ISAzs5
- Family ISAs1
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013854 | ND | Azospirillum sp. | Azospirillum sp. B510 plasmid pAB510b Azospirillum sp. B510 plasmid pAB510f Azospirillum sp. B510 plasmid pAB510a Azospirillum sp. B510 Azospirillum sp. B510 plasmid pAB510d Azospirillum sp. B510 plasmid pAB510c Azospirillum sp. B510 plasmid pAB510e |
DNA section
IS Length : 1333 bp
Ends
IR Length : 20/23
IRL : CAGGGCTCCGAAGTCGGGTTAACAGCGGTTTACGAATTGGGAAGTTTCTG
IRR : CAGGGCTCCGAATCCGTGTTAACGGATATTAACGTCGAGGATAGCGTTGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGTGCCGACC | GAGCCGTTCC | 0 | |
| TAGGGTGGTG | GGCGGACCTC | TGGGCGGGGG | 10 |
| CAGTATGGCG | GCAGGCCGAT | CGGGCAGGTC | 10 |
| AAGCGTCGGA | TCGCCGCGGG | TGCGACTTCC | 10 |
| CAGCGGACGC | ATCTGTCCGG | TGGGGCAGGA | 10 |
| GATAGCGGCA | GG | AGCCGAGTGC | 2 |
DNA sequence
CAGGGCTCCGAAGTCGGGTTAACAGCGGTTTACGAATTGGGAAGTTTCTGATTCGGTGGAGGCTCTCGTCTTGGAAGGTCCTCCCATGAGTTCGATCGAA
GCCGGCTTTGGTGAGAAATCGCGGCTGAAGGCGCTGCTGGAACATTTTTCGCGGATCGACGACCCGCGTGCTCCCTGGCGGGTCGCCTATCCGTTACCGG
AGATCCTGCTTCTGGCGGTGTGCGGGACGATCGCGGATTGCGAGGATTACGAGGCGATCGCCGCCTGGGGTGAAGCGCGGCTCGACTTTCTGCGGCGCTT
CCAGCCCTATCACCATGGGGTGCCGAGCGGACGCTGGCTGACCGTGTTCATGAACCGGATCCCTCCCGGCCTGTTCCAGGACTGCTTCCTGTCCTGGGTG
CGCGAGGCGTGGCCCGACCGGCCGGAACTGGTCGCCATCGACGGCAAGACCTCGCGACGCAGCCATGACCGCAGCCTTGGGCAGGCCCCTTTGCACTTGG
TCTCGGCCTTCGCCACCACCAGCCGTCTGGTCCTCGGCCAGGAGGCCGTCGAGGACAAAGCCAGCGAACTGGCGGCCATTCCGGTTCTGCTGGAGCGCCT
GGCGACCGAGGGCGGGCTCAAGGGCGCGATCGTCACCATCGACGCCATCGCCTGCAACGCCACCATCGCCCAGGCCGTTCGCGACGCCGGGGCCGACTAT
CTGCTGGCGGTCAAAGCCAACCAGCCCACCCTGCGCGACGAGATCGAGAGTTTCTTCACCAGCGCACCGCCGGAGACGCTCGATCACGCCGCCGATATCG
ACAAGGGCCATGGCCGGATCGAGCAGCGCGCGGTCACGGTCGCGCGCCAGGTCGATTGGTTGAGCGGCGCGCGGCGTTTTCCCGGCGAAGTCCGCCTGCC
CGCCGTCGCCGCCATCGTTCGGGTGGTCAGCAAGACCGAGCTGAAGGATCGTTGCCGCACCGACACGCGCTATTACATCACCTCCGCCCCGCTCGCCGCC
CAGGCGGCGGCCGAGGCCGTGCGCGGCCATTGGCGCATCGAGAACCAACTGCACTGGCTGCTCGACGTCGTCTTCAACGAGGACCAGTCCCGCTTGCGCA
AAGGCCACGGCGCCCTGAACATGGCCGTCGTCCGCCACTTCGCCATCAACCTCGTCCGCAAGGCCGCCGAACCCGCCCGGCCGCGCTCCGGATTACGGCG
CGCCACCAAAAAGCCGGCCGCCACTCCCAGACCCACCAGCATCAAGCTCCGCAGGAAGCTGGCAGGCTGGGACACCGATTACCTCAACGCTATCCTCGAC
GTTAATATCCGTTAACACGGATTCGGAGCCCTG
GCCGGCTTTGGTGAGAAATCGCGGCTGAAGGCGCTGCTGGAACATTTTTCGCGGATCGACGACCCGCGTGCTCCCTGGCGGGTCGCCTATCCGTTACCGG
AGATCCTGCTTCTGGCGGTGTGCGGGACGATCGCGGATTGCGAGGATTACGAGGCGATCGCCGCCTGGGGTGAAGCGCGGCTCGACTTTCTGCGGCGCTT
CCAGCCCTATCACCATGGGGTGCCGAGCGGACGCTGGCTGACCGTGTTCATGAACCGGATCCCTCCCGGCCTGTTCCAGGACTGCTTCCTGTCCTGGGTG
CGCGAGGCGTGGCCCGACCGGCCGGAACTGGTCGCCATCGACGGCAAGACCTCGCGACGCAGCCATGACCGCAGCCTTGGGCAGGCCCCTTTGCACTTGG
TCTCGGCCTTCGCCACCACCAGCCGTCTGGTCCTCGGCCAGGAGGCCGTCGAGGACAAAGCCAGCGAACTGGCGGCCATTCCGGTTCTGCTGGAGCGCCT
GGCGACCGAGGGCGGGCTCAAGGGCGCGATCGTCACCATCGACGCCATCGCCTGCAACGCCACCATCGCCCAGGCCGTTCGCGACGCCGGGGCCGACTAT
CTGCTGGCGGTCAAAGCCAACCAGCCCACCCTGCGCGACGAGATCGAGAGTTTCTTCACCAGCGCACCGCCGGAGACGCTCGATCACGCCGCCGATATCG
ACAAGGGCCATGGCCGGATCGAGCAGCGCGCGGTCACGGTCGCGCGCCAGGTCGATTGGTTGAGCGGCGCGCGGCGTTTTCCCGGCGAAGTCCGCCTGCC
CGCCGTCGCCGCCATCGTTCGGGTGGTCAGCAAGACCGAGCTGAAGGATCGTTGCCGCACCGACACGCGCTATTACATCACCTCCGCCCCGCTCGCCGCC
CAGGCGGCGGCCGAGGCCGTGCGCGGCCATTGGCGCATCGAGAACCAACTGCACTGGCTGCTCGACGTCGTCTTCAACGAGGACCAGTCCCGCTTGCGCA
AAGGCCACGGCGCCCTGAACATGGCCGTCGTCCGCCACTTCGCCATCAACCTCGTCCGCAAGGCCGCCGAACCCGCCCGGCCGCGCTCCGGATTACGGCG
CGCCACCAAAAAGCCGGCCGCCACTCCCAGACCCACCAGCATCAAGCTCCGCAGGAAGCTGGCAGGCTGGGACACCGATTACCTCAACGCTATCCTCGAC
GTTAATATCCGTTAACACGGATTCGGAGCCCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1230 bp | 409 aa | 86 | 1315 | + | No |
Chemistry : Unknow
ORF sequence :
MSSIEAGFGEKSRLKALLEHFSRIDDPRAPWRVAYPLPEILLLAVCGTIADCEDYEAIAAWGEARLDFLRRFQPYHHGVPSGRWLTVFMNRIPPGLFQDC
FLSWVREAWPDRPELVAIDGKTSRRSHDRSLGQAPLHLVSAFATTSRLVLGQEAVEDKASELAAIPVLLERLATEGGLKGAIVTIDAIACNATIAQAVRD
AGADYLLAVKANQPTLRDEIESFFTSAPPETLDHAADIDKGHGRIEQRAVTVARQVDWLSGARRFPGEVRLPAVAAIVRVVSKTELKDRCRTDTRYYITS
APLAAQAAAEAVRGHWRIENQLHWLLDVVFNEDQSRLRKGHGALNMAVVRHFAINLVRKAAEPARPRSGLRRATKKPAATPRPTSIKLRRKLAGWDTDYL
NAILDVNIR
FLSWVREAWPDRPELVAIDGKTSRRSHDRSLGQAPLHLVSAFATTSRLVLGQEAVEDKASELAAIPVLLERLATEGGLKGAIVTIDAIACNATIAQAVRD
AGADYLLAVKANQPTLRDEIESFFTSAPPETLDHAADIDKGHGRIEQRAVTVARQVDWLSGARRFPGEVRLPAVAAIVRVVSKTELKDRCRTDTRYYITS
APLAAQAAAEAVRGHWRIENQLHWLLDVVFNEDQSRLRKGHGALNMAVVRHFAINLVRKAAEPARPRSGLRRATKKPAATPRPTSIKLRRKLAGWDTDYL
NAILDVNIR
Blast result :
Comments
ISAzs5 is 75% aa similar to ISRce1.
References
1] ISfinder annotation (2010)
2] Kaneko,T., Minamisawa,K., Isawa,T., Nakatsukasa,H., Mitsui,H., Kawaharada,Y., Nakamura,Y., Watanabe,A., Kawashima,K., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Sato,S. (2010) DNA Res. 17 (1), 37-50.
2] Kaneko,T., Minamisawa,K., Isawa,T., Nakatsukasa,H., Mitsui,H., Kawaharada,Y., Nakamura,Y., Watanabe,A., Kawashima,K., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Sato,S. (2010) DNA Res. 17 (1), 37-50.