ISSpn9

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Streptococcus pneumoniae
Streptococcus pneumoniae
DNA section
IS Length : 1534 bp

Ends


IR Length : 21/27

IRL : GGTAACTTCTCAAAGTAACTTCCACTTACCCAACCGAAGTGGAAATTAGT
IRR : GCTAAATTCCCAAACTAAGTTCCACCGCTAGTAGAAGTGGAAGTTAGTCT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTGAAAATTATTTTTCAAACAACATCTT9

DNA sequence

GGTAACTTCTCAAAGTAACTTCCACTTACCCAACCGAAGTGGAAATTAGTCTAAAACGGATTTTTATGGTGGAATTAAGTGTGAGACGTTTGAGTTAGAA
ATGAGGTCTACTATGACAAAACATAAACATCTTACCCTTTCAGACCGTAATGATATCCAACTAGGCTTAGAGCGCGGTGAAACCTTCAAAGCTATTGGAC
AGTCCATTCTAAAAGACCCGACCACTGTTTCTAAAGAAGTCAAACGAAACAGACTAGTCCGAGACTCTACATCTAAAAACCTTCCTTGCCCTTTACTCGA
TAAAGCTCCCTTTGTCTGTAATGGATGCCCTAAAAGAAGACAGAATTGTGGCTATAAGAAGATCTTCTACCTCGCTAAACAAGCTCAAAAACAATACGAA
CAAACTCTTGTTGAATCTCGTGAAGGAACTCCCCTTAATTCCAAGACCTTCTGGGACATGGACAAAGTCATTTTTGATGGTGTTAAAAAGGGACAACACA
TCTATCATATCCTCAAAACTCATAACCTTGATGTCAGCTCCTCAACCGTCTATCGACATATCCGAAAAGGATACCTATCTATCGCTCCGATTGACTTAGC
CAGAGCCGTTAAATTCAAAGAAAGACGGAAAAGTAAGCTACCTTCCATCCCTAAAGAAGCTAAAAAAGGCCGTTCCTATGAGGATTTCCAAAACTATTTA
GCACTGAATCAACTAGACTCTTGGCTAGAAATGGATACAGTTCTGGGCAGGATGGGAGGTAAAGTCCTACTCACCTTCAACCTGTCTTTCTGTAACTTTA
TCTTTGCTAGACTTCTAGATCATAAAACCGCCCTTGAGGTTACCAAACACCTCTATGATATCAAGAACACTCTTCACCAAGCTGACAAAGATTTCTCCCA
ACTCTTCCCTGTCATTCTTACCGATAATGGTGGAGAGTTTGCCAGAGTCGATGATATCGAAATGGATGTGCGAGGAGAGTGTAAACTCTTCTTTTGTGAC
CCTAATCGCTCTGACCAGAAAGGGAGAATTGAGAAAAATCACACGCTGATTCGCGACATTCTACCTAAAGGAACTTCTTTTGACAACTTAACTCAAGAGG
ACATCAATCTCGTTTGTTCGCATGTCAACAGTGTCAAACGCGCTGCTTTAAATGGAAAGTCAGCCTATGAACTCTTTGCCTTTACCTATGGAGAAGAGAT
TCCTAAGCTTCTAGGCATTTCTAAAATATCTGCAGAAGACGTCTGTCAGTCGTCTACATTACTCCAACATAAGTTCTAAAAACTAACCTTTAACCGCATT
CAAACGTCTCACACTAACTTCCACCATAGCGGAACTTAATCTGAAACGCTTTCAGATGAGGGGATTTTGTGCGCTCTTTTTTTCGATTCATTTTGGTTAC
AAAAGCGATGAAATCAAGCATGAGTAAAACCAGTGGAACTTACCCTGACACGGATTTCCACTGGTTTTTATGACTTTTATCAGACTAACTTCCACTTCTA
CTAGCGGTGGAACTTAGTTTGGGAATTTAGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa1141280+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTKHKHLTLSDRNDIQLGLERGETFKAIGQSILKDPTTVSKEVKRNRLVRDSTSKNLPCPLLDKAPFVCNGCPKRRQNCGYKKIFYLAKQAQKQYEQTLV
ESREGTPLNSKTFWDMDKVIFDGVKKGQHIYHILKTHNLDVSSSTVYRHIRKGYLSIAPIDLARAVKFKERRKSKLPSIPKEAKKGRSYEDFQNYLALNQ
LDSWLEMDTVLGRMGGKVLLTFNLSFCNFIFARLLDHKTALEVTKHLYDIKNTLHQADKDFSQLFPVILTDNGGEFARVDDIEMDVRGECKLFFCDPNRS
DQKGRIEKNHTLIRDILPKGTSFDNLTQEDINLVCSHVNSVKRAALNGKSAYELFAFTYGEEIPKLLGISKISAEDVCQSSTLLQHKF

 

Blast result :
Comments
Intact IS sequenced at capsule locus of non-typeable (non-encapsulated) Streptococcus pneumoniae from carriage study.
ISSpn9 is 86% aa similar to ISSag9.
References
1] Baldry S. (2010) Direct submission