ISErh2

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Erysipelothrix rhusiopathiae
Erysipelothrix rhusiopathiae Fujisawa
DNA section
IS Length : 1031 bp

Ends


IR Length : 23/27

IRL : CCTAAATTCAAATCTCAACCGCACCACCCAAGGTGCGGTTGTTTTTGTAT
IRR : CTTTTATCAAATCTCAACCGCACCACTTTTACTTTTATTAAAGTCTATCT

Insertion site


Left flankDirect repeatRight flankDR Length
AAAAAAGTTTAACTTATGCA0
AACGATAAGTAAAAAGCACCTATGCAGTAGGTGCTTTTATTTTACAT27
GAAGATTATAAAAAAAACGAACAGATTCTGTTCGTTTTTTTTTATCGTA29
TGATTCCACAAAAAAACAAACATGATATCATGTTTGTTTTTTTTATTATGAT32
ATTAATCATAAAAAAACGGCTCATGGCCGTTTTTTTTGACACC23
GTAATATAAAAAAAGTTAGGCTAATCCTAACTTTTATTTTGCTT24
CGAAGCCACTAAAAAAGACGCTATTCCTAGCGTCTTTTTTTATTTTAACT30
TTGCACAAAAATAAAACTGAGCTTAAGAGGCTCAGTTTTATTTATTTAGTA31

DNA sequence

CCTAAATTCAAATCTCAACCGCACCACCCAAGGTGCGGTTGTTTTTGTATAATAAAAGGAGCCCACCCGACTAAAAGGAGCTCCATATGAAGTATAAACA
ATTAGATAAAAAAATGAAAGACCAAATTGATATTCTATTAAGCATCGGCTACTCTATGCGCAAAGCAGCACGTAAACTCAACATATCTCATTCTACGATT
TCTAGATATAAAAATAATGTCTACAAAAAACGAAAGATTGATATTCGAGAAAAGTATTCTCACTTAATTGATTATCTGCATTCTCACTATGATCCTAAAG
TTCATTCGGTAGAAGTGTGTTTGAGTAACTATAAACGATATCATCCGTATAAACCGTGTGTTACATCGCAGCAAATCTATAATTGGATTAACCAAGGTAA
GCTTGAAATAAGACCAAATAGAATGTGTTATAAGCGACGAAAACGTAAGAAGAGAATTAGTGGAATGATGAATCATTTGAGATGGAACTTAGAAGAGAAA
ACTGTACTTCCAATTAGCTTAAGGCCGAAATATATAGAGGAACGCAACGAGATTGGTCATCTCGAAATCGACTCTATCATCGGTAAGAAACATGAATCTG
CAGCGATTATATCTATTGTGGACCGATGTTCAAGAATGACCTGGCTTATAAAAGCAGAATATCGATATGACTATTACACATCAAACTTAATTCGGAAATT
TATTGAAGAAAACAATATAACAACCAAATCGATAACAGTAGATAACGGACTTGAATTTAAAACATTGGGAATTACAGCCAAGCGGTTGGGTGTGAAGCTA
TACAAGTGTGATCCTTACTGTTCTTTTCAACGCGGAACCAATGAACGTGCGAATGCAATCGTGCGAAGGTTTATACCGAAAGGAAAATCGATGTATGATA
TAGCACAACAATATCTTGATGATATTTGCTTTAAAATTAACTCAATGCCACGAAAAATATTTGACTTCAAAACGGCGTATGAGATAGACTTTAATAAAAG
TAAAAGTGGTGCGGTTGAGATTTGATAAAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
939 bp312 aa871025+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKYKQLDKKMKDQIDILLSIGYSMRKAARKLNISHSTISRYKNNVYKKRKIDIREKYSHLIDYLHSHYDPKVHSVEVCLSNYKRYHPYKPCVTSQQIYNW
INQGKLEIRPNRMCYKRRKRKKRISGMMNHLRWNLEEKTVLPISLRPKYIEERNEIGHLEIDSIIGKKHESAAIISIVDRCSRMTWLIKAEYRYDYYTSN
LIRKFIEENNITTKSITVDNGLEFKTLGITAKRLGVKLYKCDPYCSFQRGTNERANAIVRRFIPKGKSMYDIAQQYLDDICFKINSMPRKIFDFKTAYEI
DFNKSKSGAVEI

 

Blast result :
Comments
There is 8 copies of ISErh2 in E. rhusiopathiae strain Fujisawa.
ISErh2 is 49% aa similar to IS1630.
The size of the DRs are between 23 to 32 bp.
References
1] Yohsuke Ogawa, Yoshihiro Shimoji (2010) Direct submission.