ISHph1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABIA02000006 | ND | Hoeflea phototrophica | Hoeflea phototrophica DFL-43 |
DNA section
IS Length : 1130 bp
Ends
IR Length : 17/19
IRL : GGCATTGGTGCAGGGATCAAATTTCAACGTTTTGTATCTATGCGGCGGGG
IRR : GGCGTTGGTGCGCGGATCAGCTAATGAGCGGAGCTCGCTCTTTGATGGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGGTTACCCTT | GCGCAAATGC | 0 |
DNA sequence
GGCATTGGTGCAGGGATCAAATTTCAACGTTTTGTATCTATGCGGCGGGGATCGAAAATTAGCTTGATTGGTCCCGTATGCCGCATAAGCACAACTCCGC
CCGCCGCCATCATATCGGCAAGATGAAGTTCAAAGTGACGAACTGGGCGGAGTATGAGGCGGGCCTTCGCCGCCGTGGCAGCCTGACCCTTTGGATAACG
CCGGAGGCGTTGGCGGGCTGGGCAGCCCCACGTCGCAAGACGCGTGGTGGCCAGCCGCGTTACTCTGACCTGGCGATCGAAACTACGTTGACGTTGGGCA
TGGTATTCGGATTACGGTTGCGCCAAAGCGAAGGGCTTCTGAGTTCGGTGCTTGACATGATGGGATTGGATTTTGCCGTGCCCGATCACACCACGCTCAG
CCGACGGGCCAGAACCTGGAAGCCATCGGCCAGAAGCAAGGGCCACCAGCATGTGGCGAGTGGCCCCATTCACGTTCTGGTCGACAGCACCGGGCTGAAG
ATCTATGGCGCGGGCCAATGGCTGGAAGAAAAACACGGCGTAAAGTCCCGGCGCAGCTGGGGAAAGCTGCATCTGGCTGTTGACGCCGACAGTGGCGAGA
TCATTGCCCATAGCCTGACCGATCAGGAAACAGGCGACGCCTCGCAGGTGCAGCCATTGCTGGATCAGATCGATGATGAGATCGACCAGTTCACTGCCGA
TGGAGCTTATGATGGCCATCCATCCTACGACGCGGTGCTACGTCACAGTCCAGGCGTAAGGGTCGTCATCCCTCCGCGCTCGAACGCGGTTGAACATCCC
AAAGCCCACGCATGCTGCCAGAGAGACGACCACATAGCATCCATGCAAGCAGAGGGCCGACTGAAATGGCAGGCATCCACCGGCTATGGCAAACGAGCTT
TGGTTGAAACCGCGATGGGTCGATACAAGGGCGTCATTGGACAGCGTTTGCGTGCTCGGTCATTCCTTGCGCAGCAGACAGAAGCTGCGATCAGCGTCGC
CATTCTTAACCGAATGCTCGCCTGCGGACGCCCGAAATCCGCTCAACGCCGAGCATCGGCGGGAGCCGCCAAATAACCGGACCCATCAAAGAGCGAGCTC
CGCTCATTAGCTGATCCGCGCACCAACGCC
CCGCCGCCATCATATCGGCAAGATGAAGTTCAAAGTGACGAACTGGGCGGAGTATGAGGCGGGCCTTCGCCGCCGTGGCAGCCTGACCCTTTGGATAACG
CCGGAGGCGTTGGCGGGCTGGGCAGCCCCACGTCGCAAGACGCGTGGTGGCCAGCCGCGTTACTCTGACCTGGCGATCGAAACTACGTTGACGTTGGGCA
TGGTATTCGGATTACGGTTGCGCCAAAGCGAAGGGCTTCTGAGTTCGGTGCTTGACATGATGGGATTGGATTTTGCCGTGCCCGATCACACCACGCTCAG
CCGACGGGCCAGAACCTGGAAGCCATCGGCCAGAAGCAAGGGCCACCAGCATGTGGCGAGTGGCCCCATTCACGTTCTGGTCGACAGCACCGGGCTGAAG
ATCTATGGCGCGGGCCAATGGCTGGAAGAAAAACACGGCGTAAAGTCCCGGCGCAGCTGGGGAAAGCTGCATCTGGCTGTTGACGCCGACAGTGGCGAGA
TCATTGCCCATAGCCTGACCGATCAGGAAACAGGCGACGCCTCGCAGGTGCAGCCATTGCTGGATCAGATCGATGATGAGATCGACCAGTTCACTGCCGA
TGGAGCTTATGATGGCCATCCATCCTACGACGCGGTGCTACGTCACAGTCCAGGCGTAAGGGTCGTCATCCCTCCGCGCTCGAACGCGGTTGAACATCCC
AAAGCCCACGCATGCTGCCAGAGAGACGACCACATAGCATCCATGCAAGCAGAGGGCCGACTGAAATGGCAGGCATCCACCGGCTATGGCAAACGAGCTT
TGGTTGAAACCGCGATGGGTCGATACAAGGGCGTCATTGGACAGCGTTTGCGTGCTCGGTCATTCCTTGCGCAGCAGACAGAAGCTGCGATCAGCGTCGC
CATTCTTAACCGAATGCTCGCCTGCGGACGCCCGAAATCCGCTCAACGCCGAGCATCGGCGGGAGCCGCCAAATAACCGGACCCATCAAAGAGCGAGCTC
CGCTCATTAGCTGATCCGCGCACCAACGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
954 bp | 317 aa | 123 | 1076 | + | No |
Chemistry : DDE
ORF sequence :
MKFKVTNWAEYEAGLRRRGSLTLWITPEALAGWAAPRRKTRGGQPRYSDLAIETTLTLGMVFGLRLRQSEGLLSSVLDMMGLDFAVPDHTTLSRRARTWK
PSARSKGHQHVASGPIHVLVDSTGLKIYGAGQWLEEKHGVKSRRSWGKLHLAVDADSGEIIAHSLTDQETGDASQVQPLLDQIDDEIDQFTADGAYDGHP
SYDAVLRHSPGVRVVIPPRSNAVEHPKAHACCQRDDHIASMQAEGRLKWQASTGYGKRALVETAMGRYKGVIGQRLRARSFLAQQTEAAISVAILNRMLA
CGRPKSAQRRASAGAAK
PSARSKGHQHVASGPIHVLVDSTGLKIYGAGQWLEEKHGVKSRRSWGKLHLAVDADSGEIIAHSLTDQETGDASQVQPLLDQIDDEIDQFTADGAYDGHP
SYDAVLRHSPGVRVVIPPRSNAVEHPKAHACCQRDDHIASMQAEGRLKWQASTGYGKRALVETAMGRYKGVIGQRLRARSFLAQQTEAAISVAILNRMLA
CGRPKSAQRRASAGAAK
Blast result :
Comments
ISHph1 is 66% aa similar to ISAzba3.
References
1] ISfinder annotation (2010)
2] Wagner-Dobler,I., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.
2] Wagner-Dobler,I., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.