ISShvi2
- Family IS4
- Group IS4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_014012 | ND | Shewanella violacea | Shewanella violacea DSS12 |
DNA section
IS Length : 1412 bp
Ends
IR Length : 13/16
IRL : TAATGCCGATCATTTAGTGATTTATCGATCGGTTGACTGATCTTCTAGAT
IRR : TAATGCCGGTAAGTTAAGCTTACTGGCATTTTTTATTTCTGGCATATTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACAAAAAAGC | CCGCGATGAGCG | GGCTTTTGTT | 12 |
AAAAAACGCA | GCCAGATGGCTG | CGCTTTTTAT | 12 |
DNA sequence
TAATGCCGATCATTTAGTGATTTATCGATCGGTTGACTGATCTTCTAGATGCTTCAGAATCCGGGTCCTATCTCTAGGCCTCGGATTTTTTATGCAAGTT
TCTCAAGCTTTTGACATGATCAACCAACTCAAACCTCATCAAGTTGAAACTCTCGCAGATTTACTCCCTCTGGAACTGATAGAGGAAGCGTATTCATTGA
CTGATACAGTCACGATAAGAAAACGTAAATTAACCTTAGAGTCAATGGCTTGGCTTCTTATCGGTATGGCTATCTATAACGATAAGTCGATGGCTCATAT
CGTTAATATGCTCGACATCGTTGATAGGGAGGGCAAGCCATTTGTTGCTCCGAGCGCATTAACTCAACGACGCAAAGATCTGGGTGAAGCGGCAATGAAA
GCACTGTTTGAGTGCACTCAAGCTCACTGGAATCGTGAAGCCCTGCACCCAAGTTGGAATGGACTGATGTTACTCGGAGTCGATGGGGTAGTGTGGCGGA
CAGAAGATACTCCAGATAACGCAGAAGCCTTCTCTCGACAAAAAGATACTCAATATCCTCAAGTTCGTATGGTCTGCCAAATGGAATTAAGTAGTCATCT
TATTACCGCTAGTGCTTTCGATGATTACGCCGTTAATGAGATGATTTTGGCCGAAAAGCTCATCGACTCGACACCGGATCATAGCCTAACACTGTTTGAC
CGAGGATTTTATTCACTGGGGCTACTTCATCAGTGGCAAACCACGGGTAACGAGCGACACTGGTTGATCCCTTTGAAAAAAAATGTCCAATATGAGGTGG
TTCGTAGCTTGGGGCGCAACGATAAAATCGTCCAATTAAAAAGCAATCCACATGCCAGAAAACGATGGCCAAAGCTGCCTTATGAACTGGAAGTTAGGTT
AATAAGTCGAAAGATTAATGGCAAGGAATACTCGGTTTTGACATCAATGATAGATCCCATGCGTTATCCAGTTACAGACATAGCTGACTTATACGTGCAT
CGATGGGAAATAGAATTAGGTTATCGAGAGCAGAAACAATACATGCTAGGTAATCGTTTAACGTTGAGAAGTCGACTGCCAGAGCTTGTAAAACAGGAGT
TGTGGGGGATCTTACTCACCTACAATCTAGTGCGTTATCAGATGGTGAAAATGTGTCATAAACTCAAAGGGGATTATCTCCCTTATCAATTGAGTTTTAA
TGGTTCTTTGGCTCATATTTTGAGGCTATTAGTGGGTTTGCCTTACTCGACACCAGGTGCTATTCCTCGTCAGCTTAAATACTTCTACGACATGGCAGAG
AGCCTGATTTTAGAACCTCGACGAACTCGGTCTTACCCTAGGATGGTCAAGCGCAGACCACAGAAATATGCCAGAAATAAAAAATGCCAGTAAGCTTAAC
TTACCGGCATTA
TCTCAAGCTTTTGACATGATCAACCAACTCAAACCTCATCAAGTTGAAACTCTCGCAGATTTACTCCCTCTGGAACTGATAGAGGAAGCGTATTCATTGA
CTGATACAGTCACGATAAGAAAACGTAAATTAACCTTAGAGTCAATGGCTTGGCTTCTTATCGGTATGGCTATCTATAACGATAAGTCGATGGCTCATAT
CGTTAATATGCTCGACATCGTTGATAGGGAGGGCAAGCCATTTGTTGCTCCGAGCGCATTAACTCAACGACGCAAAGATCTGGGTGAAGCGGCAATGAAA
GCACTGTTTGAGTGCACTCAAGCTCACTGGAATCGTGAAGCCCTGCACCCAAGTTGGAATGGACTGATGTTACTCGGAGTCGATGGGGTAGTGTGGCGGA
CAGAAGATACTCCAGATAACGCAGAAGCCTTCTCTCGACAAAAAGATACTCAATATCCTCAAGTTCGTATGGTCTGCCAAATGGAATTAAGTAGTCATCT
TATTACCGCTAGTGCTTTCGATGATTACGCCGTTAATGAGATGATTTTGGCCGAAAAGCTCATCGACTCGACACCGGATCATAGCCTAACACTGTTTGAC
CGAGGATTTTATTCACTGGGGCTACTTCATCAGTGGCAAACCACGGGTAACGAGCGACACTGGTTGATCCCTTTGAAAAAAAATGTCCAATATGAGGTGG
TTCGTAGCTTGGGGCGCAACGATAAAATCGTCCAATTAAAAAGCAATCCACATGCCAGAAAACGATGGCCAAAGCTGCCTTATGAACTGGAAGTTAGGTT
AATAAGTCGAAAGATTAATGGCAAGGAATACTCGGTTTTGACATCAATGATAGATCCCATGCGTTATCCAGTTACAGACATAGCTGACTTATACGTGCAT
CGATGGGAAATAGAATTAGGTTATCGAGAGCAGAAACAATACATGCTAGGTAATCGTTTAACGTTGAGAAGTCGACTGCCAGAGCTTGTAAAACAGGAGT
TGTGGGGGATCTTACTCACCTACAATCTAGTGCGTTATCAGATGGTGAAAATGTGTCATAAACTCAAAGGGGATTATCTCCCTTATCAATTGAGTTTTAA
TGGTTCTTTGGCTCATATTTTGAGGCTATTAGTGGGTTTGCCTTACTCGACACCAGGTGCTATTCCTCGTCAGCTTAAATACTTCTACGACATGGCAGAG
AGCCTGATTTTAGAACCTCGACGAACTCGGTCTTACCCTAGGATGGTCAAGCGCAGACCACAGAAATATGCCAGAAATAAAAAATGCCAGTAAGCTTAAC
TTACCGGCATTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1302 bp | 433 aa | 92 | 1393 | + | No |
Chemistry : DDE
ORF sequence :
MQVSQAFDMINQLKPHQVETLADLLPLELIEEAYSLTDTVTIRKRKLTLESMAWLLIGMAIYNDKSMAHIVNMLDIVDREGKPFVAPSALTQRRKDLGEA
AMKALFECTQAHWNREALHPSWNGLMLLGVDGVVWRTEDTPDNAEAFSRQKDTQYPQVRMVCQMELSSHLITASAFDDYAVNEMILAEKLIDSTPDHSLT
LFDRGFYSLGLLHQWQTTGNERHWLIPLKKNVQYEVVRSLGRNDKIVQLKSNPHARKRWPKLPYELEVRLISRKINGKEYSVLTSMIDPMRYPVTDIADL
YVHRWEIELGYREQKQYMLGNRLTLRSRLPELVKQELWGILLTYNLVRYQMVKMCHKLKGDYLPYQLSFNGSLAHILRLLVGLPYSTPGAIPRQLKYFYD
MAESLILEPRRTRSYPRMVKRRPQKYARNKKCQ
AMKALFECTQAHWNREALHPSWNGLMLLGVDGVVWRTEDTPDNAEAFSRQKDTQYPQVRMVCQMELSSHLITASAFDDYAVNEMILAEKLIDSTPDHSLT
LFDRGFYSLGLLHQWQTTGNERHWLIPLKKNVQYEVVRSLGRNDKIVQLKSNPHARKRWPKLPYELEVRLISRKINGKEYSVLTSMIDPMRYPVTDIADL
YVHRWEIELGYREQKQYMLGNRLTLRSRLPELVKQELWGILLTYNLVRYQMVKMCHKLKGDYLPYQLSFNGSLAHILRLLVGLPYSTPGAIPRQLKYFYD
MAESLILEPRRTRSYPRMVKRRPQKYARNKKCQ
Blast result :
Comments
There are 2 copies of ISShvi2 encoded in the Shewanella violaceae DSS12 genome. The encoded transposase has 61% identity to that of IS1271.
References
1] Romine, M. F. (2010) Direct submission.