ISNph11

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1359 bp

Ends


Left end : CAGTGGACAAGGCGAATACCCCGAGGCTTGACCTCGGGGATGAAGCCGACACGCAGGGATACAAACCATTAAGTGAACACATCGGTAATCAAGAGACAGC II struct. : Yes
Right end : GAGACTGTGACCGCTACGGACACGGATGATATCCATGAAGTGTCTGCAAGTCACGTCGTAGAAACGGGAAGCCTCGGGGCTTGACCCCGAGGCGATTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GTTCCGTGAAAGAAGTTTATTTTGACTTGCTtcac

DNA sequence

CAGTGGACAAGGCGAATACCCCGAGGCTTGACCTCGGGGATGAAGCCGACACGCAGGGATACAAACCATTAAGTGAACACATCGGTAATCAAGAGACAGC
GATGGAACACAGTCACCGCTACCGTGCCTACCCGACACAAGAGGTAGCGGAGCGACTGGAACATCATCTGGACGTTCATCGCCAACTCTACAACCATGTC
CGCTGGGACTACGAGAACAGCCCAGAGGACGACAAACCATCCGAGTACGACCAGAACAACAAACTCCCCGAGTGGAAGCGCAAATGGCCTGTGTTCGGTG
AACTGCACTCGAAGGCCGCGCAAGCCACTGTCGCTCGCTTCCATCGGAACCTCTCGAATCTTCGCAAGAAGAAAGAGAAGGGGTACAACGTTGGTCAGCT
CAAACGGCAAGCACCTACCGAGTACCGAAGCATGACGTACAACCAGTCCGGTTTCGACCTCGATGAAAAGAGGGGCCGTGACAGGTTCGCTTACGTTCGC
TTCAGCAAAATCGGCTGGGTCAAAATCCGTTACCATCGCCCGATTCCTGACTTCGCTTCGATTAAGGAAGTCACGGTCAAGAAGGAGACGACCGGCGAGT
GGTTCGTCTCGTTCGGCCTCGAAACCGACGACGCCGATCTGCCCGAGAAGCCCGACGTGAACTCGCTTGACGCAAGTAACAGCGTTGGGATTGACCTTGG
CATCCAGAACTACATCCACACCAGCGACGGCAAGACCGTGGATTGGCTCAACCTCGAAGACGAGTACGAGCGTCTTCGCCGTCAACAACGCAAGTTGTCG
CGGAAGGAAGAAGGGTCGAACAACTACGAGAAGCAACGCCGGGAAGTGGCGAAGGTCAAGCGTCACATCAAGCGGAAGGTGCTGGACTACCAGCACAAGA
TTACGACGTGGCTCGTCCGCGAGTACGATGCTGTATTCGTTGAGGACTTGGACGTGAAGGGAATGCTCGAACAGTCGCACAACGGTCGCAACAAGCAGGA
TGCGGCGTGGCGACAGTTCATCACCCTCCTCGAATACAAGGCCGACCTGTACGGCTGTCACGTCGTGCAAGTCGAAGCACGAGGCACCACCAAAGAATGC
GCGTCGTGCGGTGTGGAGTCAGCGAAACCCATCTGGGTCAGAGAACACTCCTGTCCGAGTTGTGGGTTCGAGACGGACAGGGACGCGAATGCAGCGATGA
ATGTCTTGGAGAGAGGCTTTTCTGCGTTAGGGCTTGGATGGCCCGAAGACACGCCCGTGGAGACTGTGACCGCTACGGACACGGATGATATCCATGAAGT
GTCTGCAAGTCACGTCGTAGAAACGGGAAGCCTCGGGGCTTGACCCCGAGGCGATTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1242 bp413 aa1021343+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEHSHRYRAYPTQEVAERLEHHLDVHRQLYNHVRWDYENSPEDDKPSEYDQNNKLPEWKRKWPVFGELHSKAAQATVARFHRNLSNLRKKKEKGYNVGQL
KRQAPTEYRSMTYNQSGFDLDEKRGRDRFAYVRFSKIGWVKIRYHRPIPDFASIKEVTVKKETTGEWFVSFGLETDDADLPEKPDVNSLDASNSVGIDLG
IQNYIHTSDGKTVDWLNLEDEYERLRRQQRKLSRKEEGSNNYEKQRREVAKVKRHIKRKVLDYQHKITTWLVREYDAVFVEDLDVKGMLEQSHNGRNKQD
AAWRQFITLLEYKADLYGCHVVQVEARGTTKECASCGVESAKPIWVREHSCPSCGFETDRDANAAMNVLERGFSALGLGWPEDTPVETVTATDTDDIHEV
SASHVVETGSLGA

 

Blast result :
Comments
ISNph10 is 96% (ORFB) aa similar to ISNph10.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343