ISBps3
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ACCE01000006 | ND | Burkholderia pseudomallei | Burkholderia pseudomallei 576 BUC |
DNA section
IS Length : 1133 bp
Ends
IR Length :
IRL : GGCGTTGTTGCATAAATCCGTCCGCGACATGCTGACGTTTACGCGCAACG
IRR : GGCGTTGTTGCATAAATCGAGCGTAAGGACGAAGTGACCTCCATGTTTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGTTAAGTG | ATGCTGATT | GTTCGATTGG | 9 |
DNA sequence
GGCGTTGTTGCATAAATCCGTCCGCGACATGCTGACGTTTACGCGCAACGGCGTCCGGGCGTAGCTCTGTTAACAGTTCGTTTTCCTGCGTACATTCTCG
ATTTTTTGCCGAGCAGATGCGCAAGGACACGACCAGCAAGCAAGCGAGTTCCAAAGCCAATTACCGCGTCAAGAACTGGACGCAGTACAACGCGGGCCTC
CTTGCTCAAGGGGATGTGACGATGTGGATCGACCCAAGCCTGTTCGCGGCGCCGCCCGAGCTGGACGTACGCTCCCGTGGCCGCCCTTGCGTCTACCCGG
ATGCACTCGTACAGATGTTGCTCGGCCTCAAGCAGGTCTTTCACCTGCCGCTTCGCGCGCTGCAAGGGTTCGCGCTCAGCCTGAGCAAGCTTGCCTTCCC
GGGCTTGCCGGTGCCCAACTACACGACCCTGAGTCGCCGCGCGCAGAAACTGAAAGTCGCGCTGCCAGCACTGCACACGGGCGAGCCGCTGCACCTCGTC
GTCGACAGTACCGGACTGAAGGTCTACGGCGAAGGCGAATGGAAGGTCCGCAAGCACGGCTGGTCCAAGCGCCGTACCTGGCGCAAGGTCCATCTGGCGA
TGGACGCGAACACCGGCCAGATCTGCGCGGCGCTGATGACGCATCAGGACGAGGGAGATGGCGAAGTGCTGCCCGATTTGCTCGACCAGATTCCCACTGA
CGTGCCGATCGACACCATTGGTGGCGACGGCGCCTACGACACCAAGCCGTGCCACGCGCAAATTGCCGCGCGCGCGGCTACCCCATCGATTCCGCCACGC
GAGGGCGCAATACCTTGGCCTGACAGCACACCCGGTGCGGCGTGGCGCAATGCGGCCATCGATGCCATCGCGAAGAGCAGTAGGCGCGAATGGAAGCAAG
AGAGTGGCTACCACCGGCGTTCGTTGGCAGAGACCCTGATGTACCGACTCAAGGTACTCACGGGCCCCTGCCTGTGGGCACGCGAGATCGGCTCCCAAGC
GACCGAAGTTTCGATTCGTGCAGGCGTGCTAAACCGCATGGCGGCACTTGCGCGCCCGCAGTCCATTCGTATCGCCTGAGGTCGAAAACATGGAGGTCAC
TTCGTCCTTACGCTCGATTTATGCAACAACGCC
ATTTTTTGCCGAGCAGATGCGCAAGGACACGACCAGCAAGCAAGCGAGTTCCAAAGCCAATTACCGCGTCAAGAACTGGACGCAGTACAACGCGGGCCTC
CTTGCTCAAGGGGATGTGACGATGTGGATCGACCCAAGCCTGTTCGCGGCGCCGCCCGAGCTGGACGTACGCTCCCGTGGCCGCCCTTGCGTCTACCCGG
ATGCACTCGTACAGATGTTGCTCGGCCTCAAGCAGGTCTTTCACCTGCCGCTTCGCGCGCTGCAAGGGTTCGCGCTCAGCCTGAGCAAGCTTGCCTTCCC
GGGCTTGCCGGTGCCCAACTACACGACCCTGAGTCGCCGCGCGCAGAAACTGAAAGTCGCGCTGCCAGCACTGCACACGGGCGAGCCGCTGCACCTCGTC
GTCGACAGTACCGGACTGAAGGTCTACGGCGAAGGCGAATGGAAGGTCCGCAAGCACGGCTGGTCCAAGCGCCGTACCTGGCGCAAGGTCCATCTGGCGA
TGGACGCGAACACCGGCCAGATCTGCGCGGCGCTGATGACGCATCAGGACGAGGGAGATGGCGAAGTGCTGCCCGATTTGCTCGACCAGATTCCCACTGA
CGTGCCGATCGACACCATTGGTGGCGACGGCGCCTACGACACCAAGCCGTGCCACGCGCAAATTGCCGCGCGCGCGGCTACCCCATCGATTCCGCCACGC
GAGGGCGCAATACCTTGGCCTGACAGCACACCCGGTGCGGCGTGGCGCAATGCGGCCATCGATGCCATCGCGAAGAGCAGTAGGCGCGAATGGAAGCAAG
AGAGTGGCTACCACCGGCGTTCGTTGGCAGAGACCCTGATGTACCGACTCAAGGTACTCACGGGCCCCTGCCTGTGGGCACGCGAGATCGGCTCCCAAGC
GACCGAAGTTTCGATTCGTGCAGGCGTGCTAAACCGCATGGCGGCACTTGCGCGCCCGCAGTCCATTCGTATCGCCTGAGGTCGAAAACATGGAGGTCAC
TTCGTCCTTACGCTCGATTTATGCAACAACGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
963 bp | 320 aa | 117 | 1079 | + | No |
Chemistry : DDE
ORF sequence :
MRKDTTSKQASSKANYRVKNWTQYNAGLLAQGDVTMWIDPSLFAAPPELDVRSRGRPCVYPDALVQMLLGLKQVFHLPLRALQGFALSLSKLAFPGLPVP
NYTTLSRRAQKLKVALPALHTGEPLHLVVDSTGLKVYGEGEWKVRKHGWSKRRTWRKVHLAMDANTGQICAALMTHQDEGDGEVLPDLLDQIPTDVPIDT
IGGDGAYDTKPCHAQIAARAATPSIPPREGAIPWPDSTPGAAWRNAAIDAIAKSSRREWKQESGYHRRSLAETLMYRLKVLTGPCLWAREIGSQATEVSI
RAGVLNRMAALARPQSIRIA
NYTTLSRRAQKLKVALPALHTGEPLHLVVDSTGLKVYGEGEWKVRKHGWSKRRTWRKVHLAMDANTGQICAALMTHQDEGDGEVLPDLLDQIPTDVPIDT
IGGDGAYDTKPCHAQIAARAATPSIPPREGAIPWPDSTPGAAWRNAAIDAIAKSSRREWKQESGYHRRSLAETLMYRLKVLTGPCLWAREIGSQATEVSI
RAGVLNRMAALARPQSIRIA
Blast result :
Comments
ISBps3 is 85% aa similar to IS1420.
References
1] ISfinder annotation (2010)
2] Brinkac,L.M., Harkins,D.M., Shrivastava,S., Durkin,A.S. and Sutton,G. (2010) Direct submission GenBank.
2] Brinkac,L.M., Harkins,D.M., Shrivastava,S., Durkin,A.S. and Sutton,G. (2010) Direct submission GenBank.