ISShvi2

  • Family IS4
  • Group IS4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_014012 ND Shewanella violacea
Shewanella violacea DSS12
DNA section
IS Length : 1412 bp

Ends


IR Length : 13/16

IRL : TAATGCCGATCATTTAGTGATTTATCGATCGGTTGACTGATCTTCTAGAT
IRR : TAATGCCGGTAAGTTAAGCTTACTGGCATTTTTTATTTCTGGCATATTTC

Insertion site


Left flankDirect repeatRight flankDR Length
ACAAAAAAGCCCGCGATGAGCGGGCTTTTGTT12
AAAAAACGCAGCCAGATGGCTGCGCTTTTTAT12

DNA sequence

TAATGCCGATCATTTAGTGATTTATCGATCGGTTGACTGATCTTCTAGATGCTTCAGAATCCGGGTCCTATCTCTAGGCCTCGGATTTTTTATGCAAGTT
TCTCAAGCTTTTGACATGATCAACCAACTCAAACCTCATCAAGTTGAAACTCTCGCAGATTTACTCCCTCTGGAACTGATAGAGGAAGCGTATTCATTGA
CTGATACAGTCACGATAAGAAAACGTAAATTAACCTTAGAGTCAATGGCTTGGCTTCTTATCGGTATGGCTATCTATAACGATAAGTCGATGGCTCATAT
CGTTAATATGCTCGACATCGTTGATAGGGAGGGCAAGCCATTTGTTGCTCCGAGCGCATTAACTCAACGACGCAAAGATCTGGGTGAAGCGGCAATGAAA
GCACTGTTTGAGTGCACTCAAGCTCACTGGAATCGTGAAGCCCTGCACCCAAGTTGGAATGGACTGATGTTACTCGGAGTCGATGGGGTAGTGTGGCGGA
CAGAAGATACTCCAGATAACGCAGAAGCCTTCTCTCGACAAAAAGATACTCAATATCCTCAAGTTCGTATGGTCTGCCAAATGGAATTAAGTAGTCATCT
TATTACCGCTAGTGCTTTCGATGATTACGCCGTTAATGAGATGATTTTGGCCGAAAAGCTCATCGACTCGACACCGGATCATAGCCTAACACTGTTTGAC
CGAGGATTTTATTCACTGGGGCTACTTCATCAGTGGCAAACCACGGGTAACGAGCGACACTGGTTGATCCCTTTGAAAAAAAATGTCCAATATGAGGTGG
TTCGTAGCTTGGGGCGCAACGATAAAATCGTCCAATTAAAAAGCAATCCACATGCCAGAAAACGATGGCCAAAGCTGCCTTATGAACTGGAAGTTAGGTT
AATAAGTCGAAAGATTAATGGCAAGGAATACTCGGTTTTGACATCAATGATAGATCCCATGCGTTATCCAGTTACAGACATAGCTGACTTATACGTGCAT
CGATGGGAAATAGAATTAGGTTATCGAGAGCAGAAACAATACATGCTAGGTAATCGTTTAACGTTGAGAAGTCGACTGCCAGAGCTTGTAAAACAGGAGT
TGTGGGGGATCTTACTCACCTACAATCTAGTGCGTTATCAGATGGTGAAAATGTGTCATAAACTCAAAGGGGATTATCTCCCTTATCAATTGAGTTTTAA
TGGTTCTTTGGCTCATATTTTGAGGCTATTAGTGGGTTTGCCTTACTCGACACCAGGTGCTATTCCTCGTCAGCTTAAATACTTCTACGACATGGCAGAG
AGCCTGATTTTAGAACCTCGACGAACTCGGTCTTACCCTAGGATGGTCAAGCGCAGACCACAGAAATATGCCAGAAATAAAAAATGCCAGTAAGCTTAAC
TTACCGGCATTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1302 bp433 aa921393+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQVSQAFDMINQLKPHQVETLADLLPLELIEEAYSLTDTVTIRKRKLTLESMAWLLIGMAIYNDKSMAHIVNMLDIVDREGKPFVAPSALTQRRKDLGEA
AMKALFECTQAHWNREALHPSWNGLMLLGVDGVVWRTEDTPDNAEAFSRQKDTQYPQVRMVCQMELSSHLITASAFDDYAVNEMILAEKLIDSTPDHSLT
LFDRGFYSLGLLHQWQTTGNERHWLIPLKKNVQYEVVRSLGRNDKIVQLKSNPHARKRWPKLPYELEVRLISRKINGKEYSVLTSMIDPMRYPVTDIADL
YVHRWEIELGYREQKQYMLGNRLTLRSRLPELVKQELWGILLTYNLVRYQMVKMCHKLKGDYLPYQLSFNGSLAHILRLLVGLPYSTPGAIPRQLKYFYD
MAESLILEPRRTRSYPRMVKRRPQKYARNKKCQ

 

Blast result :
Comments
There are 2 copies of ISShvi2 encoded in the Shewanella violaceae DSS12 genome. The encoded transposase has 61% identity to that of IS1271.
References
1] Romine, M. F. (2010) Direct submission.