ISWpi2
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Wolbachia pipientis | Wolbachia pipientis Wolbachia sp. wRi Wolbachia endosymbiont of Drosophila simulans |
DNA section
IS Length : 1189 bp
Ends
IR Length : 20/26
IRL : TGTATTAAATAAGACTTGACCTGACACTTTAAAAAAGTAAGTTAAAAATA
IRR : TGTAAAAGACAAGATTTGATCTGACAGACAAGAATTAACTGACAGAAGAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGAATAATT | GATGTTTACA | 0 | |
ATCGGATTTA | GA | TTCCGCTAAC | 2 |
CAACATCAAC | TAATCTTCAT | 0 | |
AATCGTAATT | CTGTTTGCTA | 0 | |
GCGGCTTGAC | TTTTAACTTA | 0 |
DNA sequence
TGTATTAAATAAGACTTGACCTGACACTTTAAAAAAGTAAGTTAAAAATAATAAAAATAAAGGAGTGTTAGATATGAGTACAATACAGACAAAAATATTA
AAACCAAAGCTAGAGAACTAGCAAAACAACTAGGAAATGTGTCTCAAGCATGCAAAGTGATGGGATACTCAAGAGATACATTTTATCGCTTTAAGGAGTT
ATATGAAAATGGAGGAGAGGAAGCATTACATGAAATAAGTAAGAAAAAACCGCTATTAGCAAACAGAGTTTCCGACGATATAGAAAGAGCAGTGATTGGT
ATAGCAACAGAATTTCCAGCATATGGGCAAGAAAGAGCTGCAAATGAACTGAGAAAAAGAGGTATAATAATTTCTCAGGGAGGAGTAAGGTCTGTATGGC
TAAGAAATGACCTTGAAACTCTCAAAAAGAGACTTAAAGCACTAGAGACAAAAGTAGCTCAAGACGGAATCATTTTAACTGAAGAACAACTTGCAGCTTT
AGAAAAAGTGAAAGAACAAAGGGAAGCTCATGGTGAAATTGAGACGCAACATCCAGGTTATTTGGGTTCTCAAGATACCTATTATGTGGGCAATATCAAA
GGTATAGGGCGCATTTATCAGCAAACTTTTGTTGATACTTATTCCAGAGTTGCAATGGTTAAACTTTACACGGACAGAACAGCTATTACAGCTGCAGATC
TTCTCAACGATAGAGTTATTCCATTTTTTGATGAGCAGAAAATTCCATTATTACGCATTTTAACTGATAGGGGTACGGAGTACTGTGGCAAGCCCGAAAA
TCACGCTTATCAGCTTTATTTGGGCATAGAAAACATCGATCATTCTAGAACTAAAGCCAACTCTCCACAGACTAATGGCATATGTGAAAGGTTTCATAGA
ACCATGCAAGATGAGTGTTACAATATCATCTTTAGAAAGAAAATCTACAGTTCTTTGGAAGATCTACAGATTGATGTTGATCATTGGTTGCGTTCTTATA
ATGAGACAAGACCTCACTCGGGTAAATATTGCTATGGCAAAACGCCTATGCAAACTTTTCTTGATAGCAAATATATTGCTTTTCAGAAAAATATTAGTAG
CATTACACAAGAGCCTGATATTAGTTTTGACTACCTCAATTCTTCTGTCAGTTAATTCTTGTCTGTCAGATCAAATCTTGTCTTTTACA
AAACCAAAGCTAGAGAACTAGCAAAACAACTAGGAAATGTGTCTCAAGCATGCAAAGTGATGGGATACTCAAGAGATACATTTTATCGCTTTAAGGAGTT
ATATGAAAATGGAGGAGAGGAAGCATTACATGAAATAAGTAAGAAAAAACCGCTATTAGCAAACAGAGTTTCCGACGATATAGAAAGAGCAGTGATTGGT
ATAGCAACAGAATTTCCAGCATATGGGCAAGAAAGAGCTGCAAATGAACTGAGAAAAAGAGGTATAATAATTTCTCAGGGAGGAGTAAGGTCTGTATGGC
TAAGAAATGACCTTGAAACTCTCAAAAAGAGACTTAAAGCACTAGAGACAAAAGTAGCTCAAGACGGAATCATTTTAACTGAAGAACAACTTGCAGCTTT
AGAAAAAGTGAAAGAACAAAGGGAAGCTCATGGTGAAATTGAGACGCAACATCCAGGTTATTTGGGTTCTCAAGATACCTATTATGTGGGCAATATCAAA
GGTATAGGGCGCATTTATCAGCAAACTTTTGTTGATACTTATTCCAGAGTTGCAATGGTTAAACTTTACACGGACAGAACAGCTATTACAGCTGCAGATC
TTCTCAACGATAGAGTTATTCCATTTTTTGATGAGCAGAAAATTCCATTATTACGCATTTTAACTGATAGGGGTACGGAGTACTGTGGCAAGCCCGAAAA
TCACGCTTATCAGCTTTATTTGGGCATAGAAAACATCGATCATTCTAGAACTAAAGCCAACTCTCCACAGACTAATGGCATATGTGAAAGGTTTCATAGA
ACCATGCAAGATGAGTGTTACAATATCATCTTTAGAAAGAAAATCTACAGTTCTTTGGAAGATCTACAGATTGATGTTGATCATTGGTTGCGTTCTTATA
ATGAGACAAGACCTCACTCGGGTAAATATTGCTATGGCAAAACGCCTATGCAAACTTTTCTTGATAGCAAATATATTGCTTTTCAGAAAAATATTAGTAG
CATTACACAAGAGCCTGATATTAGTTTTGACTACCTCAATTCTTCTGTCAGTTAATTCTTGTCTGTCAGATCAAATCTTGTCTTTTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1017 bp | 338 aa | 139 | 1155 | + | No |
Chemistry : DDE
ORF sequence :
MSQACKVMGYSRDTFYRFKELYENGGEEALHEISKKKPLLANRVSDDIERAVIGIATEFPAYGQERAANELRKRGIIISQGGVRSVWLRNDLETLKKRLK
ALETKVAQDGIILTEEQLAALEKVKEQREAHGEIETQHPGYLGSQDTYYVGNIKGIGRIYQQTFVDTYSRVAMVKLYTDRTAITAADLLNDRVIPFFDEQ
KIPLLRILTDRGTEYCGKPENHAYQLYLGIENIDHSRTKANSPQTNGICERFHRTMQDECYNIIFRKKIYSSLEDLQIDVDHWLRSYNETRPHSGKYCYG
KTPMQTFLDSKYIAFQKNISSITQEPDISFDYLNSSVS
ALETKVAQDGIILTEEQLAALEKVKEQREAHGEIETQHPGYLGSQDTYYVGNIKGIGRIYQQTFVDTYSRVAMVKLYTDRTAITAADLLNDRVIPFFDEQ
KIPLLRILTDRGTEYCGKPENHAYQLYLGIENIDHSRTKANSPQTNGICERFHRTMQDECYNIIFRKKIYSSLEDLQIDVDHWLRSYNETRPHSGKYCYG
KTPMQTFLDSKYIAFQKNISSITQEPDISFDYLNSSVS
Blast result :
Comments
ISWpi2 is 84% aa similar to ISCaa12.
Putative boundaries identified by aligning multiple copies with flanking sequences and identification of inverted repeats.
Putative boundaries identified by aligning multiple copies with flanking sequences and identification of inverted repeats.
References
1] Cerveau N., and Cordaux R. (2010) Direct submission (manuscript in preparation)