ISfinder Mirror Site

ISYkr1

Family IS30
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
	ND	Yersinia kristensenii	Yersinia kristensenii ATCC 33638

DNA section

IS Length : 1221 bp

Ends

IR Length : 22/26

IRL : TGTAGATTCAATTGATCAATGCAACAACCATGTTAAAACATGCAGTTGCG
IRR : TGTAGATTCAATCTGTCAACGCAACACTCTTTTCAATTATCTGTTTTGGT

Insertion site

Left flank	Direct repeat	Right flank	DR Length
AAAAAAGGCT	AC	CGCGCTCTTG	2

DNA sequence

TGTAGATTCAATTGATCAATGCAACAACCATGTTAAAACATGCAGTTGCGGAGGATTATTGAATGAAACGTACATTTACAGCAGCAGAAAAAAGGTTTGT
CTTCGACTCGTGGAAAAACGGAATTGGCTTCAGTGACATCGCTAAAATTCTGGATTCAAAGCCAGGAACAATTTTCACTATTCTGAGAGATACGGGAGGC
ATAAAGCCCTGTGAGCGCAAGCGGTCTTCATCACATTTAACATTGTCTGAGCGAGAAGAGATCCGTGTTGGACTGTCATCAAAAAAAAGCATCCGGGCAA
TTGCTAACTCACTTAATCGTTCGCCTTCAACGATATCAAGAGAGATCCTGCGTAATCGTGGCAGACGCTATTATAAGGCAGTAGACGCCAATAATCGGGC
TAATCGTATGGCAAAAAGGCCTAAGCCGTGTCTGCTCGAATTAAACCTGGAGTTGAGGGCTCTTGTTTTAGAAAAACTGGAACTCAAATGGTCTCCTGAA
CAAATATCAGGATGGCTTAAAAAGTCGAAACCTCGCCAAAAAACGATGCAAATATCAGCTGAGACCATTTACAAGACTATCTATTTCCGAAGCCGGGCCG
CATTAAATCACCTGTTAGCAAAGCATCTGCGTCGGGGGCATAGCCTTCGCCATGGCAAGCGGCATACCCGTAAGGGGGAGCGAGGGACGATTAATATCGT
CAACGGTGTTTCTATTCATGAGCGTTCCAGACACATCGATAATAGACGTTCCGTTGGCCACTGGGAGGGCGATTTAGTCAGCGGGTCTAAAAATACTCAT
ATAGCGACTCTTGTCGACAGAAAATCACGCTACACCATTATTCTGAAGCTAAAGGGAAAAGATGCTGCGTCAGTGACGCATGCGCTGACAGAAAAGTTTA
ATGAACTTCCCAATGAGCTGAGACGAACTTTGACCTGGGATCGGGGAATGGAGTTAGCAAAACATACAGAATTTACGGCCAGTACAGATATGCCAGTGTA
TTTCTGCGATCCCCAAAGCCCCTGGCAGCGAGGAACGAATGAAAATACTAACTCTCTTATCCGACAATACTTACCTAAAAAGACATGTCTTGCCCAACAT
TCTCAAGAGGTGCTCAATCAGATCGCCGATGAGCTCAATGATCGTCCGAGGAAAACATTAAAATTCAAAACACCAAAACAGATAATTGAAAAGAGTGTTG
CGTTGACAGATTGAATCTACA

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1152 bp	383 aa	63	1214	+	No

ORF function : Transposase
Description :

ORF sequence :

MKRTFTAAEKRFVFDSWKNGIGFSDIAKILDSKPGTIFTILRDTGGIKPCERKRSSSHLTLSEREEIRVGLSSKKSIRAIANSLNRSPSTISREILRNRG
RRYYKAVDANNRANRMAKRPKPCLLELNLELRALVLEKLELKWSPEQISGWLKKSKPRQKTMQISAETIYKTIYFRSRAALNHLLAKHLRRGHSLRHGKR
HTRKGERGTINIVNGVSIHERSRHIDNRRSVGHWEGDLVSGSKNTHIATLVDRKSRYTIILKLKGKDAASVTHALTEKFNELPNELRRTLTWDRGMELAK
HTEFTASTDMPVYFCDPQSPWQRGTNENTNSLIRQYLPKKTCLAQHSQEVLNQIADELNDRPRKTLKFKTPKQIIEKSVALTD

Blast result :

Comments

Genome in progress. Accession number: NZ_ACCA01000006.
ISYkr1 is 89% aa similar to IS30H.

References

1] ISfinder annotation (2010)
2] Read,T.D., Akmal,A., Bishop-Lilly,K., Chen,P.E., Cook,C., Kiley,M.P., Lentz,S., Mateczun,A., Nagarajan,N., Nolan,N., Osborne,B.I., Pop,M., Sozhamannan,S., Stewart,A.C., Sulakvelidze,A., Thomason,B., Willner,K. and Zwick,M.E. (2008) Direct submission GenBank.