ISNph19

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1418 bp

Ends


Left end : ACAGAGGCAGCGCGGAACCCCACGGCTTTAGCCGTGCGGAGGAAGCGCGTCACTCCTGAATCAAACCACGCATCCAGCCACGGCTGACTCCCCAACGCAA II struct. : Yes
Right end : GATGGTGAACGCGAACAGTGAGTTTTCGCCTACCACTGGTTCTAGTGGTCAGAGCGGGAGTCCACTGACAAGCCCACCGCTTTAGCGGTGGGTACCTGAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TAAGAGCGGCATCATACGAAAGCTGtgac

DNA sequence

ACAGAGGCAGCGCGGAACCCCACGGCTTTAGCCGTGCGGAGGAAGCGCGTCACTCCTGAATCAAACCACGCATCCAGCCACGGCTGACTCCCCAACGCAA
AAACACAGTCTTTAAATAATACACTCCCAATATTTGAATCGTGGCGGTCGTCAGAAACCTCGAAATCAAGCTCGACGTTGACGAGGACGCCCACAGCGTT
CTCGATGAGACGTTCGAGCAATTCCGTCAAGCCGCCCAACACGCCGCGGACTACGGCTGGTCTGACGACCCTACTCAGATAATCGACAGCAAGAGCAAAC
TCCACGACGCCACGTACTCCGACGTACGTGAAAAGACAGACCTCACTGCAAACCACGTCCAAGCCGCACGCAGCCTCGCAGCAAACGCACTCGAAAACTG
CAAAGACCGTATCCTCGAAGACGGCAAGAAAGCCAGTAAACCAGAATTCCGCGGCACCGTGGTCTTCTACGACGGTCGCACGATAACGTACAACGACGAC
CACTGCACGCTATCAACTACAGAAGACCGTGTCACCGCGGAATACATCGTCCCCGAGGACACTCGCGGAACGCCGTTCGAAGAATACTGGGAGAATGATG
AGTGGGAACGTGGTGAGTCCACTCTTCACAAGCGTGATGGCACGTACTACTTGCACGTGTCGATGAAAAAGGAACGCGAGGAAGACGAGGCGTCTACATC
CGAGTACGGAGCGGTACTCGGCGTAGACTTGAACGTCGACGGCTACCTTGCCGTCACCTCGACTGGCGCGTTCCTCGGCAACGCAGACTACCTCAACCAC
AAGCGTGCGGAGTACGAACGGCGTCGTGGAAAGCTGCAACAGACAGGCACTCGCAGTGCCCACTTGACGCTAAAATCTATTGGTGACAGATTCTCGAATT
GGAGCGAGGATTACTTGCATCGCGTCGCACTCGCAGTGGTTCTCGAAGCCCGTCGACACGATTGTGACGCGATAGCGTTCGAGAACTTGAAACACATTCG
AGGGCGTATCTCGAACGCTTCTAAGTTCCAACAGTGGGCATTCAACAAACTCCAATCTCTTGTTGAGTACAAGGCTGAAGAGTACGGCATCCTCGTTGAT
GACGTGAAGCCACAGTACACGTCCCAGCGGTGTAGTCACTCGGAGTGTGGGTTCACGCACGAGGATAATCGTGACGGTGACGAGTTCGAGTGCCTGAGCT
GTGGAAAGGAGCTTCACGCGGATTACAACGCTGCTCGGAATATTGGGTGGCGTCTTGTCCAGCATTGGCTCAAGTCTGGTGCTGGACGGGCGGACTGTCA
GGTCGCCCTGAAGTCAGGGATGGTGAACGCGAACAGTGAGTTTTCGCCTACCACTGGTTCTAGTGGTCAGAGCGGGAGTCCACTGACAAGCCCACCGCTT
TAGCGGTGGGTACCTGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1263 bp420 aa1411403+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MAVVRNLEIKLDVDEDAHSVLDETFEQFRQAAQHAADYGWSDDPTQIIDSKSKLHDATYSDVREKTDLTANHVQAARSLAANALENCKDRILEDGKKASK
PEFRGTVVFYDGRTITYNDDHCTLSTTEDRVTAEYIVPEDTRGTPFEEYWENDEWERGESTLHKRDGTYYLHVSMKKEREEDEASTSEYGAVLGVDLNVD
GYLAVTSTGAFLGNADYLNHKRAEYERRRGKLQQTGTRSAHLTLKSIGDRFSNWSEDYLHRVALAVVLEARRHDCDAIAFENLKHIRGRISNASKFQQWA
FNKLQSLVEYKAEEYGILVDDVKPQYTSQRCSHSECGFTHEDNRDGDEFECLSCGKELHADYNAARNIGWRLVQHWLKSGAGRADCQVALKSGMVNANSE
FSPTTGSSGQSGSPLTSPPL

 

Blast result :
Comments
ISNph19 is 61% (ORFB) aa similar to ISNph16.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343