ISAra1
- Family IS5
- Group IS903
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011983 | ND | Agrobacterium radiobacter | Agrobacterium radiobacter K84 chromosome 2 |
DNA section
IS Length : 1116 bp
Ends
IR Length : 11/13
IRL : GGTGCAGGGATCAAATTTCAACATTTTGCATCTATGCGGCCGGGATCGAA
IRR : GGTGCAGCGTTCATCGACAGGTTATCATTCGGTCTTTGATGGGCGGCTTA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGATGGAATT | AACGCCGACT | 0 |
DNA sequence
GGTGCAGGGATCAAATTTCAACATTTTGCATCTATGCGGCCGGGATCGAAAATAGCTCGATTGATCCCGGATGCCGCACAAACATAACGCCGCCCGCCGC
CATCACGTCGGTAAAATGAAGTTCAAAGTGACGAACTGGTCGGAGTATGAGGCGGGCCTTCGCCGCCGTGGCAGTTTAACCCTTTGGATAACACCGGAGG
CGCTGGCAGGCTGGGTCGCTCCGCGGCGCAAGACGCGCGGTGGCCAGCCTCTCTATTCGGATCTGGCGATCGAAACCACACTGATGCTGGGCATCGTCTT
TGGGCTGCGTTTGCGCCAGAGCGAAGGGCTTTTGAGTTCGGTGCTTGCCATGATGGGATTGGACTTGCCTGTGCCCGATCACACCACACTGAGCCGACGG
GCCAGAACCTGGAAATCGTCGGCCGGAGGCGGCGACCGGCAGCACGTGGCGGAAGGCCCCGTTCATATTCTGGTCGATAGTACTGGGCTCAAGGTCTACG
GCGCGGGCCAATGGCTGGAGGAGAAGCATGGCGTAAAGTCCCGGCGTAGCTGGCGAAAGCTGCACCTGGCTGTTGATGCCGACAGTGGCGAGATTATTGC
CCATAGCCCAACAGATCAGGAAGCCGGCGATGCCACGCAGCTGGGGTCGTTGCTGGATCAGATCGACGACGAGATTGATCAATTCACTGCCGATGGAGCC
TATGACGGCGATCCATCCTACGACGCTGTCCTGCGTCACAGCCCAGGCGCAAGGGTCGTCATTCCACCACGCTCGAACGCGGTTGAAAGGCCCAACGCCC
AAGCGTCCTGCCAGAGAGACGATCACACAGCATCCATGCAGATCGATGGTCGGTTGAAATGGCAGACGCCCATCGGCTATAGCAAACGGGCTTTGGCTGA
AACCGCGATGGGTCGATACAAGGGCGTCATCGGTCCGCAGCTACGTGCTCGTTCATTCCGTGCGCAGCAGACTGAAGCTGCGATAAGCGTCGCCATCCTT
AACCGAATGCTTGCTTGCGGACGCCCTAAATCCGTTCGTTGCCGAGCCTTGACGGGAAAAGCCAAATAAGCCGCCCATCAAAGACCGAATGATAACCTGT
CGATGAACGCTGCACC
CATCACGTCGGTAAAATGAAGTTCAAAGTGACGAACTGGTCGGAGTATGAGGCGGGCCTTCGCCGCCGTGGCAGTTTAACCCTTTGGATAACACCGGAGG
CGCTGGCAGGCTGGGTCGCTCCGCGGCGCAAGACGCGCGGTGGCCAGCCTCTCTATTCGGATCTGGCGATCGAAACCACACTGATGCTGGGCATCGTCTT
TGGGCTGCGTTTGCGCCAGAGCGAAGGGCTTTTGAGTTCGGTGCTTGCCATGATGGGATTGGACTTGCCTGTGCCCGATCACACCACACTGAGCCGACGG
GCCAGAACCTGGAAATCGTCGGCCGGAGGCGGCGACCGGCAGCACGTGGCGGAAGGCCCCGTTCATATTCTGGTCGATAGTACTGGGCTCAAGGTCTACG
GCGCGGGCCAATGGCTGGAGGAGAAGCATGGCGTAAAGTCCCGGCGTAGCTGGCGAAAGCTGCACCTGGCTGTTGATGCCGACAGTGGCGAGATTATTGC
CCATAGCCCAACAGATCAGGAAGCCGGCGATGCCACGCAGCTGGGGTCGTTGCTGGATCAGATCGACGACGAGATTGATCAATTCACTGCCGATGGAGCC
TATGACGGCGATCCATCCTACGACGCTGTCCTGCGTCACAGCCCAGGCGCAAGGGTCGTCATTCCACCACGCTCGAACGCGGTTGAAAGGCCCAACGCCC
AAGCGTCCTGCCAGAGAGACGATCACACAGCATCCATGCAGATCGATGGTCGGTTGAAATGGCAGACGCCCATCGGCTATAGCAAACGGGCTTTGGCTGA
AACCGCGATGGGTCGATACAAGGGCGTCATCGGTCCGCAGCTACGTGCTCGTTCATTCCGTGCGCAGCAGACTGAAGCTGCGATAAGCGTCGCCATCCTT
AACCGAATGCTTGCTTGCGGACGCCCTAAATCCGTTCGTTGCCGAGCCTTGACGGGAAAAGCCAAATAAGCCGCCCATCAAAGACCGAATGATAACCTGT
CGATGAACGCTGCACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 999 bp | 332 aa | 71 | 1069 | + | No |
Chemistry : DDE
ORF sequence :
MPHKHNAARRHHVGKMKFKVTNWSEYEAGLRRRGSLTLWITPEALAGWVAPRRKTRGGQPLYSDLAIETTLMLGIVFGLRLRQSEGLLSSVLAMMGLDLP
VPDHTTLSRRARTWKSSAGGGDRQHVAEGPVHILVDSTGLKVYGAGQWLEEKHGVKSRRSWRKLHLAVDADSGEIIAHSPTDQEAGDATQLGSLLDQIDD
EIDQFTADGAYDGDPSYDAVLRHSPGARVVIPPRSNAVERPNAQASCQRDDHTASMQIDGRLKWQTPIGYSKRALAETAMGRYKGVIGPQLRARSFRAQQ
TEAAISVAILNRMLACGRPKSVRCRALTGKAK
VPDHTTLSRRARTWKSSAGGGDRQHVAEGPVHILVDSTGLKVYGAGQWLEEKHGVKSRRSWRKLHLAVDADSGEIIAHSPTDQEAGDATQLGSLLDQIDD
EIDQFTADGAYDGDPSYDAVLRHSPGARVVIPPRSNAVERPNAQASCQRDDHTASMQIDGRLKWQTPIGYSKRALAETAMGRYKGVIGPQLRARSFRAQQ
TEAAISVAILNRMLACGRPKSVRCRALTGKAK
Blast result :
Comments
ISAra1 is 66% aa similar to ISAzba3.
References
1] ISfinder annotation (2010)
2] Slater,S.C., Goldman,B.S., Goodner,B., Setubal,J.C., Farrand,S.K., Nester,E.W., Burr,T.J., Banta,L., Dickerman,A.W., Paulsen,I., Otten,L., Suen,G., Welch,R., Almeida,N.F., Arnold,F., Burton,O.T., Du,Z., Ewing,A., Godsy,E., Heisel,S., Houmiel,K.L., Jhaveri,J., Lu,J., Miller,N.M., Norton,S., Chen,Q., Phoolcharoen,W., Ohlin,V., Ondrusek,D., Pride,N., Stricklin,S.L., Sun,J., Wheeler,C., Wilson,L., Zhu,H. and Wood,D.W. (2009) J. Bacteriol. 191 (8), 2501-2511.
2] Slater,S.C., Goldman,B.S., Goodner,B., Setubal,J.C., Farrand,S.K., Nester,E.W., Burr,T.J., Banta,L., Dickerman,A.W., Paulsen,I., Otten,L., Suen,G., Welch,R., Almeida,N.F., Arnold,F., Burton,O.T., Du,Z., Ewing,A., Godsy,E., Heisel,S., Houmiel,K.L., Jhaveri,J., Lu,J., Miller,N.M., Norton,S., Chen,Q., Phoolcharoen,W., Ohlin,V., Ondrusek,D., Pride,N., Stricklin,S.L., Sun,J., Wheeler,C., Wilson,L., Zhu,H. and Wood,D.W. (2009) J. Bacteriol. 191 (8), 2501-2511.