ISSpn9
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Streptococcus pneumoniae | Streptococcus pneumoniae |
DNA section
IS Length : 1534 bp
Ends
IR Length : 21/27
IRL : GGTAACTTCTCAAAGTAACTTCCACTTACCCAACCGAAGTGGAAATTAGT
IRR : GCTAAATTCCCAAACTAAGTTCCACCGCTAGTAGAAGTGGAAGTTAGTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTGAAAATT | ATTTTTCAA | ACAACATCTT | 9 |
DNA sequence
GGTAACTTCTCAAAGTAACTTCCACTTACCCAACCGAAGTGGAAATTAGTCTAAAACGGATTTTTATGGTGGAATTAAGTGTGAGACGTTTGAGTTAGAA
ATGAGGTCTACTATGACAAAACATAAACATCTTACCCTTTCAGACCGTAATGATATCCAACTAGGCTTAGAGCGCGGTGAAACCTTCAAAGCTATTGGAC
AGTCCATTCTAAAAGACCCGACCACTGTTTCTAAAGAAGTCAAACGAAACAGACTAGTCCGAGACTCTACATCTAAAAACCTTCCTTGCCCTTTACTCGA
TAAAGCTCCCTTTGTCTGTAATGGATGCCCTAAAAGAAGACAGAATTGTGGCTATAAGAAGATCTTCTACCTCGCTAAACAAGCTCAAAAACAATACGAA
CAAACTCTTGTTGAATCTCGTGAAGGAACTCCCCTTAATTCCAAGACCTTCTGGGACATGGACAAAGTCATTTTTGATGGTGTTAAAAAGGGACAACACA
TCTATCATATCCTCAAAACTCATAACCTTGATGTCAGCTCCTCAACCGTCTATCGACATATCCGAAAAGGATACCTATCTATCGCTCCGATTGACTTAGC
CAGAGCCGTTAAATTCAAAGAAAGACGGAAAAGTAAGCTACCTTCCATCCCTAAAGAAGCTAAAAAAGGCCGTTCCTATGAGGATTTCCAAAACTATTTA
GCACTGAATCAACTAGACTCTTGGCTAGAAATGGATACAGTTCTGGGCAGGATGGGAGGTAAAGTCCTACTCACCTTCAACCTGTCTTTCTGTAACTTTA
TCTTTGCTAGACTTCTAGATCATAAAACCGCCCTTGAGGTTACCAAACACCTCTATGATATCAAGAACACTCTTCACCAAGCTGACAAAGATTTCTCCCA
ACTCTTCCCTGTCATTCTTACCGATAATGGTGGAGAGTTTGCCAGAGTCGATGATATCGAAATGGATGTGCGAGGAGAGTGTAAACTCTTCTTTTGTGAC
CCTAATCGCTCTGACCAGAAAGGGAGAATTGAGAAAAATCACACGCTGATTCGCGACATTCTACCTAAAGGAACTTCTTTTGACAACTTAACTCAAGAGG
ACATCAATCTCGTTTGTTCGCATGTCAACAGTGTCAAACGCGCTGCTTTAAATGGAAAGTCAGCCTATGAACTCTTTGCCTTTACCTATGGAGAAGAGAT
TCCTAAGCTTCTAGGCATTTCTAAAATATCTGCAGAAGACGTCTGTCAGTCGTCTACATTACTCCAACATAAGTTCTAAAAACTAACCTTTAACCGCATT
CAAACGTCTCACACTAACTTCCACCATAGCGGAACTTAATCTGAAACGCTTTCAGATGAGGGGATTTTGTGCGCTCTTTTTTTCGATTCATTTTGGTTAC
AAAAGCGATGAAATCAAGCATGAGTAAAACCAGTGGAACTTACCCTGACACGGATTTCCACTGGTTTTTATGACTTTTATCAGACTAACTTCCACTTCTA
CTAGCGGTGGAACTTAGTTTGGGAATTTAGC
ATGAGGTCTACTATGACAAAACATAAACATCTTACCCTTTCAGACCGTAATGATATCCAACTAGGCTTAGAGCGCGGTGAAACCTTCAAAGCTATTGGAC
AGTCCATTCTAAAAGACCCGACCACTGTTTCTAAAGAAGTCAAACGAAACAGACTAGTCCGAGACTCTACATCTAAAAACCTTCCTTGCCCTTTACTCGA
TAAAGCTCCCTTTGTCTGTAATGGATGCCCTAAAAGAAGACAGAATTGTGGCTATAAGAAGATCTTCTACCTCGCTAAACAAGCTCAAAAACAATACGAA
CAAACTCTTGTTGAATCTCGTGAAGGAACTCCCCTTAATTCCAAGACCTTCTGGGACATGGACAAAGTCATTTTTGATGGTGTTAAAAAGGGACAACACA
TCTATCATATCCTCAAAACTCATAACCTTGATGTCAGCTCCTCAACCGTCTATCGACATATCCGAAAAGGATACCTATCTATCGCTCCGATTGACTTAGC
CAGAGCCGTTAAATTCAAAGAAAGACGGAAAAGTAAGCTACCTTCCATCCCTAAAGAAGCTAAAAAAGGCCGTTCCTATGAGGATTTCCAAAACTATTTA
GCACTGAATCAACTAGACTCTTGGCTAGAAATGGATACAGTTCTGGGCAGGATGGGAGGTAAAGTCCTACTCACCTTCAACCTGTCTTTCTGTAACTTTA
TCTTTGCTAGACTTCTAGATCATAAAACCGCCCTTGAGGTTACCAAACACCTCTATGATATCAAGAACACTCTTCACCAAGCTGACAAAGATTTCTCCCA
ACTCTTCCCTGTCATTCTTACCGATAATGGTGGAGAGTTTGCCAGAGTCGATGATATCGAAATGGATGTGCGAGGAGAGTGTAAACTCTTCTTTTGTGAC
CCTAATCGCTCTGACCAGAAAGGGAGAATTGAGAAAAATCACACGCTGATTCGCGACATTCTACCTAAAGGAACTTCTTTTGACAACTTAACTCAAGAGG
ACATCAATCTCGTTTGTTCGCATGTCAACAGTGTCAAACGCGCTGCTTTAAATGGAAAGTCAGCCTATGAACTCTTTGCCTTTACCTATGGAGAAGAGAT
TCCTAAGCTTCTAGGCATTTCTAAAATATCTGCAGAAGACGTCTGTCAGTCGTCTACATTACTCCAACATAAGTTCTAAAAACTAACCTTTAACCGCATT
CAAACGTCTCACACTAACTTCCACCATAGCGGAACTTAATCTGAAACGCTTTCAGATGAGGGGATTTTGTGCGCTCTTTTTTTCGATTCATTTTGGTTAC
AAAAGCGATGAAATCAAGCATGAGTAAAACCAGTGGAACTTACCCTGACACGGATTTCCACTGGTTTTTATGACTTTTATCAGACTAACTTCCACTTCTA
CTAGCGGTGGAACTTAGTTTGGGAATTTAGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1167 bp | 388 aa | 114 | 1280 | + | No |
Chemistry : DDE
ORF sequence :
MTKHKHLTLSDRNDIQLGLERGETFKAIGQSILKDPTTVSKEVKRNRLVRDSTSKNLPCPLLDKAPFVCNGCPKRRQNCGYKKIFYLAKQAQKQYEQTLV
ESREGTPLNSKTFWDMDKVIFDGVKKGQHIYHILKTHNLDVSSSTVYRHIRKGYLSIAPIDLARAVKFKERRKSKLPSIPKEAKKGRSYEDFQNYLALNQ
LDSWLEMDTVLGRMGGKVLLTFNLSFCNFIFARLLDHKTALEVTKHLYDIKNTLHQADKDFSQLFPVILTDNGGEFARVDDIEMDVRGECKLFFCDPNRS
DQKGRIEKNHTLIRDILPKGTSFDNLTQEDINLVCSHVNSVKRAALNGKSAYELFAFTYGEEIPKLLGISKISAEDVCQSSTLLQHKF
ESREGTPLNSKTFWDMDKVIFDGVKKGQHIYHILKTHNLDVSSSTVYRHIRKGYLSIAPIDLARAVKFKERRKSKLPSIPKEAKKGRSYEDFQNYLALNQ
LDSWLEMDTVLGRMGGKVLLTFNLSFCNFIFARLLDHKTALEVTKHLYDIKNTLHQADKDFSQLFPVILTDNGGEFARVDDIEMDVRGECKLFFCDPNRS
DQKGRIEKNHTLIRDILPKGTSFDNLTQEDINLVCSHVNSVKRAALNGKSAYELFAFTYGEEIPKLLGISKISAEDVCQSSTLLQHKF
Blast result :
Comments
Intact IS sequenced at capsule locus of non-typeable (non-encapsulated) Streptococcus pneumoniae from carriage study.
ISSpn9 is 86% aa similar to ISSag9.
ISSpn9 is 86% aa similar to ISSag9.
References
1] Baldry S. (2010) Direct submission