ISA1218
- Family IS5
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_000917 | ND | Archaeoglobus fulgidus | Archaeoglobus fulgidus DSM 4304 |
DNA section
IS Length : 1218 bp
Ends
IR Length : 15/26
IRL : GGGTGTTCCTTCAACCCCTAACCCAATCTCCTTCCATTTACCTCTGTAAA
IRR : GGTCTTCTCTATATCACCACTCCGACAATCTCTGAATTACCTTCTTTTCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAAGGTAAAG | TTATA | TGTTTTGATT | 5 |
DNA sequence
GGGTGTTCCTTCAACCCCTAACCCAATCTCCTTCCATTTACCTCTGTAAAGCGAACAACGAGCTCTTCCACCTTCCCCTTCAACAGGACAAAACTACACA
ACCCTAAATCAAAAACAAAACCACCAAAATTCGAAAAATTAATCAATCTAACCGAATCATCCTTTTTCAGGTGATTCAAGTGAAACTACCAGTAATTCCT
GCCAGAGGAGACGAGAAATGGGAGCTCCTATCTCAAATCGTAAGCAAGCTTGAATCAAGAGAAGCAAAGAAATCGCTGGCGAGAAATGGAATATCTCCAG
TCAATAAAGCCGTAGAGTACCTCAAAGTAATGGCTATGTTCTTCGAACTGGAGATTTCCTATGCTGTAAGCGAATTGAATAAGCGGTCAGAACTGAGAAA
GTTCTTGAGGCTAGGAGAGGAAATAAAACTGAGATCTATCTACAGCTTCATGTCGAAATTTGAGGCTGAGCAGTTTATAAGCTTAGTTTTCTCCATCCTA
AACGTTAACGCAAAGAGAAGTAGAAAGAAATCATCAATTTTAATATTGGATTGGACAGATATATCACTCGACCTAAATCCCTTCAGGAGGAGAGAATTGA
GTAATAAGCCATACAAATGGGGTTATTCAACCAAGGGATTCTTTCTCGGCATGAAGATGATGATTTTAATCGACTACAATACTTTAACGCCTCTTTTCTT
CCACATTTACCCTGCTAACACTCACGAGAGCAGAATCTATCCGGTAATTCTGGAAATGCTCAAGAGGAGGAAGCTAATCAGGTTTGGAGACTCTATCATC
ATGGACAGAGGTTTCTACGCCTACAAAAACTATCTGATTGGACTGAGATACGGGATCATTCCCCTAATTATCCCAAGAAAGAATTTCAGAGAAGAGAGGC
TTAAAGGGATGGTTAGCTATCCTCTGAGCATATTTGCCTCTAAGAACGTTGAGAAGGAGAAAAAGAGATACAGGAAGCTTGTAAGAAAATTGTTTGAAGG
GTTGAAGCAAAATCTTAAGACTTTGAGGAGTATAATTGAAGACGTGATAAAGCTGGGGAAAGAAGCTTTCAGTTTGAGGGATTTGCACTGCTATACGGTC
GATTCTGTGAGAAAGAAGTGTGCTCTTTCTGTCCTGTTAGTGGGGATGACGGTTAAGCTGGGTTTTAGGGAAAAGAAGGTAATTCAGAGATTGTCGGAGT
GGTGATATAGAGAAGACC
ACCCTAAATCAAAAACAAAACCACCAAAATTCGAAAAATTAATCAATCTAACCGAATCATCCTTTTTCAGGTGATTCAAGTGAAACTACCAGTAATTCCT
GCCAGAGGAGACGAGAAATGGGAGCTCCTATCTCAAATCGTAAGCAAGCTTGAATCAAGAGAAGCAAAGAAATCGCTGGCGAGAAATGGAATATCTCCAG
TCAATAAAGCCGTAGAGTACCTCAAAGTAATGGCTATGTTCTTCGAACTGGAGATTTCCTATGCTGTAAGCGAATTGAATAAGCGGTCAGAACTGAGAAA
GTTCTTGAGGCTAGGAGAGGAAATAAAACTGAGATCTATCTACAGCTTCATGTCGAAATTTGAGGCTGAGCAGTTTATAAGCTTAGTTTTCTCCATCCTA
AACGTTAACGCAAAGAGAAGTAGAAAGAAATCATCAATTTTAATATTGGATTGGACAGATATATCACTCGACCTAAATCCCTTCAGGAGGAGAGAATTGA
GTAATAAGCCATACAAATGGGGTTATTCAACCAAGGGATTCTTTCTCGGCATGAAGATGATGATTTTAATCGACTACAATACTTTAACGCCTCTTTTCTT
CCACATTTACCCTGCTAACACTCACGAGAGCAGAATCTATCCGGTAATTCTGGAAATGCTCAAGAGGAGGAAGCTAATCAGGTTTGGAGACTCTATCATC
ATGGACAGAGGTTTCTACGCCTACAAAAACTATCTGATTGGACTGAGATACGGGATCATTCCCCTAATTATCCCAAGAAAGAATTTCAGAGAAGAGAGGC
TTAAAGGGATGGTTAGCTATCCTCTGAGCATATTTGCCTCTAAGAACGTTGAGAAGGAGAAAAAGAGATACAGGAAGCTTGTAAGAAAATTGTTTGAAGG
GTTGAAGCAAAATCTTAAGACTTTGAGGAGTATAATTGAAGACGTGATAAAGCTGGGGAAAGAAGCTTTCAGTTTGAGGGATTTGCACTGCTATACGGTC
GATTCTGTGAGAAAGAAGTGTGCTCTTTCTGTCCTGTTAGTGGGGATGACGGTTAAGCTGGGTTTTAGGGAAAAGAAGGTAATTCAGAGATTGTCGGAGT
GGTGATATAGAGAAGACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1035 bp | 344 aa | 171 | 1205 | + | No |
Chemistry : DDE
ORF sequence :
MIQVKLPVIPARGDEKWELLSQIVSKLESREAKKSLARNGISPVNKAVEYLKVMAMFFELEISYAVSELNKRSELRKFLRLGEEIKLRSIYSFMSKFEAE
QFISLVFSILNVNAKRSRKKSSILILDWTDISLDLNPFRRRELSNKPYKWGYSTKGFFLGMKMMILIDYNTLTPLFFHIYPANTHESRIYPVILEMLKRR
KLIRFGDSIIMDRGFYAYKNYLIGLRYGIIPLIIPRKNFREERLKGMVSYPLSIFASKNVEKEKKRYRKLVRKLFEGLKQNLKTLRSIIEDVIKLGKEAF
SLRDLHCYTVDSVRKKCALSVLLVGMTVKLGFREKKVIQRLSEW
QFISLVFSILNVNAKRSRKKSSILILDWTDISLDLNPFRRRELSNKPYKWGYSTKGFFLGMKMMILIDYNTLTPLFFHIYPANTHESRIYPVILEMLKRR
KLIRFGDSIIMDRGFYAYKNYLIGLRYGIIPLIIPRKNFREERLKGMVSYPLSIFASKNVEKEKKRYRKLVRKLFEGLKQNLKTLRSIIEDVIKLGKEAF
SLRDLHCYTVDSVRKKCALSVLLVGMTVKLGFREKKVIQRLSEW
Blast result :
Comments
ISA1218 is 66% aa similar to ISMba15.
References
1] ISfinder annotation (2010)
2] Klenk,H.P., Clayton,R.A., Tomb,J.-F., White,O., Nelson,K.E., Ketchum,K.A., Dodson,R.J., Gwinn,M., Hickey,E.K., Peterson,J.D., Richardson,D.L., Kerlavage,A.R., Graham,D.E., Kyrpides,N.C., Fleischmann,R.D., Quackenbush,J., Lee,N.H., Sutton,G.G., Gill,S., Kirkness,E.F., Dougherty,B.A., McKenney,K., Adams,M.D., Loftus,B., Peterson,S., Reich,C.I., McNeil,L.K., Badger,J.H., Glodek,A., Zhou,L., Overbeek,R., Gocayne,J.D., Weidman,J.F., McDonald,L., Utterback,T., Cotton,M.D., Spriggs,T., Artiach,P., Kaine,B.P., Sykes,S.M., Sadow,P.W., D'Andrea,K.P., Bowman,C., Fujii,C., Garland,S.A., Mason,T.M., Olsen,G.J., Fraser,C.M., Smith,H.O., Woese,C.R. and Venter,J.C. (1997) Nature 390 (6658), 364-370.
2] Klenk,H.P., Clayton,R.A., Tomb,J.-F., White,O., Nelson,K.E., Ketchum,K.A., Dodson,R.J., Gwinn,M., Hickey,E.K., Peterson,J.D., Richardson,D.L., Kerlavage,A.R., Graham,D.E., Kyrpides,N.C., Fleischmann,R.D., Quackenbush,J., Lee,N.H., Sutton,G.G., Gill,S., Kirkness,E.F., Dougherty,B.A., McKenney,K., Adams,M.D., Loftus,B., Peterson,S., Reich,C.I., McNeil,L.K., Badger,J.H., Glodek,A., Zhou,L., Overbeek,R., Gocayne,J.D., Weidman,J.F., McDonald,L., Utterback,T., Cotton,M.D., Spriggs,T., Artiach,P., Kaine,B.P., Sykes,S.M., Sadow,P.W., D'Andrea,K.P., Bowman,C., Fujii,C., Garland,S.A., Mason,T.M., Olsen,G.J., Fraser,C.M., Smith,H.O., Woese,C.R. and Venter,J.C. (1997) Nature 390 (6658), 364-370.