ISBps3

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ACCE01000006 ND Burkholderia pseudomallei
Burkholderia pseudomallei 576 BUC
DNA section
IS Length : 1133 bp

Ends


IR Length :

IRL : GGCGTTGTTGCATAAATCCGTCCGCGACATGCTGACGTTTACGCGCAACG
IRR : GGCGTTGTTGCATAAATCGAGCGTAAGGACGAAGTGACCTCCATGTTTTC

Insertion site


Left flankDirect repeatRight flankDR Length
TGGTTAAGTGATGCTGATTGTTCGATTGG9

DNA sequence

GGCGTTGTTGCATAAATCCGTCCGCGACATGCTGACGTTTACGCGCAACGGCGTCCGGGCGTAGCTCTGTTAACAGTTCGTTTTCCTGCGTACATTCTCG
ATTTTTTGCCGAGCAGATGCGCAAGGACACGACCAGCAAGCAAGCGAGTTCCAAAGCCAATTACCGCGTCAAGAACTGGACGCAGTACAACGCGGGCCTC
CTTGCTCAAGGGGATGTGACGATGTGGATCGACCCAAGCCTGTTCGCGGCGCCGCCCGAGCTGGACGTACGCTCCCGTGGCCGCCCTTGCGTCTACCCGG
ATGCACTCGTACAGATGTTGCTCGGCCTCAAGCAGGTCTTTCACCTGCCGCTTCGCGCGCTGCAAGGGTTCGCGCTCAGCCTGAGCAAGCTTGCCTTCCC
GGGCTTGCCGGTGCCCAACTACACGACCCTGAGTCGCCGCGCGCAGAAACTGAAAGTCGCGCTGCCAGCACTGCACACGGGCGAGCCGCTGCACCTCGTC
GTCGACAGTACCGGACTGAAGGTCTACGGCGAAGGCGAATGGAAGGTCCGCAAGCACGGCTGGTCCAAGCGCCGTACCTGGCGCAAGGTCCATCTGGCGA
TGGACGCGAACACCGGCCAGATCTGCGCGGCGCTGATGACGCATCAGGACGAGGGAGATGGCGAAGTGCTGCCCGATTTGCTCGACCAGATTCCCACTGA
CGTGCCGATCGACACCATTGGTGGCGACGGCGCCTACGACACCAAGCCGTGCCACGCGCAAATTGCCGCGCGCGCGGCTACCCCATCGATTCCGCCACGC
GAGGGCGCAATACCTTGGCCTGACAGCACACCCGGTGCGGCGTGGCGCAATGCGGCCATCGATGCCATCGCGAAGAGCAGTAGGCGCGAATGGAAGCAAG
AGAGTGGCTACCACCGGCGTTCGTTGGCAGAGACCCTGATGTACCGACTCAAGGTACTCACGGGCCCCTGCCTGTGGGCACGCGAGATCGGCTCCCAAGC
GACCGAAGTTTCGATTCGTGCAGGCGTGCTAAACCGCATGGCGGCACTTGCGCGCCCGCAGTCCATTCGTATCGCCTGAGGTCGAAAACATGGAGGTCAC
TTCGTCCTTACGCTCGATTTATGCAACAACGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
963 bp320 aa1171079+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKDTTSKQASSKANYRVKNWTQYNAGLLAQGDVTMWIDPSLFAAPPELDVRSRGRPCVYPDALVQMLLGLKQVFHLPLRALQGFALSLSKLAFPGLPVP
NYTTLSRRAQKLKVALPALHTGEPLHLVVDSTGLKVYGEGEWKVRKHGWSKRRTWRKVHLAMDANTGQICAALMTHQDEGDGEVLPDLLDQIPTDVPIDT
IGGDGAYDTKPCHAQIAARAATPSIPPREGAIPWPDSTPGAAWRNAAIDAIAKSSRREWKQESGYHRRSLAETLMYRLKVLTGPCLWAREIGSQATEVSI
RAGVLNRMAALARPQSIRIA

 

Blast result :
Comments
ISBps3 is 85% aa similar to IS1420.
References
1] ISfinder annotation (2010)
2] Brinkac,L.M., Harkins,D.M., Shrivastava,S., Durkin,A.S. and Sutton,G. (2010) Direct submission GenBank.