ISVbsp3

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ACZT01000006 ND Vibrio sp.
Vibrio sp. RC341
DNA section
IS Length : 1054 bp

Ends


IR Length : 17/18

IRL : GGCTTTGTTTCCTAAATCAGGGAACTAAATCAGTAACCCACGATCTGATC
IRR : GGCTTTGTTTCCTAATTCGATTTCAGTTAAAAACACGCCTAACATGACTA

Insertion site


Left flankDirect repeatRight flankDR Length
CTTATTTGTTCGTTTTAGGTAGATAAATA9
AGCTATCCGCACATCACTTA0

DNA sequence

GGCTTTGTTTCCTAAATCAGGGAACTAAATCAGTAACCCACGATCTGATCAGCTAAGTTCCACTCAAACACTTTGACCAATGGCCAAGCCTCGCTACAAG
ACAACCAATTGGAAGCACTATAACCAAGCTTTAATTAATCGCGGCTCACTGACATTTTGGATAGATGAAGAAGCCATCCAGCTATGGAAGCAAATCAAAC
AGGGAAACCGCGGGAGACCTCGCTTGTTTAGCGACTTAGCCATTACGACAGCTCTTATGGTTAAACGCGTATTTTCAATGCCGTTGAGAGGTCTTCAAGG
GTTCATTAACTCTATTTTTAAGCTCGCTGAACTGCCATTGTCATGCCCTCATTATTCATGCATTAGCAAGCGAGCTAAAACAGTTAACGTCGCGTTCAAG
ACAAAAACCAAAGGAACCATCCAGCATCTAGCCATTGATTCAACAGGTCTCAAGGTTTATGGCGAAGGTGAATGGAAGGTCAAGAAGCATGGTACTGACG
GGAAGCGTAGAGTCTGGAGAAAGTTGCATTTAGCGGTAGACACCAGCACTCACGAAATCGTCGCGGCAGAACTGAGTTTATCTAATGTTACCGATGCAGA
AGTCCTTCCTAATTTGCTCAAGCAAACACGCCGAAGAATTATCGAAATATCTGGTGATGGTGCTTATGACACAAGGGATTGCTACGAAGCCATACGGTTC
AAGCGAGCTGTACCACTCATCCCTCCTAGAGAAGGGGCTGCCTTCTGGGAGAGTGGCCACCCTAGGAATTTAGCGGTAGGTTGCCAAAAGCTCTACGGGT
CCAACAATCAGTGGAAAAAGCGGTACGGCTATCATAAACGCTCACTGTCAGAGACAGCAATGTATCGAGTGAAGCAGTTGTTCGGTGGGCGATTAAGTCT
GAGAACCTACAATGCTCAGGTTGGTGAAACTTACGCCATGATAAAAGCGTTAAACAAGCTCACAGGACTAGGTATGCCTGAAACGACGGTGATCGCCTAA
CAATTAGTCATGTTAGGCGTGTTTTTAACTGAAATCGAATTAGGAAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
921 bp306 aa801000+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKPRYKTTNWKHYNQALINRGSLTFWIDEEAIQLWKQIKQGNRGRPRLFSDLAITTALMVKRVFSMPLRGLQGFINSIFKLAELPLSCPHYSCISKRAK
TVNVAFKTKTKGTIQHLAIDSTGLKVYGEGEWKVKKHGTDGKRRVWRKLHLAVDTSTHEIVAAELSLSNVTDAEVLPNLLKQTRRRIIEISGDGAYDTRD
CYEAIRFKRAVPLIPPREGAAFWESGHPRNLAVGCQKLYGSNNQWKKRYGYHKRSLSETAMYRVKQLFGGRLSLRTYNAQVGETYAMIKALNKLTGLGMP
ETTVIA

 

Blast result :
Comments
ISVbsp3 is 93% aa similar to ISVpa3.
References
1] ISfinder annotation (2010)
2] Munk,A.C., Tapia,R., Green,L., Rogers,Y., Detter,J.C., Bruce,D.,
Brettin,T.S., Colwell,R., Huq,A., Grim,C.J., Hasan,N.A., Bartels,D. and Vonstein,V. (2009) Direct submission GenBank.