ISEc35
- Family IS5
- Group IS903
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ADTZ01000456 | ND | Escherichia coli | Escherichia coli MS 116-1 |
DNA section
IS Length : 1051 bp
Ends
IR Length : 17/18
IRL : GGCGTTGTTGCTCAAATCAGGGAACTATCCCGCAGTTTGGTGATCTGATC
IRR : GGCCTTGTTGATCAAATCCAAAGTTGGATGGTCGCTCCCCAACCCGCCGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCGCTCTGTC | GAGGTAGTC | TCATAAGGTT | 9 |
DNA sequence
GGCGTTGTTGCTCAAATCAGGGAACTATCCCGCAGTTTGGTGATCTGATCTCTTAGGTTCACCACCGGGAGCGCCAGATGGGCAAGTCCAAGCACAAGAT
CAGCAACTGGAAACAGTACAACCAAGCCTTGGTGCAACGTGGTTCGTTGACCGTCTGGATGGATGAGCAAGCCATCCAGCAGTGGCATTGCCAGACCCAT
CATGGCCGCCGAGGGCGAGGCTTCCATTACAGCGACTCCGCCATTGAAACCGCGCTGATGCTCAAGGCGGTATTCAAGCTACCGCTGCGTGCCTTGGAAG
GCTTCATCAACTCGCTGTTCGAGCTGATGAATGTGCCCTTACAGTCGCCGGACTACAGCTGTATCAGCAAGCGCGCCAAGACGGTCGAAATCAAGTACCG
CCTACCGAGCCATGGCCCAGTGGCTCACCTGGTCATCGATGCCACCGGACTCAAGGTCTATGGCGAAGGCGAATGGAAAATTCGCAAGCACGGCAAGGAG
AAACGCCGCGTCTGGCGCAAGCTTCACCTTGCCGTAGATGCGGCGACCCATGCCATCGTTGCAGCCGAAGTCAGCCTGGAAACGGTGGGCGATAACGAGG
TGTTGCCCACGCTGCTCAACCCCTTGCGCCGCAAGATAGAACAAGTCAGCGCCGATGGTGCCTATGACACCAAAGCCTGTTATGCCCTACTACAAAAGAA
GGGCGCCAAGGCCACCATACCGCCGAGAAAAAATGCGGCATTCTGGAAGACAGACCATCCACGCAACGAGGCGGTTGCCGCGCTCAAGGCAGGAGAACTG
GAGCAATGGAAAAAGGACTCTGGCTATCATCAGCGCTCGATAGCTGAGACCGCCATGTATCGCTTCAAGCAGCTCATCGGTCCGAAACTGAGTCTGCGGA
GCTACAACGCCCAGGTGGGTGAGATCCTGGCCGGGGTGAAAGTCATGAACAAGGTCATAGGGCTTGGTATGCCTATTCGGCAGGCTGTCAACTAAGCCCG
CCCGGCGGGTTGGGGAGCGACCATCCAACTTTGGATTTGATCAACAAGGCC
CAGCAACTGGAAACAGTACAACCAAGCCTTGGTGCAACGTGGTTCGTTGACCGTCTGGATGGATGAGCAAGCCATCCAGCAGTGGCATTGCCAGACCCAT
CATGGCCGCCGAGGGCGAGGCTTCCATTACAGCGACTCCGCCATTGAAACCGCGCTGATGCTCAAGGCGGTATTCAAGCTACCGCTGCGTGCCTTGGAAG
GCTTCATCAACTCGCTGTTCGAGCTGATGAATGTGCCCTTACAGTCGCCGGACTACAGCTGTATCAGCAAGCGCGCCAAGACGGTCGAAATCAAGTACCG
CCTACCGAGCCATGGCCCAGTGGCTCACCTGGTCATCGATGCCACCGGACTCAAGGTCTATGGCGAAGGCGAATGGAAAATTCGCAAGCACGGCAAGGAG
AAACGCCGCGTCTGGCGCAAGCTTCACCTTGCCGTAGATGCGGCGACCCATGCCATCGTTGCAGCCGAAGTCAGCCTGGAAACGGTGGGCGATAACGAGG
TGTTGCCCACGCTGCTCAACCCCTTGCGCCGCAAGATAGAACAAGTCAGCGCCGATGGTGCCTATGACACCAAAGCCTGTTATGCCCTACTACAAAAGAA
GGGCGCCAAGGCCACCATACCGCCGAGAAAAAATGCGGCATTCTGGAAGACAGACCATCCACGCAACGAGGCGGTTGCCGCGCTCAAGGCAGGAGAACTG
GAGCAATGGAAAAAGGACTCTGGCTATCATCAGCGCTCGATAGCTGAGACCGCCATGTATCGCTTCAAGCAGCTCATCGGTCCGAAACTGAGTCTGCGGA
GCTACAACGCCCAGGTGGGTGAGATCCTGGCCGGGGTGAAAGTCATGAACAAGGTCATAGGGCTTGGTATGCCTATTCGGCAGGCTGTCAACTAAGCCCG
CCCGGCGGGTTGGGGAGCGACCATCCAACTTTGGATTTGATCAACAAGGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 918 bp | 305 aa | 78 | 995 | + | No |
Chemistry : DDE
ORF sequence :
MGKSKHKISNWKQYNQALVQRGSLTVWMDEQAIQQWHCQTHHGRRGRGFHYSDSAIETALMLKAVFKLPLRALEGFINSLFELMNVPLQSPDYSCISKRA
KTVEIKYRLPSHGPVAHLVIDATGLKVYGEGEWKIRKHGKEKRRVWRKLHLAVDAATHAIVAAEVSLETVGDNEVLPTLLNPLRRKIEQVSADGAYDTKA
CYALLQKKGAKATIPPRKNAAFWKTDHPRNEAVAALKAGELEQWKKDSGYHQRSIAETAMYRFKQLIGPKLSLRSYNAQVGEILAGVKVMNKVIGLGMPI
RQAVN
KTVEIKYRLPSHGPVAHLVIDATGLKVYGEGEWKIRKHGKEKRRVWRKLHLAVDAATHAIVAAEVSLETVGDNEVLPTLLNPLRRKIEQVSADGAYDTKA
CYALLQKKGAKATIPPRKNAAFWKTDHPRNEAVAALKAGELEQWKKDSGYHQRSIAETAMYRFKQLIGPKLSLRSYNAQVGEILAGVKVMNKVIGLGMPI
RQAVN
Blast result :
Comments
ISEc35 is 85% aa similar to ISSpu14.
References
1] ISfinder annotation (2010)
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2010) Direct submission GenBank.
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2010) Direct submission GenBank.