ISVbsp3
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ACZT01000006 | ND | Vibrio sp. | Vibrio sp. RC341 |
DNA section
IS Length : 1054 bp
Ends
IR Length : 17/18
IRL : GGCTTTGTTTCCTAAATCAGGGAACTAAATCAGTAACCCACGATCTGATC
IRR : GGCTTTGTTTCCTAATTCGATTTCAGTTAAAAACACGCCTAACATGACTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTATTTGTT | CGTTTTAGG | TAGATAAATA | 9 |
AGCTATCCGC | ACATCACTTA | 0 |
DNA sequence
GGCTTTGTTTCCTAAATCAGGGAACTAAATCAGTAACCCACGATCTGATCAGCTAAGTTCCACTCAAACACTTTGACCAATGGCCAAGCCTCGCTACAAG
ACAACCAATTGGAAGCACTATAACCAAGCTTTAATTAATCGCGGCTCACTGACATTTTGGATAGATGAAGAAGCCATCCAGCTATGGAAGCAAATCAAAC
AGGGAAACCGCGGGAGACCTCGCTTGTTTAGCGACTTAGCCATTACGACAGCTCTTATGGTTAAACGCGTATTTTCAATGCCGTTGAGAGGTCTTCAAGG
GTTCATTAACTCTATTTTTAAGCTCGCTGAACTGCCATTGTCATGCCCTCATTATTCATGCATTAGCAAGCGAGCTAAAACAGTTAACGTCGCGTTCAAG
ACAAAAACCAAAGGAACCATCCAGCATCTAGCCATTGATTCAACAGGTCTCAAGGTTTATGGCGAAGGTGAATGGAAGGTCAAGAAGCATGGTACTGACG
GGAAGCGTAGAGTCTGGAGAAAGTTGCATTTAGCGGTAGACACCAGCACTCACGAAATCGTCGCGGCAGAACTGAGTTTATCTAATGTTACCGATGCAGA
AGTCCTTCCTAATTTGCTCAAGCAAACACGCCGAAGAATTATCGAAATATCTGGTGATGGTGCTTATGACACAAGGGATTGCTACGAAGCCATACGGTTC
AAGCGAGCTGTACCACTCATCCCTCCTAGAGAAGGGGCTGCCTTCTGGGAGAGTGGCCACCCTAGGAATTTAGCGGTAGGTTGCCAAAAGCTCTACGGGT
CCAACAATCAGTGGAAAAAGCGGTACGGCTATCATAAACGCTCACTGTCAGAGACAGCAATGTATCGAGTGAAGCAGTTGTTCGGTGGGCGATTAAGTCT
GAGAACCTACAATGCTCAGGTTGGTGAAACTTACGCCATGATAAAAGCGTTAAACAAGCTCACAGGACTAGGTATGCCTGAAACGACGGTGATCGCCTAA
CAATTAGTCATGTTAGGCGTGTTTTTAACTGAAATCGAATTAGGAAACAAAGCC
ACAACCAATTGGAAGCACTATAACCAAGCTTTAATTAATCGCGGCTCACTGACATTTTGGATAGATGAAGAAGCCATCCAGCTATGGAAGCAAATCAAAC
AGGGAAACCGCGGGAGACCTCGCTTGTTTAGCGACTTAGCCATTACGACAGCTCTTATGGTTAAACGCGTATTTTCAATGCCGTTGAGAGGTCTTCAAGG
GTTCATTAACTCTATTTTTAAGCTCGCTGAACTGCCATTGTCATGCCCTCATTATTCATGCATTAGCAAGCGAGCTAAAACAGTTAACGTCGCGTTCAAG
ACAAAAACCAAAGGAACCATCCAGCATCTAGCCATTGATTCAACAGGTCTCAAGGTTTATGGCGAAGGTGAATGGAAGGTCAAGAAGCATGGTACTGACG
GGAAGCGTAGAGTCTGGAGAAAGTTGCATTTAGCGGTAGACACCAGCACTCACGAAATCGTCGCGGCAGAACTGAGTTTATCTAATGTTACCGATGCAGA
AGTCCTTCCTAATTTGCTCAAGCAAACACGCCGAAGAATTATCGAAATATCTGGTGATGGTGCTTATGACACAAGGGATTGCTACGAAGCCATACGGTTC
AAGCGAGCTGTACCACTCATCCCTCCTAGAGAAGGGGCTGCCTTCTGGGAGAGTGGCCACCCTAGGAATTTAGCGGTAGGTTGCCAAAAGCTCTACGGGT
CCAACAATCAGTGGAAAAAGCGGTACGGCTATCATAAACGCTCACTGTCAGAGACAGCAATGTATCGAGTGAAGCAGTTGTTCGGTGGGCGATTAAGTCT
GAGAACCTACAATGCTCAGGTTGGTGAAACTTACGCCATGATAAAAGCGTTAAACAAGCTCACAGGACTAGGTATGCCTGAAACGACGGTGATCGCCTAA
CAATTAGTCATGTTAGGCGTGTTTTTAACTGAAATCGAATTAGGAAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
921 bp | 306 aa | 80 | 1000 | + | No |
Chemistry : DDE
ORF sequence :
MAKPRYKTTNWKHYNQALINRGSLTFWIDEEAIQLWKQIKQGNRGRPRLFSDLAITTALMVKRVFSMPLRGLQGFINSIFKLAELPLSCPHYSCISKRAK
TVNVAFKTKTKGTIQHLAIDSTGLKVYGEGEWKVKKHGTDGKRRVWRKLHLAVDTSTHEIVAAELSLSNVTDAEVLPNLLKQTRRRIIEISGDGAYDTRD
CYEAIRFKRAVPLIPPREGAAFWESGHPRNLAVGCQKLYGSNNQWKKRYGYHKRSLSETAMYRVKQLFGGRLSLRTYNAQVGETYAMIKALNKLTGLGMP
ETTVIA
TVNVAFKTKTKGTIQHLAIDSTGLKVYGEGEWKVKKHGTDGKRRVWRKLHLAVDTSTHEIVAAELSLSNVTDAEVLPNLLKQTRRRIIEISGDGAYDTRD
CYEAIRFKRAVPLIPPREGAAFWESGHPRNLAVGCQKLYGSNNQWKKRYGYHKRSLSETAMYRVKQLFGGRLSLRTYNAQVGETYAMIKALNKLTGLGMP
ETTVIA
Blast result :
Comments
ISVbsp3 is 93% aa similar to ISVpa3.
References
1] ISfinder annotation (2010)
2] Munk,A.C., Tapia,R., Green,L., Rogers,Y., Detter,J.C., Bruce,D.,
Brettin,T.S., Colwell,R., Huq,A., Grim,C.J., Hasan,N.A., Bartels,D. and Vonstein,V. (2009) Direct submission GenBank.
2] Munk,A.C., Tapia,R., Green,L., Rogers,Y., Detter,J.C., Bruce,D.,
Brettin,T.S., Colwell,R., Huq,A., Grim,C.J., Hasan,N.A., Bartels,D. and Vonstein,V. (2009) Direct submission GenBank.