ISStau10
- Family IS5
- Group IS427
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_014623 | ND | Stigmatella aurantiaca | Stigmatella aurantiaca DW4/3-1 |
DNA section
IS Length : 932 bp
Ends
IR Length : 18
IRL : GAGCGCGTGGAAAAATTAACCCGGATTCTGTCAGCGTCGTGACGGTCGTT
IRR : GAGCGCGTGGAAAAATTACGACTCCAGCAGGCGCTCGTAGATGAGGCAGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GAGGATCCAG | TAA | GAGACTATCT | 3 |
| GCACTCCGGA | TAA | GGCACCTCTT | 3 |
| AGACCTGTAA | TATGGAGCGG | 0 | |
| CGCGGAACAC | TGA | GGGAGGGCCT | 3 |
| AGCACCCTTA | TAAGCGGCCCGGTA | 0 | |
| TAACGCCTAT | TTA | GAGACGCAGC | 3 |
| AAAAAAGCGC | TTA | GTTGGTCCCG | 3 |
DNA sequence
GAGCGCGTGGAAAAATTAACCCGGATTCTGTCAGCGTCGTGACGGTCGTTGGGGGTTGATGTCGCAGTGCATAGGTGTGAGTCCGCCCGAGAGAGGGAGG
GACTTCCATGGCTGAACCCTGGGTGTCAGATGAACTGTGGCGAAAACTCGAACCGCTGCTGCCGAAGCCTCGAAGAAAGGATCGCCACGTGCAATTCGCT
GGGCGCAAGAGGACCGACCCTCGTCGGATCTTCAGCGGCATCGTGTTCGTGTTGCGAACAGGCGTTCCCTGGCGCGCATTGCCTGCCACCGGTGCTTTTC
CCTCGGGTTATACTTGCCGTCTCTGGTTGTTGAGGTGGCATCGGGCGGGTGTTTGGAAGCGATTGAGCCAACTTCTCTTGGCGGAACTGAGAAGCAAGGG
GCGACTCCATTGGACGCATGCAGTTGTTGATAGCAGTTTCGTACGCGCCCCCAGCGGAGGCCGAAAAACCGGCCCCAGCCCCGTTGACCGAAGAAAGCTT
GGCACCAAGCATCACGTTATCACCGATGCCATGGGGACACCCCTTGCCGTGACTCTCACCGGGGCAAACAGGAATGACATCACCCAACTTCTCCCCTTGG
TGGATGAGCTTCCCCGTGTCCGCGGAAAGCGGGGCAGCCCCAAACAGAAGCCGCAGAAACTCTACGCAGATCGGGGCTATGATTCCGACTCCCACCGACT
GCAGTTGAAGAAACGGCATATTGAGCCCTATATCGCCCGGCGACGAACTGCTCATGGAAGTGGTTTGGGCAGGAAACGCTCAGTCGTTGAACGCACGCTC
TCTTGGCTCCATCAGTTCCGAAAGCTGGAGATCCGGGAGGAGCACTCGGTTGCAACCTACAAGGCTCTTGCTGACCTGGCTCTCTGCCTCATCTACGAGC
GCCTGCTGGAGTCGTAATTTTTCCACGCGCTC
GACTTCCATGGCTGAACCCTGGGTGTCAGATGAACTGTGGCGAAAACTCGAACCGCTGCTGCCGAAGCCTCGAAGAAAGGATCGCCACGTGCAATTCGCT
GGGCGCAAGAGGACCGACCCTCGTCGGATCTTCAGCGGCATCGTGTTCGTGTTGCGAACAGGCGTTCCCTGGCGCGCATTGCCTGCCACCGGTGCTTTTC
CCTCGGGTTATACTTGCCGTCTCTGGTTGTTGAGGTGGCATCGGGCGGGTGTTTGGAAGCGATTGAGCCAACTTCTCTTGGCGGAACTGAGAAGCAAGGG
GCGACTCCATTGGACGCATGCAGTTGTTGATAGCAGTTTCGTACGCGCCCCCAGCGGAGGCCGAAAAACCGGCCCCAGCCCCGTTGACCGAAGAAAGCTT
GGCACCAAGCATCACGTTATCACCGATGCCATGGGGACACCCCTTGCCGTGACTCTCACCGGGGCAAACAGGAATGACATCACCCAACTTCTCCCCTTGG
TGGATGAGCTTCCCCGTGTCCGCGGAAAGCGGGGCAGCCCCAAACAGAAGCCGCAGAAACTCTACGCAGATCGGGGCTATGATTCCGACTCCCACCGACT
GCAGTTGAAGAAACGGCATATTGAGCCCTATATCGCCCGGCGACGAACTGCTCATGGAAGTGGTTTGGGCAGGAAACGCTCAGTCGTTGAACGCACGCTC
TCTTGGCTCCATCAGTTCCGAAAGCTGGAGATCCGGGAGGAGCACTCGGTTGCAACCTACAAGGCTCTTGCTGACCTGGCTCTCTGCCTCATCTACGAGC
GCCTGCTGGAGTCGTAATTTTTCCACGCGCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 810 bp | 269 aa | 108 | 917 | + | No |
Chemistry : DDE
ORF sequence :
MAEPWVSDELWRKLEPLLPKPRRKDRHVQFAGRKRTDPRRIFSGIVFVLRTGVPWRALPATGAFPSGYTCRLWLLRWHRAGVWKRLSQLLLAELRSKGRL
HWTHAVVDSSFVRAPSGGRKTGPSPVDRRKLGTKHHVITDAMGTPLAVTLTGANRNDITQLLPLVDELPRVRGKRGSPKQKPQKLYADRGYDSDSHRLQL
KKRHIEPYIARRRTAHGSGLGRKRSVVERTLSWLHQFRKLEIREEHSVATYKALADLALCLIYERLLES
HWTHAVVDSSFVRAPSGGRKTGPSPVDRRKLGTKHHVITDAMGTPLAVTLTGANRNDITQLLPLVDELPRVRGKRGSPKQKPQKLYADRGYDSDSHRLQL
KKRHIEPYIARRRTAHGSGLGRKRSVVERTLSWLHQFRKLEIREEHSVATYKALADLALCLIYERLLES
Blast result :
Comments
ISStau10 is 64% aa similar to ISBugl2.
References
1] ISfinder annotation (2010)
2] Huntley,S., Hamann,N., Wegener-Feldbruegge,S., Treuner-Lange,A., Kube,M., Reinhardt,R., Klages,S., Mueller,R., Ronning,C.M., Nierman,W.C. and Sogaard-Andersen,L. (2010) Direct submission GenBank.
2] Huntley,S., Hamann,N., Wegener-Feldbruegge,S., Treuner-Lange,A., Kube,M., Reinhardt,R., Klages,S., Mueller,R., Ronning,C.M., Nierman,W.C. and Sogaard-Andersen,L. (2010) Direct submission GenBank.