ISWpi2

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Wolbachia pipientis
Wolbachia pipientis
Wolbachia sp. wRi
Wolbachia endosymbiont of Drosophila simulans
DNA section
IS Length : 1189 bp

Ends


IR Length : 20/26

IRL : TGTATTAAATAAGACTTGACCTGACACTTTAAAAAAGTAAGTTAAAAATA
IRR : TGTAAAAGACAAGATTTGATCTGACAGACAAGAATTAACTGACAGAAGAA

Insertion site


Left flankDirect repeatRight flankDR Length
GGGAATAATTGATGTTTACA0
ATCGGATTTAGATTCCGCTAAC2
CAACATCAACTAATCTTCAT0
AATCGTAATTCTGTTTGCTA0
GCGGCTTGACTTTTAACTTA0

DNA sequence

TGTATTAAATAAGACTTGACCTGACACTTTAAAAAAGTAAGTTAAAAATAATAAAAATAAAGGAGTGTTAGATATGAGTACAATACAGACAAAAATATTA
AAACCAAAGCTAGAGAACTAGCAAAACAACTAGGAAATGTGTCTCAAGCATGCAAAGTGATGGGATACTCAAGAGATACATTTTATCGCTTTAAGGAGTT
ATATGAAAATGGAGGAGAGGAAGCATTACATGAAATAAGTAAGAAAAAACCGCTATTAGCAAACAGAGTTTCCGACGATATAGAAAGAGCAGTGATTGGT
ATAGCAACAGAATTTCCAGCATATGGGCAAGAAAGAGCTGCAAATGAACTGAGAAAAAGAGGTATAATAATTTCTCAGGGAGGAGTAAGGTCTGTATGGC
TAAGAAATGACCTTGAAACTCTCAAAAAGAGACTTAAAGCACTAGAGACAAAAGTAGCTCAAGACGGAATCATTTTAACTGAAGAACAACTTGCAGCTTT
AGAAAAAGTGAAAGAACAAAGGGAAGCTCATGGTGAAATTGAGACGCAACATCCAGGTTATTTGGGTTCTCAAGATACCTATTATGTGGGCAATATCAAA
GGTATAGGGCGCATTTATCAGCAAACTTTTGTTGATACTTATTCCAGAGTTGCAATGGTTAAACTTTACACGGACAGAACAGCTATTACAGCTGCAGATC
TTCTCAACGATAGAGTTATTCCATTTTTTGATGAGCAGAAAATTCCATTATTACGCATTTTAACTGATAGGGGTACGGAGTACTGTGGCAAGCCCGAAAA
TCACGCTTATCAGCTTTATTTGGGCATAGAAAACATCGATCATTCTAGAACTAAAGCCAACTCTCCACAGACTAATGGCATATGTGAAAGGTTTCATAGA
ACCATGCAAGATGAGTGTTACAATATCATCTTTAGAAAGAAAATCTACAGTTCTTTGGAAGATCTACAGATTGATGTTGATCATTGGTTGCGTTCTTATA
ATGAGACAAGACCTCACTCGGGTAAATATTGCTATGGCAAAACGCCTATGCAAACTTTTCTTGATAGCAAATATATTGCTTTTCAGAAAAATATTAGTAG
CATTACACAAGAGCCTGATATTAGTTTTGACTACCTCAATTCTTCTGTCAGTTAATTCTTGTCTGTCAGATCAAATCTTGTCTTTTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1017 bp338 aa1391155+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSQACKVMGYSRDTFYRFKELYENGGEEALHEISKKKPLLANRVSDDIERAVIGIATEFPAYGQERAANELRKRGIIISQGGVRSVWLRNDLETLKKRLK
ALETKVAQDGIILTEEQLAALEKVKEQREAHGEIETQHPGYLGSQDTYYVGNIKGIGRIYQQTFVDTYSRVAMVKLYTDRTAITAADLLNDRVIPFFDEQ
KIPLLRILTDRGTEYCGKPENHAYQLYLGIENIDHSRTKANSPQTNGICERFHRTMQDECYNIIFRKKIYSSLEDLQIDVDHWLRSYNETRPHSGKYCYG
KTPMQTFLDSKYIAFQKNISSITQEPDISFDYLNSSVS

 

Blast result :
Comments
ISWpi2 is 84% aa similar to ISCaa12.
Putative boundaries identified by aligning multiple copies with flanking sequences and identification of inverted repeats.
References
1] Cerveau N., and Cordaux R. (2010) Direct submission (manuscript in preparation)