ISErh4

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Erysipelothrix rhusiopathiae
Erysipelothrix rhusiopathiae Fujisawa
DNA section
IS Length : 1032 bp

Ends


IR Length : 23/27

IRL : CCTAAATTCAAATCTCAACCGCACCACCCAAGGTGCGGTTGTTTTTGTAT
IRR : CTTTTATCAAATCTCAACCGCACCACTTTTACTTTTATTAAAGTCTATCT

Insertion site


Left flankDirect repeatRight flankDR Length
AAACAAAAATAAAACGTTCTGGCATAAGCCCGAACGTTTTTTTTATGAAT30
ACGATAAATTAAAAAACGTATCCGAAGATACGTTTTTTTTATTCTA26
AGAGGAAAACTAAAAAAAGAACCTTTTTCGAAAGGTTCTTTTTTTAGTCTTTACGGG37
ATTGAAGATTAAAAAAACGACCGAAGTCGTTTTTTTTTACTTTGAA26
CCATTAGACTAAAAAAAATCCCTTATCTTGTATAAAGATAAGGGATTTTTTTACTACTTCG41

DNA sequence

CCTAAATTCAAATCTCAACCGCACCACCCAAGGTGCGGTTGTTTTTGTATAATAAAAGGAGCCCACCCGACTAAAAGGAGCTCCCATATGAAGTATAAAC
AATTAGATAAAAAAATGAAAGACCAAATTGATATTCTATTAAGCATCGGCTATTCTATGCGCAAGGCAGCACGTAAACTCAATATATCTCATTCTACGAT
TTCTAGATATAAAAATAATGTCTATAAGAAACGAACGATTGATATTCGAGACAAATATTCCCACTTAATCGAATATCTTCATTCTCACTATGATCCTAAA
GTTCACTCGGTAGAAGTATGCTTGAGTAACTATAAACGATATCATCCATATAAACCGTGCGTTACATCGCAGCAAGTCTATAACTGGATTAACCAAGGTA
AGCTTGAAATAAAGCCAAATAGAATGTGCTATAAACGTCGAAAACGTAAAAAGAGAATTAGTGGAATGATGAATCACTTGAAATGGAACTTGGAAGAGAA
AACGGTACTTCCAATTAGCCTTAGACCTAAATACATTGAGGAACGAAACGAGATTGGTCATCTCGAAATTGACTCCATCATCGGTAAGAAACATGAAACT
GCAGCGATTATATCTATTGTGGACCGCTGCTCAAGAATGATCTGGCTTATTAAAGCAGAATATAGATATGACTATTACACATCAAACTTAATTCGGAAAT
TTATTGAAGAAAACAATATAACAACAAAATCGATAACAGTAGATAATGGACTTGAATTTAAAACACTAGGAATTACAGCCAAGCGGTTGGGTGTGAAACT
ATATAAGTGTGATCCGTACTGTTCTTTTCAACGTGGAACCAATGAACGAGCCAATGCAATCGTGAGAAGGTTTATACCAAAAGGAAAATCAATGTATGAT
ATAGCGCAACAATATCTTGATGATATTTGCTTCAAAATTAACTCAATGCCGCGAAAAATATTTGACTTCAAAACGGCCTATGAGATAGACTTTAATAAAA
GTAAAAGTGGTGCGGTTGAGATTTGATAAAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
939 bp312 aa881026+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKYKQLDKKMKDQIDILLSIGYSMRKAARKLNISHSTISRYKNNVYKKRTIDIRDKYSHLIEYLHSHYDPKVHSVEVCLSNYKRYHPYKPCVTSQQVYNW
INQGKLEIKPNRMCYKRRKRKKRISGMMNHLKWNLEEKTVLPISLRPKYIEERNEIGHLEIDSIIGKKHETAAIISIVDRCSRMIWLIKAEYRYDYYTSN
LIRKFIEENNITTKSITVDNGLEFKTLGITAKRLGVKLYKCDPYCSFQRGTNERANAIVRRFIPKGKSMYDIAQQYLDDICFKINSMPRKIFDFKTAYEI
DFNKSKSGAVEI

 

Blast result :
Comments
ISErh4 is 99% aa similar to ISErh2, and share only 94% on DNA with ISErh2.
There is 5 copies in E. rhusiopathiae strain Fujisawa.
References
1] Yohsuke Ogawa, Yoshihiro Shimoji (2010) Direct submission.