ISNph11
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007426 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1359 bp
Ends
Left end : CAGTGGACAAGGCGAATACCCCGAGGCTTGACCTCGGGGATGAAGCCGACACGCAGGGATACAAACCATTAAGTGAACACATCGGTAATCAAGAGACAGC II struct. : Yes
Right end : GAGACTGTGACCGCTACGGACACGGATGATATCCATGAAGTGTCTGCAAGTCACGTCGTAGAAACGGGAAGCCTCGGGGCTTGACCCCGAGGCGATTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GTTCCGTGAAAGAAGT | TTAT | TTTGACTTGCT | tcac |
DNA sequence
CAGTGGACAAGGCGAATACCCCGAGGCTTGACCTCGGGGATGAAGCCGACACGCAGGGATACAAACCATTAAGTGAACACATCGGTAATCAAGAGACAGC
GATGGAACACAGTCACCGCTACCGTGCCTACCCGACACAAGAGGTAGCGGAGCGACTGGAACATCATCTGGACGTTCATCGCCAACTCTACAACCATGTC
CGCTGGGACTACGAGAACAGCCCAGAGGACGACAAACCATCCGAGTACGACCAGAACAACAAACTCCCCGAGTGGAAGCGCAAATGGCCTGTGTTCGGTG
AACTGCACTCGAAGGCCGCGCAAGCCACTGTCGCTCGCTTCCATCGGAACCTCTCGAATCTTCGCAAGAAGAAAGAGAAGGGGTACAACGTTGGTCAGCT
CAAACGGCAAGCACCTACCGAGTACCGAAGCATGACGTACAACCAGTCCGGTTTCGACCTCGATGAAAAGAGGGGCCGTGACAGGTTCGCTTACGTTCGC
TTCAGCAAAATCGGCTGGGTCAAAATCCGTTACCATCGCCCGATTCCTGACTTCGCTTCGATTAAGGAAGTCACGGTCAAGAAGGAGACGACCGGCGAGT
GGTTCGTCTCGTTCGGCCTCGAAACCGACGACGCCGATCTGCCCGAGAAGCCCGACGTGAACTCGCTTGACGCAAGTAACAGCGTTGGGATTGACCTTGG
CATCCAGAACTACATCCACACCAGCGACGGCAAGACCGTGGATTGGCTCAACCTCGAAGACGAGTACGAGCGTCTTCGCCGTCAACAACGCAAGTTGTCG
CGGAAGGAAGAAGGGTCGAACAACTACGAGAAGCAACGCCGGGAAGTGGCGAAGGTCAAGCGTCACATCAAGCGGAAGGTGCTGGACTACCAGCACAAGA
TTACGACGTGGCTCGTCCGCGAGTACGATGCTGTATTCGTTGAGGACTTGGACGTGAAGGGAATGCTCGAACAGTCGCACAACGGTCGCAACAAGCAGGA
TGCGGCGTGGCGACAGTTCATCACCCTCCTCGAATACAAGGCCGACCTGTACGGCTGTCACGTCGTGCAAGTCGAAGCACGAGGCACCACCAAAGAATGC
GCGTCGTGCGGTGTGGAGTCAGCGAAACCCATCTGGGTCAGAGAACACTCCTGTCCGAGTTGTGGGTTCGAGACGGACAGGGACGCGAATGCAGCGATGA
ATGTCTTGGAGAGAGGCTTTTCTGCGTTAGGGCTTGGATGGCCCGAAGACACGCCCGTGGAGACTGTGACCGCTACGGACACGGATGATATCCATGAAGT
GTCTGCAAGTCACGTCGTAGAAACGGGAAGCCTCGGGGCTTGACCCCGAGGCGATTCAC
GATGGAACACAGTCACCGCTACCGTGCCTACCCGACACAAGAGGTAGCGGAGCGACTGGAACATCATCTGGACGTTCATCGCCAACTCTACAACCATGTC
CGCTGGGACTACGAGAACAGCCCAGAGGACGACAAACCATCCGAGTACGACCAGAACAACAAACTCCCCGAGTGGAAGCGCAAATGGCCTGTGTTCGGTG
AACTGCACTCGAAGGCCGCGCAAGCCACTGTCGCTCGCTTCCATCGGAACCTCTCGAATCTTCGCAAGAAGAAAGAGAAGGGGTACAACGTTGGTCAGCT
CAAACGGCAAGCACCTACCGAGTACCGAAGCATGACGTACAACCAGTCCGGTTTCGACCTCGATGAAAAGAGGGGCCGTGACAGGTTCGCTTACGTTCGC
TTCAGCAAAATCGGCTGGGTCAAAATCCGTTACCATCGCCCGATTCCTGACTTCGCTTCGATTAAGGAAGTCACGGTCAAGAAGGAGACGACCGGCGAGT
GGTTCGTCTCGTTCGGCCTCGAAACCGACGACGCCGATCTGCCCGAGAAGCCCGACGTGAACTCGCTTGACGCAAGTAACAGCGTTGGGATTGACCTTGG
CATCCAGAACTACATCCACACCAGCGACGGCAAGACCGTGGATTGGCTCAACCTCGAAGACGAGTACGAGCGTCTTCGCCGTCAACAACGCAAGTTGTCG
CGGAAGGAAGAAGGGTCGAACAACTACGAGAAGCAACGCCGGGAAGTGGCGAAGGTCAAGCGTCACATCAAGCGGAAGGTGCTGGACTACCAGCACAAGA
TTACGACGTGGCTCGTCCGCGAGTACGATGCTGTATTCGTTGAGGACTTGGACGTGAAGGGAATGCTCGAACAGTCGCACAACGGTCGCAACAAGCAGGA
TGCGGCGTGGCGACAGTTCATCACCCTCCTCGAATACAAGGCCGACCTGTACGGCTGTCACGTCGTGCAAGTCGAAGCACGAGGCACCACCAAAGAATGC
GCGTCGTGCGGTGTGGAGTCAGCGAAACCCATCTGGGTCAGAGAACACTCCTGTCCGAGTTGTGGGTTCGAGACGGACAGGGACGCGAATGCAGCGATGA
ATGTCTTGGAGAGAGGCTTTTCTGCGTTAGGGCTTGGATGGCCCGAAGACACGCCCGTGGAGACTGTGACCGCTACGGACACGGATGATATCCATGAAGT
GTCTGCAAGTCACGTCGTAGAAACGGGAAGCCTCGGGGCTTGACCCCGAGGCGATTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 413 aa | 102 | 1343 | + | No |
AG : TnpB
ORF sequence :
MEHSHRYRAYPTQEVAERLEHHLDVHRQLYNHVRWDYENSPEDDKPSEYDQNNKLPEWKRKWPVFGELHSKAAQATVARFHRNLSNLRKKKEKGYNVGQL
KRQAPTEYRSMTYNQSGFDLDEKRGRDRFAYVRFSKIGWVKIRYHRPIPDFASIKEVTVKKETTGEWFVSFGLETDDADLPEKPDVNSLDASNSVGIDLG
IQNYIHTSDGKTVDWLNLEDEYERLRRQQRKLSRKEEGSNNYEKQRREVAKVKRHIKRKVLDYQHKITTWLVREYDAVFVEDLDVKGMLEQSHNGRNKQD
AAWRQFITLLEYKADLYGCHVVQVEARGTTKECASCGVESAKPIWVREHSCPSCGFETDRDANAAMNVLERGFSALGLGWPEDTPVETVTATDTDDIHEV
SASHVVETGSLGA
KRQAPTEYRSMTYNQSGFDLDEKRGRDRFAYVRFSKIGWVKIRYHRPIPDFASIKEVTVKKETTGEWFVSFGLETDDADLPEKPDVNSLDASNSVGIDLG
IQNYIHTSDGKTVDWLNLEDEYERLRRQQRKLSRKEEGSNNYEKQRREVAKVKRHIKRKVLDYQHKITTWLVREYDAVFVEDLDVKGMLEQSHNGRNKQD
AAWRQFITLLEYKADLYGCHVVQVEARGTTKECASCGVESAKPIWVREHSCPSCGFETDRDANAAMNVLERGFSALGLGWPEDTPVETVTATDTDDIHEV
SASHVVETGSLGA
Blast result :
Comments
ISNph10 is 96% (ORFB) aa similar to ISNph10.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343