ISCaac1
- Family IS5
- Group IS427
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013131 | ND | Catenulispora acidiphila | Catenulispora acidiphila DSM 44928 |
DNA section
IS Length : 996 bp
Ends
IR Length : 20
IRL : GAGCGACCGCCACTTGATGGGGTGCAGCTGGCTGTGGACGGCAAGTGATT
IRR : GAGCGACCGCCACTTGATGGTTTAGGGGAGTCGGCGGCTGGTCGGTCGGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCGACGACAC | TTA | TACGAAGTTC | 3 |
| ACACCTGGTC | TTA | GTCGGGTTTT | 3 |
| CCGGATCGGC | TAA | GGCTGCCAAC | 3 |
DNA sequence
GAGCGACCGCCACTTGATGGGGTGCAGCTGGCTGTGGACGGCAAGTGATTGAGGGGATTGACAGACAGGCACGGATCCCGGTGATCTCGGAGTTCTCTAC
GCTTCGTAACCGCCGGAGGATCCGTGCCTGCAGTCCCATCATCTCTGTTCGATGTGTTGTGGGACCAGTTCGCAGCTCTGCTGCCCGAACGGCCCGAGTT
CGACCCGGCCCATCCGTGGGGATGCCACCGCCGCCGGATACCGGACCTGGTCGTGTTCCGGCACGTCGTGGACGCCCTGGTCCACGGTTCGGGGTACGAG
CGGATCGCCTCGCAAGGGTGCTCCGCGACCACCATCCGCCGCCGCGTCAAGCAATGGGCCCACATAGGCCTGGCACAGGAACTCCACCGGATTGTGCTGG
CCGCCTACGACACGATGATCGGCCTGGACCTCCACGACCTGTCCGCCGACGGCTGCCACACCAAAGCCCCATGCAAAGGCGACAAGGCCGGACCCTCACC
GGTCGACCGCGCCAAGCAGGGCTTGAAACGCTCCACCTTGGTCGACGGCGACGGCGTTCCGCTCGGCCTGGCCTCGGCCGGCGCCAACCGACACGACTCA
AAGCTGCTGGAACCCACCATCGAGGCAGCGAAACAGCAGGTCGGACACCTACCGGACAGAGCCACGATCCACCTGGACTCCGCCTACAACGGCAAACCGT
GCCGCAAGGTCCTCGACGACCACCACCTGATCGGCGAGATAGCCGCCAAGGGGGTGCCGGCTCCGATCCAGGTCGGCAAGCGATGGGTCGTGGAACGCAG
CCAGAGCTGGATGAACGGCTACGGCAAGATCCGCCGCTGTTTCGAACGCGACGGCGAGATCGTCGACTTCTACCTCTACCTCGCCGCCGCGTTCGTCACC
GTCCGTGCACTCATCCGCCGAGCCCGCAAGCGCTACCGCTGGGACACCCGACCGACCAGCCGCCGACTCCCCTAAACCATCAAGTGGCGGTCGCTC
GCTTCGTAACCGCCGGAGGATCCGTGCCTGCAGTCCCATCATCTCTGTTCGATGTGTTGTGGGACCAGTTCGCAGCTCTGCTGCCCGAACGGCCCGAGTT
CGACCCGGCCCATCCGTGGGGATGCCACCGCCGCCGGATACCGGACCTGGTCGTGTTCCGGCACGTCGTGGACGCCCTGGTCCACGGTTCGGGGTACGAG
CGGATCGCCTCGCAAGGGTGCTCCGCGACCACCATCCGCCGCCGCGTCAAGCAATGGGCCCACATAGGCCTGGCACAGGAACTCCACCGGATTGTGCTGG
CCGCCTACGACACGATGATCGGCCTGGACCTCCACGACCTGTCCGCCGACGGCTGCCACACCAAAGCCCCATGCAAAGGCGACAAGGCCGGACCCTCACC
GGTCGACCGCGCCAAGCAGGGCTTGAAACGCTCCACCTTGGTCGACGGCGACGGCGTTCCGCTCGGCCTGGCCTCGGCCGGCGCCAACCGACACGACTCA
AAGCTGCTGGAACCCACCATCGAGGCAGCGAAACAGCAGGTCGGACACCTACCGGACAGAGCCACGATCCACCTGGACTCCGCCTACAACGGCAAACCGT
GCCGCAAGGTCCTCGACGACCACCACCTGATCGGCGAGATAGCCGCCAAGGGGGTGCCGGCTCCGATCCAGGTCGGCAAGCGATGGGTCGTGGAACGCAG
CCAGAGCTGGATGAACGGCTACGGCAAGATCCGCCGCTGTTTCGAACGCGACGGCGAGATCGTCGACTTCTACCTCTACCTCGCCGCCGCGTTCGTCACC
GTCCGTGCACTCATCCGCCGAGCCCGCAAGCGCTACCGCTGGGACACCCGACCGACCAGCCGCCGACTCCCCTAAACCATCAAGTGGCGGTCGCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 852 bp | 283 aa | 124 | 975 | + | No |
Chemistry : DDE
ORF sequence :
MPAVPSSLFDVLWDQFAALLPERPEFDPAHPWGCHRRRIPDLVVFRHVVDALVHGSGYERIASQGCSATTIRRRVKQWAHIGLAQELHRIVLAAYDTMIG
LDLHDLSADGCHTKAPCKGDKAGPSPVDRAKQGLKRSTLVDGDGVPLGLASAGANRHDSKLLEPTIEAAKQQVGHLPDRATIHLDSAYNGKPCRKVLDDH
HLIGEIAAKGVPAPIQVGKRWVVERSQSWMNGYGKIRRCFERDGEIVDFYLYLAAAFVTVRALIRRARKRYRWDTRPTSRRLP
LDLHDLSADGCHTKAPCKGDKAGPSPVDRAKQGLKRSTLVDGDGVPLGLASAGANRHDSKLLEPTIEAAKQQVGHLPDRATIHLDSAYNGKPCRKVLDDH
HLIGEIAAKGVPAPIQVGKRWVVERSQSWMNGYGKIRRCFERDGEIVDFYLYLAAAFVTVRALIRRARKRYRWDTRPTSRRLP
Blast result :
Comments
ISCaac1 is 73% aa similar to ISStro1.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. (2009) Direct submission GenBank.