ISVa3
- Family IS91
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY255699 | ND | Vibrio anguillarum | Listonella anguillarum 775 plasmid pJM1 Listonella anguillarum plasmid pEIB1 Vibrio anguillarum Listonella anguilarum Listonella anguillarum 775 |
DNA section
IS Length : 1508 bp
Ends
oriIS : TTAGCGATGCTACGCATCGAGCTAGGGCGCTGTTAATTCATTAATATTCTTATTATTCATAGTGCGTTATCCTATCCTTACATTACCTTCCTCTAGATTT II struct. : No
terIS : AACGACCTAATTATCTCACTTTCAGCAAACGCTCACGACTCAAACAGGAGATTTACTTCGCCTGCCAAACTTGATGGTTAGGATTGAAATTCCTAACCAT II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TTCTTCATAT CAAG | GAAC TTAGCTCCAC | ||
GAAACGCAAC CAAG | GAAC GCAGTGAGGC | ||
GCATCTGCAT CAAG | CAAG CGAAGCGCTG |
DNA sequence
TTAGCGATGCTACGCATCGAGCTAGGGCGCTGTTAATTCATTAATATTCTTATTATTCATAGTGCGTTATCCTATCCTTACATTACCTTCCTCTAGATTT
TTACGTGGTTCAATACTCAGGTCGTAGACGTCGCCACCACACACTAAAAGAATTTGTTCCCCGCGCAACGAAACTCCTATTTGAAAAAGACAACGCTTGG
GAAAAAGTGCTTTGGAAACACGCTCAGACCTTCAGCCTTTGGCAAATCACTTGCGTGGAACGCATGCTCGCGTGCGGCACCAATATGATGGGCGCCAAAC
ACTACGATTGCGGAACATCTAATTGCCCGCACACTAAGGTCGTCTGTCAAAGCTGCAAGACGAAGGCTTGCAGCTCTTGTGGTACGAAATCCACCGAGCA
ATGGATACACACTCAGCTCGATGTCATGCCTGATTGTGAGCACCAGCACATCACCTTCACTATGCCGAGCGAGCTATGGCCCATCTTCGAAGCCAATCCT
ACATTACTCAATGATTTGTTCTCTCTTGCAGCCGACACGCTGTTAGAGTGGGCAAAAAAGCATGGACTTGAAGTGGGGATATTCGGTGCCCTTCATACTT
ATGGCCGAGCCCTCAACTGGCATCCACACATCCATTTATCGGTTACCCGTGGAGGGTTAGATAAACACAATACTTGGAAGCCTATCTATTTTAAAAAGAA
ACATGTCGAGTATCACTGGCGGCGCACTCTCATCAGGCTTCTCAGACAAAAATACGACGACCTCAACTTATCCACATCGACCACCCATCACATTCAATAT
TACCGTCAATGGAACTTCTTCTTAGAGCGTCACTATCAGCGCTACTGGAATATTCACTTTGCAAAAAAAACGAAAGTGCTAAAGCAAACGGTGAATTATC
TGGGTCGTTACCTGAAGCGCCCACCGATATCCGCATCGAGGCTGCGTCATTATAGCGGGGGAACGGTAGTCTTTAAGTATCTAGACCATCGAGACGGAAC
CCATAAAACGAAGACGTTGACGCAGGAAGAGATGATATTACGGTACGTGAGTCATATCCCGCAGCACCATTTTAAAATGGTGCGTTACTATGGTTTTCTG
TCCAACAGAAAACGAGGGCGCCTACTTCCTTTGGTGTATTTAGCGTTAGAAAAGAAGAGTCTGGAACAGGCTGAGCCGCTCACGTATGCCAAACAATACA
AAGGTTTTACAGGCAATGACCCGTACCAGTGTGTGCTATGCGGAGGCAGAATGGAATTTACAGGTTTTATGAAAGGTCCGAAAAATGATGAACTATTGGA
TAGTCGTCGAATGAGCATGCGCGAAGCGCGGCGATTAAGCGTAGCTGCGTAGGATAAGTCCGTCTAAATTTAGTAAATGAGTGGAAAAAATACCCAAACT
GCTGGTAAAACGACCTAATTATCTCACTTTCAGCAAACGCTCACGACTCAAACAGGAGATTTACTTCGCCTGCCAAACTTGATGGTTAGGATTGAAATTC
CTAACCAT
TTACGTGGTTCAATACTCAGGTCGTAGACGTCGCCACCACACACTAAAAGAATTTGTTCCCCGCGCAACGAAACTCCTATTTGAAAAAGACAACGCTTGG
GAAAAAGTGCTTTGGAAACACGCTCAGACCTTCAGCCTTTGGCAAATCACTTGCGTGGAACGCATGCTCGCGTGCGGCACCAATATGATGGGCGCCAAAC
ACTACGATTGCGGAACATCTAATTGCCCGCACACTAAGGTCGTCTGTCAAAGCTGCAAGACGAAGGCTTGCAGCTCTTGTGGTACGAAATCCACCGAGCA
ATGGATACACACTCAGCTCGATGTCATGCCTGATTGTGAGCACCAGCACATCACCTTCACTATGCCGAGCGAGCTATGGCCCATCTTCGAAGCCAATCCT
ACATTACTCAATGATTTGTTCTCTCTTGCAGCCGACACGCTGTTAGAGTGGGCAAAAAAGCATGGACTTGAAGTGGGGATATTCGGTGCCCTTCATACTT
ATGGCCGAGCCCTCAACTGGCATCCACACATCCATTTATCGGTTACCCGTGGAGGGTTAGATAAACACAATACTTGGAAGCCTATCTATTTTAAAAAGAA
ACATGTCGAGTATCACTGGCGGCGCACTCTCATCAGGCTTCTCAGACAAAAATACGACGACCTCAACTTATCCACATCGACCACCCATCACATTCAATAT
TACCGTCAATGGAACTTCTTCTTAGAGCGTCACTATCAGCGCTACTGGAATATTCACTTTGCAAAAAAAACGAAAGTGCTAAAGCAAACGGTGAATTATC
TGGGTCGTTACCTGAAGCGCCCACCGATATCCGCATCGAGGCTGCGTCATTATAGCGGGGGAACGGTAGTCTTTAAGTATCTAGACCATCGAGACGGAAC
CCATAAAACGAAGACGTTGACGCAGGAAGAGATGATATTACGGTACGTGAGTCATATCCCGCAGCACCATTTTAAAATGGTGCGTTACTATGGTTTTCTG
TCCAACAGAAAACGAGGGCGCCTACTTCCTTTGGTGTATTTAGCGTTAGAAAAGAAGAGTCTGGAACAGGCTGAGCCGCTCACGTATGCCAAACAATACA
AAGGTTTTACAGGCAATGACCCGTACCAGTGTGTGCTATGCGGAGGCAGAATGGAATTTACAGGTTTTATGAAAGGTCCGAAAAATGATGAACTATTGGA
TAGTCGTCGAATGAGCATGCGCGAAGCGCGGCGATTAAGCGTAGCTGCGTAGGATAAGTCCGTCTAAATTTAGTAAATGAGTGGAAAAAATACCCAAACT
GCTGGTAAAACGACCTAATTATCTCACTTTCAGCAAACGCTCACGACTCAAACAGGAGATTTACTTCGCCTGCCAAACTTGATGGTTAGGATTGAAATTC
CTAACCAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1248 bp | 415 aa | 105 | 1352 | + | No |
Chemistry : Y2
ORF sequence :
VVQYSGRRRRHHTLKEFVPRATKLLFEKDNAWEKVLWKHAQTFSLWQITCVERMLACGTNMMGAKHYDCGTSNCPHTKVVCQSCKTKACSSCGTKSTEQW
IHTQLDVMPDCEHQHITFTMPSELWPIFEANPTLLNDLFSLAADTLLEWAKKHGLEVGIFGALHTYGRALNWHPHIHLSVTRGGLDKHNTWKPIYFKKKH
VEYHWRRTLIRLLRQKYDDLNLSTSTTHHIQYYRQWNFFLERHYQRYWNIHFAKKTKVLKQTVNYLGRYLKRPPISASRLRHYSGGTVVFKYLDHRDGTH
KTKTLTQEEMILRYVSHIPQHHFKMVRYYGFLSNRKRGRLLPLVYLALEKKSLEQAEPLTYAKQYKGFTGNDPYQCVLCGGRMEFTGFMKGPKNDELLDS
RRMSMREARRLSVAA
IHTQLDVMPDCEHQHITFTMPSELWPIFEANPTLLNDLFSLAADTLLEWAKKHGLEVGIFGALHTYGRALNWHPHIHLSVTRGGLDKHNTWKPIYFKKKH
VEYHWRRTLIRLLRQKYDDLNLSTSTTHHIQYYRQWNFFLERHYQRYWNIHFAKKTKVLKQTVNYLGRYLKRPPISASRLRHYSGGTVVFKYLDHRDGTH
KTKTLTQEEMILRYVSHIPQHHFKMVRYYGFLSNRKRGRLLPLVYLALEKKSLEQAEPLTYAKQYKGFTGNDPYQCVLCGGRMEFTGFMKGPKNDELLDS
RRMSMREARRLSVAA
Blast result :
Comments
ISVa3 is 64% aa similar to ISVsa9.
References
1] K. Olav Holm (2010) Direct submission