ISErh4
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Erysipelothrix rhusiopathiae | Erysipelothrix rhusiopathiae Fujisawa |
DNA section
IS Length : 1032 bp
Ends
IR Length : 23/27
IRL : CCTAAATTCAAATCTCAACCGCACCACCCAAGGTGCGGTTGTTTTTGTAT
IRR : CTTTTATCAAATCTCAACCGCACCACTTTTACTTTTATTAAAGTCTATCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAACAAAAAT | AAAACGTTCTGGCATAAGCCCGAACGTTTT | TTTTATGAAT | 30 |
ACGATAAATT | AAAAAACGTATCCGAAGATACGTTTT | TTTTATTCTA | 26 |
AGAGGAAAAC | TAAAAAAAGAACCTTTTTCGAAAGGTTCTTTTTTTAG | TCTTTACGGG | 37 |
ATTGAAGATT | AAAAAAACGACCGAAGTCGTTTTTTT | TTACTTTGAA | 26 |
CCATTAGACT | AAAAAAAATCCCTTATCTTGTATAAAGATAAGGGATTTTTT | TACTACTTCG | 41 |
DNA sequence
CCTAAATTCAAATCTCAACCGCACCACCCAAGGTGCGGTTGTTTTTGTATAATAAAAGGAGCCCACCCGACTAAAAGGAGCTCCCATATGAAGTATAAAC
AATTAGATAAAAAAATGAAAGACCAAATTGATATTCTATTAAGCATCGGCTATTCTATGCGCAAGGCAGCACGTAAACTCAATATATCTCATTCTACGAT
TTCTAGATATAAAAATAATGTCTATAAGAAACGAACGATTGATATTCGAGACAAATATTCCCACTTAATCGAATATCTTCATTCTCACTATGATCCTAAA
GTTCACTCGGTAGAAGTATGCTTGAGTAACTATAAACGATATCATCCATATAAACCGTGCGTTACATCGCAGCAAGTCTATAACTGGATTAACCAAGGTA
AGCTTGAAATAAAGCCAAATAGAATGTGCTATAAACGTCGAAAACGTAAAAAGAGAATTAGTGGAATGATGAATCACTTGAAATGGAACTTGGAAGAGAA
AACGGTACTTCCAATTAGCCTTAGACCTAAATACATTGAGGAACGAAACGAGATTGGTCATCTCGAAATTGACTCCATCATCGGTAAGAAACATGAAACT
GCAGCGATTATATCTATTGTGGACCGCTGCTCAAGAATGATCTGGCTTATTAAAGCAGAATATAGATATGACTATTACACATCAAACTTAATTCGGAAAT
TTATTGAAGAAAACAATATAACAACAAAATCGATAACAGTAGATAATGGACTTGAATTTAAAACACTAGGAATTACAGCCAAGCGGTTGGGTGTGAAACT
ATATAAGTGTGATCCGTACTGTTCTTTTCAACGTGGAACCAATGAACGAGCCAATGCAATCGTGAGAAGGTTTATACCAAAAGGAAAATCAATGTATGAT
ATAGCGCAACAATATCTTGATGATATTTGCTTCAAAATTAACTCAATGCCGCGAAAAATATTTGACTTCAAAACGGCCTATGAGATAGACTTTAATAAAA
GTAAAAGTGGTGCGGTTGAGATTTGATAAAAG
AATTAGATAAAAAAATGAAAGACCAAATTGATATTCTATTAAGCATCGGCTATTCTATGCGCAAGGCAGCACGTAAACTCAATATATCTCATTCTACGAT
TTCTAGATATAAAAATAATGTCTATAAGAAACGAACGATTGATATTCGAGACAAATATTCCCACTTAATCGAATATCTTCATTCTCACTATGATCCTAAA
GTTCACTCGGTAGAAGTATGCTTGAGTAACTATAAACGATATCATCCATATAAACCGTGCGTTACATCGCAGCAAGTCTATAACTGGATTAACCAAGGTA
AGCTTGAAATAAAGCCAAATAGAATGTGCTATAAACGTCGAAAACGTAAAAAGAGAATTAGTGGAATGATGAATCACTTGAAATGGAACTTGGAAGAGAA
AACGGTACTTCCAATTAGCCTTAGACCTAAATACATTGAGGAACGAAACGAGATTGGTCATCTCGAAATTGACTCCATCATCGGTAAGAAACATGAAACT
GCAGCGATTATATCTATTGTGGACCGCTGCTCAAGAATGATCTGGCTTATTAAAGCAGAATATAGATATGACTATTACACATCAAACTTAATTCGGAAAT
TTATTGAAGAAAACAATATAACAACAAAATCGATAACAGTAGATAATGGACTTGAATTTAAAACACTAGGAATTACAGCCAAGCGGTTGGGTGTGAAACT
ATATAAGTGTGATCCGTACTGTTCTTTTCAACGTGGAACCAATGAACGAGCCAATGCAATCGTGAGAAGGTTTATACCAAAAGGAAAATCAATGTATGAT
ATAGCGCAACAATATCTTGATGATATTTGCTTCAAAATTAACTCAATGCCGCGAAAAATATTTGACTTCAAAACGGCCTATGAGATAGACTTTAATAAAA
GTAAAAGTGGTGCGGTTGAGATTTGATAAAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
939 bp | 312 aa | 88 | 1026 | + | No |
Chemistry : DDE
ORF sequence :
MKYKQLDKKMKDQIDILLSIGYSMRKAARKLNISHSTISRYKNNVYKKRTIDIRDKYSHLIEYLHSHYDPKVHSVEVCLSNYKRYHPYKPCVTSQQVYNW
INQGKLEIKPNRMCYKRRKRKKRISGMMNHLKWNLEEKTVLPISLRPKYIEERNEIGHLEIDSIIGKKHETAAIISIVDRCSRMIWLIKAEYRYDYYTSN
LIRKFIEENNITTKSITVDNGLEFKTLGITAKRLGVKLYKCDPYCSFQRGTNERANAIVRRFIPKGKSMYDIAQQYLDDICFKINSMPRKIFDFKTAYEI
DFNKSKSGAVEI
INQGKLEIKPNRMCYKRRKRKKRISGMMNHLKWNLEEKTVLPISLRPKYIEERNEIGHLEIDSIIGKKHETAAIISIVDRCSRMIWLIKAEYRYDYYTSN
LIRKFIEENNITTKSITVDNGLEFKTLGITAKRLGVKLYKCDPYCSFQRGTNERANAIVRRFIPKGKSMYDIAQQYLDDICFKINSMPRKIFDFKTAYEI
DFNKSKSGAVEI
Blast result :
Comments
ISErh4 is 99% aa similar to ISErh2, and share only 94% on DNA with ISErh2.
There is 5 copies in E. rhusiopathiae strain Fujisawa.
There is 5 copies in E. rhusiopathiae strain Fujisawa.
References
1] Yohsuke Ogawa, Yoshihiro Shimoji (2010) Direct submission.