ISOcan1
- Family IS5
- Group IS903
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009671 | ND | Ochrobactrum anthropi | Ochrobactrum anthropi ATCC 49188 plasmid pOANT03 |
DNA section
IS Length : 1135 bp
Ends
IR Length : 16/19
IRL : GGCGTTGGTGCATCAATCGCCGGTGAGTTTCAGAGTTTTTATAGCATTGG
IRR : GGCGTTGTTGCATGAAACGAATTGGTGGCGGATTCCGATCTTTGATGCTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAGTCACCTACAGC | GCTATGCGGCC | 0 |
DNA sequence
GGCGTTGGTGCATCAATCGCCGGTGAGTTTCAGAGTTTTTATAGCATTGGCTTTTAATGTTTTGGTTCGTTGAGAATTTGGATCAAGCCAATGCCTTTCA
AGCACAATTCCGCCCGTCGTCACCGGATACCCAAGCAGAAGTTCAAGGTCACGAACTGGGCGGAGTACGAAGCAGGCTTGCGTCAGCGCGGGAGTGTTAC
TTTGTGGATCAGTGAAGCAGCTATAGCCGGATGGATTGCACCACTGCGCAAGACGCGCGGTGGTCAATGTCGCTATTCTGACCTGGCTATTGAGACGACG
CTGATATGTGGCAAAGTGTTTAACCAGCCTCTGCGTCAGACAGAAGGCTTAATGGCCTCGTTGTTGCGGCTACTCAATGTTGAACTGCCGGTGCCAGATC
ACACAACATTCAGCAGACGCTGCGCCAATCTTGTTGTTTCCAGCTTAACCCGGTGCACCAGGAGGGATGGAACAGATGAACCTCTTCATGTGATCGTCGA
TAGCACTGGTATGAAGATATATGAAGCTGGCCAATGGCTTGAAGAAAAGCATGGCGCTAAATCTGCCCGAAAATGGCTCAAGCTGCATCTTGCTATTGAT
GCAGATAGCAATCAGGTCATTGCAGAAACACTGACTGATCAAAATACAAGTGACCTCAGCCAGGTTCCTGATTTGCTTGATATGATTGATCGCCCCATCG
CTTGTTTCATGGCAGATGGTGCTTATGACAGTGATCAAACCTATCAAGCTTTACGCAGTCATAGTCCCGGTGTGAGCATTATCATTCCGCCACGAATACG
AGACTTACAAGAAGCGTCATATGGCCCACCTGATCAGCGTGACTGGCATAGCCGCACAAATGCTCAACGCGGTCGGATGGAGTGGCAAAATCTTACCGAG
TATGGGAAGCGAGCGAGAGTAGAAAACGCCATAGGCAATTATAAATCAACAAACGGGCCAAAGCTAAGATCACGCAAATTCACCAACCAGAAGACTGAAG
TTAAACTTGGATGCGGCGTCCGTAACCGCATGCTGCAGACACCACGCCCGAAATCCGTCCGCGTCAAAGTTGAAACCACATAAGCCAGCATCAAAGATCG
GAATCCGCCACCAATTCGTTTCATGCAACAACGCC
AGCACAATTCCGCCCGTCGTCACCGGATACCCAAGCAGAAGTTCAAGGTCACGAACTGGGCGGAGTACGAAGCAGGCTTGCGTCAGCGCGGGAGTGTTAC
TTTGTGGATCAGTGAAGCAGCTATAGCCGGATGGATTGCACCACTGCGCAAGACGCGCGGTGGTCAATGTCGCTATTCTGACCTGGCTATTGAGACGACG
CTGATATGTGGCAAAGTGTTTAACCAGCCTCTGCGTCAGACAGAAGGCTTAATGGCCTCGTTGTTGCGGCTACTCAATGTTGAACTGCCGGTGCCAGATC
ACACAACATTCAGCAGACGCTGCGCCAATCTTGTTGTTTCCAGCTTAACCCGGTGCACCAGGAGGGATGGAACAGATGAACCTCTTCATGTGATCGTCGA
TAGCACTGGTATGAAGATATATGAAGCTGGCCAATGGCTTGAAGAAAAGCATGGCGCTAAATCTGCCCGAAAATGGCTCAAGCTGCATCTTGCTATTGAT
GCAGATAGCAATCAGGTCATTGCAGAAACACTGACTGATCAAAATACAAGTGACCTCAGCCAGGTTCCTGATTTGCTTGATATGATTGATCGCCCCATCG
CTTGTTTCATGGCAGATGGTGCTTATGACAGTGATCAAACCTATCAAGCTTTACGCAGTCATAGTCCCGGTGTGAGCATTATCATTCCGCCACGAATACG
AGACTTACAAGAAGCGTCATATGGCCCACCTGATCAGCGTGACTGGCATAGCCGCACAAATGCTCAACGCGGTCGGATGGAGTGGCAAAATCTTACCGAG
TATGGGAAGCGAGCGAGAGTAGAAAACGCCATAGGCAATTATAAATCAACAAACGGGCCAAAGCTAAGATCACGCAAATTCACCAACCAGAAGACTGAAG
TTAAACTTGGATGCGGCGTCCGTAACCGCATGCTGCAGACACCACGCCCGAAATCCGTCCGCGTCAAAGTTGAAACCACATAAGCCAGCATCAAAGATCG
GAATCCGCCACCAATTCGTTTCATGCAACAACGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 993 bp | 330 aa | 91 | 1083 | + | No |
Chemistry : DDE
ORF sequence :
MPFKHNSARRHRIPKQKFKVTNWAEYEAGLRQRGSVTLWISEAAIAGWIAPLRKTRGGQCRYSDLAIETTLICGKVFNQPLRQTEGLMASLLRLLNVELP
VPDHTTFSRRCANLVVSSLTRCTRRDGTDEPLHVIVDSTGMKIYEAGQWLEEKHGAKSARKWLKLHLAIDADSNQVIAETLTDQNTSDLSQVPDLLDMID
RPIACFMADGAYDSDQTYQALRSHSPGVSIIIPPRIRDLQEASYGPPDQRDWHSRTNAQRGRMEWQNLTEYGKRARVENAIGNYKSTNGPKLRSRKFTNQ
KTEVKLGCGVRNRMLQTPRPKSVRVKVETT
VPDHTTFSRRCANLVVSSLTRCTRRDGTDEPLHVIVDSTGMKIYEAGQWLEEKHGAKSARKWLKLHLAIDADSNQVIAETLTDQNTSDLSQVPDLLDMID
RPIACFMADGAYDSDQTYQALRSHSPGVSIIIPPRIRDLQEASYGPPDQRDWHSRTNAQRGRMEWQNLTEYGKRARVENAIGNYKSTNGPKLRSRKFTNQ
KTEVKLGCGVRNRMLQTPRPKSVRVKVETT
Blast result :
Comments
ISOcan1 is 60% aa similar to ISAli7.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Garcia,E. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Garcia,E. and Richardson,P. (2007) Direct submission GenBank.