ISHph1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABIA02000006 ND Hoeflea phototrophica
Hoeflea phototrophica DFL-43
DNA section
IS Length : 1130 bp

Ends


IR Length : 17/19

IRL : GGCATTGGTGCAGGGATCAAATTTCAACGTTTTGTATCTATGCGGCGGGG
IRR : GGCGTTGGTGCGCGGATCAGCTAATGAGCGGAGCTCGCTCTTTGATGGGT

Insertion site


Left flankDirect repeatRight flankDR Length
GCGGTTACCCTTGCGCAAATGC0

DNA sequence

GGCATTGGTGCAGGGATCAAATTTCAACGTTTTGTATCTATGCGGCGGGGATCGAAAATTAGCTTGATTGGTCCCGTATGCCGCATAAGCACAACTCCGC
CCGCCGCCATCATATCGGCAAGATGAAGTTCAAAGTGACGAACTGGGCGGAGTATGAGGCGGGCCTTCGCCGCCGTGGCAGCCTGACCCTTTGGATAACG
CCGGAGGCGTTGGCGGGCTGGGCAGCCCCACGTCGCAAGACGCGTGGTGGCCAGCCGCGTTACTCTGACCTGGCGATCGAAACTACGTTGACGTTGGGCA
TGGTATTCGGATTACGGTTGCGCCAAAGCGAAGGGCTTCTGAGTTCGGTGCTTGACATGATGGGATTGGATTTTGCCGTGCCCGATCACACCACGCTCAG
CCGACGGGCCAGAACCTGGAAGCCATCGGCCAGAAGCAAGGGCCACCAGCATGTGGCGAGTGGCCCCATTCACGTTCTGGTCGACAGCACCGGGCTGAAG
ATCTATGGCGCGGGCCAATGGCTGGAAGAAAAACACGGCGTAAAGTCCCGGCGCAGCTGGGGAAAGCTGCATCTGGCTGTTGACGCCGACAGTGGCGAGA
TCATTGCCCATAGCCTGACCGATCAGGAAACAGGCGACGCCTCGCAGGTGCAGCCATTGCTGGATCAGATCGATGATGAGATCGACCAGTTCACTGCCGA
TGGAGCTTATGATGGCCATCCATCCTACGACGCGGTGCTACGTCACAGTCCAGGCGTAAGGGTCGTCATCCCTCCGCGCTCGAACGCGGTTGAACATCCC
AAAGCCCACGCATGCTGCCAGAGAGACGACCACATAGCATCCATGCAAGCAGAGGGCCGACTGAAATGGCAGGCATCCACCGGCTATGGCAAACGAGCTT
TGGTTGAAACCGCGATGGGTCGATACAAGGGCGTCATTGGACAGCGTTTGCGTGCTCGGTCATTCCTTGCGCAGCAGACAGAAGCTGCGATCAGCGTCGC
CATTCTTAACCGAATGCTCGCCTGCGGACGCCCGAAATCCGCTCAACGCCGAGCATCGGCGGGAGCCGCCAAATAACCGGACCCATCAAAGAGCGAGCTC
CGCTCATTAGCTGATCCGCGCACCAACGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa1231076+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKFKVTNWAEYEAGLRRRGSLTLWITPEALAGWAAPRRKTRGGQPRYSDLAIETTLTLGMVFGLRLRQSEGLLSSVLDMMGLDFAVPDHTTLSRRARTWK
PSARSKGHQHVASGPIHVLVDSTGLKIYGAGQWLEEKHGVKSRRSWGKLHLAVDADSGEIIAHSLTDQETGDASQVQPLLDQIDDEIDQFTADGAYDGHP
SYDAVLRHSPGVRVVIPPRSNAVEHPKAHACCQRDDHIASMQAEGRLKWQASTGYGKRALVETAMGRYKGVIGQRLRARSFLAQQTEAAISVAILNRMLA
CGRPKSAQRRASAGAAK

 

Blast result :
Comments
ISHph1 is 66% aa similar to ISAzba3.
References
1] ISfinder annotation (2010)
2] Wagner-Dobler,I., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.