAGGATTCTGTAAGGGGCTTTATCGCCGATTTTGGAGCCCCCGATGCAATCGTGG
TTTGAGAAAGCGTTCGATGCGTTGCCGGACCCACGCACGGGCAACGCCAAGCGGCACGACCTGCTGGAGATCCTGACGATCGCGCTGACGGCAACGGTGT
GCGGGGCGGAGAGCTGTGCCGACTTTGCCGACTTCGCGGTGGATCGCGAGGGGCTGTTTCGGTCGTTTTTGCGTCTGGAGAACGGGGTGCCGAGTCACGA
CACCTTCTCGCGCATCTTCCGGCTGCTGGACCCGGTGGCCTTTGCCGCCTGCTTTGGCCGTTTCCTGGAGGGGCTGGGAACGGCCGGGGCTGGGGTGATC
GCCATCGACGGCAAGACGTTACGCCGCTCCTTCGATGACGCGGCCCGGTCCAACCCGCTGGCGGTGGTGACGGCCTTCGCCTCGGCGACGCGGCTGGTGG
TGGGCCAGCACAGCTACCGGGTGGCCGAGGGCGACAGCGAGATCCTGGCCGCCCGTGCCCTGCTGGAGTGCCTGGATCTCCAGGGCCATCTGGTCACCGC
CGACGCCATCCATTGTCAGGAGGAGACCGCCCGCCTCATCCGGAAGCGCGGCGGCGACTACCTGCTGCGGCTGAAGGGCAACCATCCCGCCCTGCTCGCC
ATGGTCGAGGAGTACTTCACCGACCCGGAACTGTGCGCCGGGCTGGCGAGTGCCACGACCACCGACGCCGATCACGGCCGGATCGAGACCCGGCGGGCCT
GGGTGTGTCACGAATTGGATTGGCTGCGCGGTCCCAAAGCGGCCAGCAGCGAACCGGTCCTGCTGCCCGACATGGCCTTTCTGGGCTTGATCGAGGCTAC
CGTCGAGCATCGCGGCAAGACCACCGTGACCCGGCACTACCACATCGCCTCGCGCGCGCTCAGCGCGGCCGACTATCTGGAGGCCGCCCGCGCCCATTGG
TCGATCGAGAACGGGTTGCACTGGATGCTCGACGTCGTCTTCGACGAGGATCGCGCCCGCAACCGCAAGGATCACGGGCCGGAAAACCTCGCCACCCTCC
GCAAGCTCGCGCTCAACATCCTGAACCGCGCCCGTCGCGATATCTCCGTCCGCCGAAAGCGAAAGCGCTCAGGATGGTCCGACGAGTTCGCAAGATCCAT
CCTCGGCCAAATGCGATGACCCTG
TTTGAGAAAGCGTTCGATGCGTTGCCGGACCCACGCACGGGCAACGCCAAGCGGCACGACCTGCTGGAGATCCTGACGATCGCGCTGACGGCAACGGTGT
GCGGGGCGGAGAGCTGTGCCGACTTTGCCGACTTCGCGGTGGATCGCGAGGGGCTGTTTCGGTCGTTTTTGCGTCTGGAGAACGGGGTGCCGAGTCACGA
CACCTTCTCGCGCATCTTCCGGCTGCTGGACCCGGTGGCCTTTGCCGCCTGCTTTGGCCGTTTCCTGGAGGGGCTGGGAACGGCCGGGGCTGGGGTGATC
GCCATCGACGGCAAGACGTTACGCCGCTCCTTCGATGACGCGGCCCGGTCCAACCCGCTGGCGGTGGTGACGGCCTTCGCCTCGGCGACGCGGCTGGTGG
TGGGCCAGCACAGCTACCGGGTGGCCGAGGGCGACAGCGAGATCCTGGCCGCCCGTGCCCTGCTGGAGTGCCTGGATCTCCAGGGCCATCTGGTCACCGC
CGACGCCATCCATTGTCAGGAGGAGACCGCCCGCCTCATCCGGAAGCGCGGCGGCGACTACCTGCTGCGGCTGAAGGGCAACCATCCCGCCCTGCTCGCC
ATGGTCGAGGAGTACTTCACCGACCCGGAACTGTGCGCCGGGCTGGCGAGTGCCACGACCACCGACGCCGATCACGGCCGGATCGAGACCCGGCGGGCCT
GGGTGTGTCACGAATTGGATTGGCTGCGCGGTCCCAAAGCGGCCAGCAGCGAACCGGTCCTGCTGCCCGACATGGCCTTTCTGGGCTTGATCGAGGCTAC
CGTCGAGCATCGCGGCAAGACCACCGTGACCCGGCACTACCACATCGCCTCGCGCGCGCTCAGCGCGGCCGACTATCTGGAGGCCGCCCGCGCCCATTGG
TCGATCGAGAACGGGTTGCACTGGATGCTCGACGTCGTCTTCGACGAGGATCGCGCCCGCAACCGCAAGGATCACGGGCCGGAAAACCTCGCCACCCTCC
GCAAGCTCGCGCTCAACATCCTGAACCGCGCCCGTCGCGATATCTCCGTCCGCCGAAAGCGAAAGCGCTCAGGATGGTCCGACGAGTTCGCAAGATCCAT
CCTCGGCCAAATGCGATGACCCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1131 bp | 376 aa | 89 | 1219 | + | No |
Chemistry : Unknow
ORF sequence :
MQSWFEKAFDALPDPRTGNAKRHDLLEILTIALTATVCGAESCADFADFAVDREGLFRSFLRLENGVPSHDTFSRIFRLLDPVAFAACFGRFLEGLGTAG
AGVIAIDGKTLRRSFDDAARSNPLAVVTAFASATRLVVGQHSYRVAEGDSEILAARALLECLDLQGHLVTADAIHCQEETARLIRKRGGDYLLRLKGNHP
ALLAMVEEYFTDPELCAGLASATTTDADHGRIETRRAWVCHELDWLRGPKAASSEPVLLPDMAFLGLIEATVEHRGKTTVTRHYHIASRALSAADYLEAA
RAHWSIENGLHWMLDVVFDEDRARNRKDHGPENLATLRKLALNILNRARRDISVRRKRKRSGWSDEFARSILGQMR
AGVIAIDGKTLRRSFDDAARSNPLAVVTAFASATRLVVGQHSYRVAEGDSEILAARALLECLDLQGHLVTADAIHCQEETARLIRKRGGDYLLRLKGNHP
ALLAMVEEYFTDPELCAGLASATTTDADHGRIETRRAWVCHELDWLRGPKAASSEPVLLPDMAFLGLIEATVEHRGKTTVTRHYHIASRALSAADYLEAA
RAHWSIENGLHWMLDVVFDEDRARNRKDHGPENLATLRKLALNILNRARRDISVRRKRKRSGWSDEFARSILGQMR
Blast result :
Comments
ISAzs11 is 56% aa similar to ISRpa5.
References
1] ISfinder annotation (2010).
2] Kaneko,T., Minamisawa,K., Isawa,T., Nakatsukasa,H., Mitsui,H., Kawaharada,Y., Nakamura,Y., Watanabe,A., Kawashima,K., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Sato,S. (2010) DNA Res. 17 (1), 37-50.
2] Kaneko,T., Minamisawa,K., Isawa,T., Nakatsukasa,H., Mitsui,H., Kawaharada,Y., Nakamura,Y., Watanabe,A., Kawashima,K., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Sato,S. (2010) DNA Res. 17 (1), 37-50.