ISNph19
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007426 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1418 bp
Ends
Left end : ACAGAGGCAGCGCGGAACCCCACGGCTTTAGCCGTGCGGAGGAAGCGCGTCACTCCTGAATCAAACCACGCATCCAGCCACGGCTGACTCCCCAACGCAA II struct. : Yes
Right end : GATGGTGAACGCGAACAGTGAGTTTTCGCCTACCACTGGTTCTAGTGGTCAGAGCGGGAGTCCACTGACAAGCCCACCGCTTTAGCGGTGGGTACCTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TAAGAGCGGCA | TCAT | ACGAAAGCTG | tgac |
DNA sequence
ACAGAGGCAGCGCGGAACCCCACGGCTTTAGCCGTGCGGAGGAAGCGCGTCACTCCTGAATCAAACCACGCATCCAGCCACGGCTGACTCCCCAACGCAA
AAACACAGTCTTTAAATAATACACTCCCAATATTTGAATCGTGGCGGTCGTCAGAAACCTCGAAATCAAGCTCGACGTTGACGAGGACGCCCACAGCGTT
CTCGATGAGACGTTCGAGCAATTCCGTCAAGCCGCCCAACACGCCGCGGACTACGGCTGGTCTGACGACCCTACTCAGATAATCGACAGCAAGAGCAAAC
TCCACGACGCCACGTACTCCGACGTACGTGAAAAGACAGACCTCACTGCAAACCACGTCCAAGCCGCACGCAGCCTCGCAGCAAACGCACTCGAAAACTG
CAAAGACCGTATCCTCGAAGACGGCAAGAAAGCCAGTAAACCAGAATTCCGCGGCACCGTGGTCTTCTACGACGGTCGCACGATAACGTACAACGACGAC
CACTGCACGCTATCAACTACAGAAGACCGTGTCACCGCGGAATACATCGTCCCCGAGGACACTCGCGGAACGCCGTTCGAAGAATACTGGGAGAATGATG
AGTGGGAACGTGGTGAGTCCACTCTTCACAAGCGTGATGGCACGTACTACTTGCACGTGTCGATGAAAAAGGAACGCGAGGAAGACGAGGCGTCTACATC
CGAGTACGGAGCGGTACTCGGCGTAGACTTGAACGTCGACGGCTACCTTGCCGTCACCTCGACTGGCGCGTTCCTCGGCAACGCAGACTACCTCAACCAC
AAGCGTGCGGAGTACGAACGGCGTCGTGGAAAGCTGCAACAGACAGGCACTCGCAGTGCCCACTTGACGCTAAAATCTATTGGTGACAGATTCTCGAATT
GGAGCGAGGATTACTTGCATCGCGTCGCACTCGCAGTGGTTCTCGAAGCCCGTCGACACGATTGTGACGCGATAGCGTTCGAGAACTTGAAACACATTCG
AGGGCGTATCTCGAACGCTTCTAAGTTCCAACAGTGGGCATTCAACAAACTCCAATCTCTTGTTGAGTACAAGGCTGAAGAGTACGGCATCCTCGTTGAT
GACGTGAAGCCACAGTACACGTCCCAGCGGTGTAGTCACTCGGAGTGTGGGTTCACGCACGAGGATAATCGTGACGGTGACGAGTTCGAGTGCCTGAGCT
GTGGAAAGGAGCTTCACGCGGATTACAACGCTGCTCGGAATATTGGGTGGCGTCTTGTCCAGCATTGGCTCAAGTCTGGTGCTGGACGGGCGGACTGTCA
GGTCGCCCTGAAGTCAGGGATGGTGAACGCGAACAGTGAGTTTTCGCCTACCACTGGTTCTAGTGGTCAGAGCGGGAGTCCACTGACAAGCCCACCGCTT
TAGCGGTGGGTACCTGAC
AAACACAGTCTTTAAATAATACACTCCCAATATTTGAATCGTGGCGGTCGTCAGAAACCTCGAAATCAAGCTCGACGTTGACGAGGACGCCCACAGCGTT
CTCGATGAGACGTTCGAGCAATTCCGTCAAGCCGCCCAACACGCCGCGGACTACGGCTGGTCTGACGACCCTACTCAGATAATCGACAGCAAGAGCAAAC
TCCACGACGCCACGTACTCCGACGTACGTGAAAAGACAGACCTCACTGCAAACCACGTCCAAGCCGCACGCAGCCTCGCAGCAAACGCACTCGAAAACTG
CAAAGACCGTATCCTCGAAGACGGCAAGAAAGCCAGTAAACCAGAATTCCGCGGCACCGTGGTCTTCTACGACGGTCGCACGATAACGTACAACGACGAC
CACTGCACGCTATCAACTACAGAAGACCGTGTCACCGCGGAATACATCGTCCCCGAGGACACTCGCGGAACGCCGTTCGAAGAATACTGGGAGAATGATG
AGTGGGAACGTGGTGAGTCCACTCTTCACAAGCGTGATGGCACGTACTACTTGCACGTGTCGATGAAAAAGGAACGCGAGGAAGACGAGGCGTCTACATC
CGAGTACGGAGCGGTACTCGGCGTAGACTTGAACGTCGACGGCTACCTTGCCGTCACCTCGACTGGCGCGTTCCTCGGCAACGCAGACTACCTCAACCAC
AAGCGTGCGGAGTACGAACGGCGTCGTGGAAAGCTGCAACAGACAGGCACTCGCAGTGCCCACTTGACGCTAAAATCTATTGGTGACAGATTCTCGAATT
GGAGCGAGGATTACTTGCATCGCGTCGCACTCGCAGTGGTTCTCGAAGCCCGTCGACACGATTGTGACGCGATAGCGTTCGAGAACTTGAAACACATTCG
AGGGCGTATCTCGAACGCTTCTAAGTTCCAACAGTGGGCATTCAACAAACTCCAATCTCTTGTTGAGTACAAGGCTGAAGAGTACGGCATCCTCGTTGAT
GACGTGAAGCCACAGTACACGTCCCAGCGGTGTAGTCACTCGGAGTGTGGGTTCACGCACGAGGATAATCGTGACGGTGACGAGTTCGAGTGCCTGAGCT
GTGGAAAGGAGCTTCACGCGGATTACAACGCTGCTCGGAATATTGGGTGGCGTCTTGTCCAGCATTGGCTCAAGTCTGGTGCTGGACGGGCGGACTGTCA
GGTCGCCCTGAAGTCAGGGATGGTGAACGCGAACAGTGAGTTTTCGCCTACCACTGGTTCTAGTGGTCAGAGCGGGAGTCCACTGACAAGCCCACCGCTT
TAGCGGTGGGTACCTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1263 bp | 420 aa | 141 | 1403 | + | No |
AG : TnpB
ORF sequence :
MAVVRNLEIKLDVDEDAHSVLDETFEQFRQAAQHAADYGWSDDPTQIIDSKSKLHDATYSDVREKTDLTANHVQAARSLAANALENCKDRILEDGKKASK
PEFRGTVVFYDGRTITYNDDHCTLSTTEDRVTAEYIVPEDTRGTPFEEYWENDEWERGESTLHKRDGTYYLHVSMKKEREEDEASTSEYGAVLGVDLNVD
GYLAVTSTGAFLGNADYLNHKRAEYERRRGKLQQTGTRSAHLTLKSIGDRFSNWSEDYLHRVALAVVLEARRHDCDAIAFENLKHIRGRISNASKFQQWA
FNKLQSLVEYKAEEYGILVDDVKPQYTSQRCSHSECGFTHEDNRDGDEFECLSCGKELHADYNAARNIGWRLVQHWLKSGAGRADCQVALKSGMVNANSE
FSPTTGSSGQSGSPLTSPPL
PEFRGTVVFYDGRTITYNDDHCTLSTTEDRVTAEYIVPEDTRGTPFEEYWENDEWERGESTLHKRDGTYYLHVSMKKEREEDEASTSEYGAVLGVDLNVD
GYLAVTSTGAFLGNADYLNHKRAEYERRRGKLQQTGTRSAHLTLKSIGDRFSNWSEDYLHRVALAVVLEARRHDCDAIAFENLKHIRGRISNASKFQQWA
FNKLQSLVEYKAEEYGILVDDVKPQYTSQRCSHSECGFTHEDNRDGDEFECLSCGKELHADYNAARNIGWRLVQHWLKSGAGRADCQVALKSGMVNANSE
FSPTTGSSGQSGSPLTSPPL
Blast result :
Comments
ISNph19 is 61% (ORFB) aa similar to ISNph16.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343