ISErh2
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Erysipelothrix rhusiopathiae | Erysipelothrix rhusiopathiae Fujisawa |
DNA section
IS Length : 1031 bp
Ends
IR Length : 23/27
IRL : CCTAAATTCAAATCTCAACCGCACCACCCAAGGTGCGGTTGTTTTTGTAT
IRR : CTTTTATCAAATCTCAACCGCACCACTTTTACTTTTATTAAAGTCTATCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAAAAGTTT | AACTTATGCA | 0 | |
AACGATAAGT | AAAAAGCACCTATGCAGTAGGTGCTTT | TATTTTACAT | 27 |
GAAGATTATA | AAAAAAACGAACAGATTCTGTTCGTTTTT | TTTTATCGTA | 29 |
TGATTCCACA | AAAAAACAAACATGATATCATGTTTGTTTTTT | TTATTATGAT | 32 |
ATTAATCATA | AAAAAACGGCTCATGGCCGTTTT | TTTTGACACC | 23 |
GTAATATAAA | AAAAGTTAGGCTAATCCTAACTTT | TATTTTGCTT | 24 |
CGAAGCCACT | AAAAAAGACGCTATTCCTAGCGTCTTTTTT | TATTTTAACT | 30 |
TTGCACAAAA | ATAAAACTGAGCTTAAGAGGCTCAGTTTTAT | TTATTTAGTA | 31 |
DNA sequence
CCTAAATTCAAATCTCAACCGCACCACCCAAGGTGCGGTTGTTTTTGTATAATAAAAGGAGCCCACCCGACTAAAAGGAGCTCCATATGAAGTATAAACA
ATTAGATAAAAAAATGAAAGACCAAATTGATATTCTATTAAGCATCGGCTACTCTATGCGCAAAGCAGCACGTAAACTCAACATATCTCATTCTACGATT
TCTAGATATAAAAATAATGTCTACAAAAAACGAAAGATTGATATTCGAGAAAAGTATTCTCACTTAATTGATTATCTGCATTCTCACTATGATCCTAAAG
TTCATTCGGTAGAAGTGTGTTTGAGTAACTATAAACGATATCATCCGTATAAACCGTGTGTTACATCGCAGCAAATCTATAATTGGATTAACCAAGGTAA
GCTTGAAATAAGACCAAATAGAATGTGTTATAAGCGACGAAAACGTAAGAAGAGAATTAGTGGAATGATGAATCATTTGAGATGGAACTTAGAAGAGAAA
ACTGTACTTCCAATTAGCTTAAGGCCGAAATATATAGAGGAACGCAACGAGATTGGTCATCTCGAAATCGACTCTATCATCGGTAAGAAACATGAATCTG
CAGCGATTATATCTATTGTGGACCGATGTTCAAGAATGACCTGGCTTATAAAAGCAGAATATCGATATGACTATTACACATCAAACTTAATTCGGAAATT
TATTGAAGAAAACAATATAACAACCAAATCGATAACAGTAGATAACGGACTTGAATTTAAAACATTGGGAATTACAGCCAAGCGGTTGGGTGTGAAGCTA
TACAAGTGTGATCCTTACTGTTCTTTTCAACGCGGAACCAATGAACGTGCGAATGCAATCGTGCGAAGGTTTATACCGAAAGGAAAATCGATGTATGATA
TAGCACAACAATATCTTGATGATATTTGCTTTAAAATTAACTCAATGCCACGAAAAATATTTGACTTCAAAACGGCGTATGAGATAGACTTTAATAAAAG
TAAAAGTGGTGCGGTTGAGATTTGATAAAAG
ATTAGATAAAAAAATGAAAGACCAAATTGATATTCTATTAAGCATCGGCTACTCTATGCGCAAAGCAGCACGTAAACTCAACATATCTCATTCTACGATT
TCTAGATATAAAAATAATGTCTACAAAAAACGAAAGATTGATATTCGAGAAAAGTATTCTCACTTAATTGATTATCTGCATTCTCACTATGATCCTAAAG
TTCATTCGGTAGAAGTGTGTTTGAGTAACTATAAACGATATCATCCGTATAAACCGTGTGTTACATCGCAGCAAATCTATAATTGGATTAACCAAGGTAA
GCTTGAAATAAGACCAAATAGAATGTGTTATAAGCGACGAAAACGTAAGAAGAGAATTAGTGGAATGATGAATCATTTGAGATGGAACTTAGAAGAGAAA
ACTGTACTTCCAATTAGCTTAAGGCCGAAATATATAGAGGAACGCAACGAGATTGGTCATCTCGAAATCGACTCTATCATCGGTAAGAAACATGAATCTG
CAGCGATTATATCTATTGTGGACCGATGTTCAAGAATGACCTGGCTTATAAAAGCAGAATATCGATATGACTATTACACATCAAACTTAATTCGGAAATT
TATTGAAGAAAACAATATAACAACCAAATCGATAACAGTAGATAACGGACTTGAATTTAAAACATTGGGAATTACAGCCAAGCGGTTGGGTGTGAAGCTA
TACAAGTGTGATCCTTACTGTTCTTTTCAACGCGGAACCAATGAACGTGCGAATGCAATCGTGCGAAGGTTTATACCGAAAGGAAAATCGATGTATGATA
TAGCACAACAATATCTTGATGATATTTGCTTTAAAATTAACTCAATGCCACGAAAAATATTTGACTTCAAAACGGCGTATGAGATAGACTTTAATAAAAG
TAAAAGTGGTGCGGTTGAGATTTGATAAAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
939 bp | 312 aa | 87 | 1025 | + | No |
Chemistry : DDE
ORF sequence :
MKYKQLDKKMKDQIDILLSIGYSMRKAARKLNISHSTISRYKNNVYKKRKIDIREKYSHLIDYLHSHYDPKVHSVEVCLSNYKRYHPYKPCVTSQQIYNW
INQGKLEIRPNRMCYKRRKRKKRISGMMNHLRWNLEEKTVLPISLRPKYIEERNEIGHLEIDSIIGKKHESAAIISIVDRCSRMTWLIKAEYRYDYYTSN
LIRKFIEENNITTKSITVDNGLEFKTLGITAKRLGVKLYKCDPYCSFQRGTNERANAIVRRFIPKGKSMYDIAQQYLDDICFKINSMPRKIFDFKTAYEI
DFNKSKSGAVEI
INQGKLEIRPNRMCYKRRKRKKRISGMMNHLRWNLEEKTVLPISLRPKYIEERNEIGHLEIDSIIGKKHESAAIISIVDRCSRMTWLIKAEYRYDYYTSN
LIRKFIEENNITTKSITVDNGLEFKTLGITAKRLGVKLYKCDPYCSFQRGTNERANAIVRRFIPKGKSMYDIAQQYLDDICFKINSMPRKIFDFKTAYEI
DFNKSKSGAVEI
Blast result :
Comments
There is 8 copies of ISErh2 in E. rhusiopathiae strain Fujisawa.
ISErh2 is 49% aa similar to IS1630.
The size of the DRs are between 23 to 32 bp.
ISErh2 is 49% aa similar to IS1630.
The size of the DRs are between 23 to 32 bp.
References
1] Yohsuke Ogawa, Yoshihiro Shimoji (2010) Direct submission.