ISAjo1
- Family IS5
- Group IS903
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_GG704968 | ND | Acinetobacter johnsonii | Acinetobacter johnsonii SH046 |
DNA section
IS Length : 1039 bp
Ends
IR Length : 17/19
IRL : GGCTTTGTTGCACAAAGCTATTCTTAAAGGCTTCTTCAGCAATATAATTT
IRR : GGCTTTGTTGCATAAAGATTTAAAAGTTAAATTTACCCTGTTCTACTCAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TATAGTTGCG | ATG | TTGTACTAGG | 3 |
DNA sequence
GGCTTTGTTGCACAAAGCTATTCTTAAAGGCTTCTTCAGCAATATAATTTCCAAATGAAGAATCCTGCATCTAAAATTTATCGCACAACGAATTGGTCCT
CTTATAACCAAGCTCTAATCAAGCGAGGAAATATTTCAACTTGGTTCGATCCTCAGACTAAATGGTATGCTCAGCCACAGGCTAAGCATGGAAGAAATCA
AACTTATTCTGATACAGCAATTCAGTGCTGTTTGATGATCAAATCTATCTTTCGACTTTCTTTGCGTATGGTCACAGGCTTTGTGCAAAGCCTAATTCAA
CTCAGTGGGTTAAGTTGGACAGCACCAGATTATTCCACACTTTGCAGACGACAAAAGCAGATTGATATTGCGATCAGCTATCAAAAAAGTCATGAAGGAT
TACATCTATTGATAGACTCAACTGGCCTTAAGTTTTTAGGCGAAGGTGAATGGAAACGTAAGAAACATCAGCCTGAATATCGTCGGCAATGGCGTAAATT
ACATATTGGTATAGATGCTAGAACCTTGCAAATACGAGCTGTACAGCTGACAACAAATAATGTCAGTGATTCGCAAGTCCTTGGAGATTTACTTGATCAA
ATCCCATTGGATGAGCAGATTGATTCAGTCTATACAGACGGGGCTTATGACACCAAACAATGCCGTCAGGTCATTGCAGATCGGCAAGCGTATGCAGTGA
TTCCACCCAGAAAAAATACAAAGCCTTGGAAAGATAACAAAGTTCATTCGCGAGAGCGAAATGAATTACTTCGAACAGTTAAACGTTTCGGCAGGACACT
ATGGAAAAAATGGTCAGGCTATCATCGGCGAAGTTTGGTCGAAACCAAGATGCATTGCATCAAATTATTGGGGGATAAACTCAGTACGAGAAACTTTCAA
AGTCAAGTCAATGAAATGCATGCACGTGTGGCAGTATTAAATAAATTTACGGAGTTAGGTCGACCTCTCACCCAAGTTGTCACTTGAATTTGAGTAGAAC
AGGGTAAATTTAACTTTTAAATCTTTATGCAACAAAGCC
CTTATAACCAAGCTCTAATCAAGCGAGGAAATATTTCAACTTGGTTCGATCCTCAGACTAAATGGTATGCTCAGCCACAGGCTAAGCATGGAAGAAATCA
AACTTATTCTGATACAGCAATTCAGTGCTGTTTGATGATCAAATCTATCTTTCGACTTTCTTTGCGTATGGTCACAGGCTTTGTGCAAAGCCTAATTCAA
CTCAGTGGGTTAAGTTGGACAGCACCAGATTATTCCACACTTTGCAGACGACAAAAGCAGATTGATATTGCGATCAGCTATCAAAAAAGTCATGAAGGAT
TACATCTATTGATAGACTCAACTGGCCTTAAGTTTTTAGGCGAAGGTGAATGGAAACGTAAGAAACATCAGCCTGAATATCGTCGGCAATGGCGTAAATT
ACATATTGGTATAGATGCTAGAACCTTGCAAATACGAGCTGTACAGCTGACAACAAATAATGTCAGTGATTCGCAAGTCCTTGGAGATTTACTTGATCAA
ATCCCATTGGATGAGCAGATTGATTCAGTCTATACAGACGGGGCTTATGACACCAAACAATGCCGTCAGGTCATTGCAGATCGGCAAGCGTATGCAGTGA
TTCCACCCAGAAAAAATACAAAGCCTTGGAAAGATAACAAAGTTCATTCGCGAGAGCGAAATGAATTACTTCGAACAGTTAAACGTTTCGGCAGGACACT
ATGGAAAAAATGGTCAGGCTATCATCGGCGAAGTTTGGTCGAAACCAAGATGCATTGCATCAAATTATTGGGGGATAAACTCAGTACGAGAAACTTTCAA
AGTCAAGTCAATGAAATGCATGCACGTGTGGCAGTATTAAATAAATTTACGGAGTTAGGTCGACCTCTCACCCAAGTTGTCACTTGAATTTGAGTAGAAC
AGGGTAAATTTAACTTTTAAATCTTTATGCAACAAAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 933 bp | 310 aa | 55 | 987 | + | No |
Chemistry : DDE
ORF sequence :
MKNPASKIYRTTNWSSYNQALIKRGNISTWFDPQTKWYAQPQAKHGRNQTYSDTAIQCCLMIKSIFRLSLRMVTGFVQSLIQLSGLSWTAPDYSTLCRRQ
KQIDIAISYQKSHEGLHLLIDSTGLKFLGEGEWKRKKHQPEYRRQWRKLHIGIDARTLQIRAVQLTTNNVSDSQVLGDLLDQIPLDEQIDSVYTDGAYDT
KQCRQVIADRQAYAVIPPRKNTKPWKDNKVHSRERNELLRTVKRFGRTLWKKWSGYHRRSLVETKMHCIKLLGDKLSTRNFQSQVNEMHARVAVLNKFTE
LGRPLTQVVT
KQIDIAISYQKSHEGLHLLIDSTGLKFLGEGEWKRKKHQPEYRRQWRKLHIGIDARTLQIRAVQLTTNNVSDSQVLGDLLDQIPLDEQIDSVYTDGAYDT
KQCRQVIADRQAYAVIPPRKNTKPWKDNKVHSRERNELLRTVKRFGRTLWKKWSGYHRRSLVETKMHCIKLLGDKLSTRNFQSQVNEMHARVAVLNKFTE
LGRPLTQVVT
Blast result :
Comments
ISAjo1 is 90% aa similar to ISAha1.
References
1] ISfinder annotation (2010)
2] Ward,D., Feldgarden,M., Earl,A., Young,S.K., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Bochicchio,J., Borenstein,D., Chapman,S., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Thomson,T., Walk,T., White,J., Yandava,C., Seifert,H., Haas,B., Nusbaum,C. and Birren,B. (2009) Direct submission GenBank.
2] Ward,D., Feldgarden,M., Earl,A., Young,S.K., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Bochicchio,J., Borenstein,D., Chapman,S., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Thomson,T., Walk,T., White,J., Yandava,C., Seifert,H., Haas,B., Nusbaum,C. and Birren,B. (2009) Direct submission GenBank.