ISAha1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ADMT01000071 ND Acinetobacter haemolyticus
Acinetobacter haemolyticus ATCC 19194
DNA section
IS Length : 1039 bp

Ends


IR Length : 17

IRL : GGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATAATTC
IRR : GGCTTTGTTGCACAAACATTCAAAAGCTAAACTTCTTCCAAGTTATCTAA

Insertion site


Left flankDirect repeatRight flankDR Length
TGATACTGAAGAAAGGAAATAAAA4

DNA sequence

GGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATAATTCTCAAATGAATAAGCCCACACCTAAAATCTATCGTACAACCAATTGGTCTT
CTTATAACAGTGCATTAATAAATCGAGGAAATCTCTCAATTTGGTTTGATCCCAAGACTCAATGGTACGCTCAACCCAAAGGTAAACATGGTCGAAATCA
AACTTATTCAGATACAGCCATCCAATGCTGTTTAATGATCAAATCCTTATTTCGTCTTTCTTTACGCATGGTCACTGGCTTTGTGCAAAGTCTCATTCAT
CTTTGTAGATTAGATTGGACAGCACCAGACTATTCCACCATCTGCAGAAGACAAAAGCATATTGATATTGCAATTAACTATCAAAAAAGCAGTAATGGTC
TCCAGCTACTCGTCGATTCTACTGGCTTAAAGTTTCTAGGCGAAGGTGAATGGAAGCGTAAGAAACACCAACCTGAATATCGTCGCCAATGGCGTAAACT
TCATATTGGTATAGATGCTGAAACCCTTCAAATACGCGCTATTCAACTCACTACAAATAATGTGAGTGATTCACAAGTGCTTGGTGATTTACTCGATCAG
ATTCCACAAGATGAGCAGATTGACTCTGTCTATACTGATGGGGCTTATGACACCAAGCAATGCCGTCAAGTAATTGCAGACCGACAAGCACATGCGGTGA
TTCCGCCAAGAAAAAATGCGAAACCTTGGAAAGATACAAAGACCAGCTCGCTAGAGCGAAATGAATTACTTCGAACAGTTAAACGTTTAGGGAGAACAAT
ATGGAAAAATTGGTCAGGCTATCATCGCAGAAGTCTGATAGAAACCAAGATGCATTGCATCAAATTATTAGGCGATAAACTCCGTGCGAGAAACTTTCAA
AGCCAAGTCAATGAGATTCATGCACGTGTGGCCGTATTAAATAAATTTACAGATTTAGGCCGACCTCACACCCAAGTTGCCACTTAAATTTAGATAACTT
GGAAGAAGTTTAGCTTTTGAATGTTTGTGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa55987+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNKPTPKIYRTTNWSSYNSALINRGNLSIWFDPKTQWYAQPKGKHGRNQTYSDTAIQCCLMIKSLFRLSLRMVTGFVQSLIHLCRLDWTAPDYSTICRRQ
KHIDIAINYQKSSNGLQLLVDSTGLKFLGEGEWKRKKHQPEYRRQWRKLHIGIDAETLQIRAIQLTTNNVSDSQVLGDLLDQIPQDEQIDSVYTDGAYDT
KQCRQVIADRQAHAVIPPRKNAKPWKDTKTSSLERNELLRTVKRLGRTIWKNWSGYHRRSLIETKMHCIKLLGDKLRARNFQSQVNEIHARVAVLNKFTD
LGRPHTQVAT

 

Blast result :
Comments
ISAha1 is 92% aa similar to ISAba12.
References
1] ISMuzny,D., Qin,X., Deng,J., Jiang,H., Liu,Y., Qu,J., Song,X.-Z., Zhang,L., Thornton,R., Coyle,M., Francisco,L., Jackson,L., Javaid,M., Korchina,V., Kovar,C., Mata,R., Mathew,T., Ngo,R., Nguyen,L., Nguyen,N., Okwuonu,G., Ongeri,F., Pham,C., Simmons,D., Wilczek-Boney,K., Hale,W., Jakkamsetti,A., Pham,P., Ruth,R., San Lucas,F., Warren,J., Zhang,J., Zhao,Z., Zhou,C., Zhu,D., Lee,S., Bess,C., Blankenburg,K., Forbes,L., Fu,Q., Gubbala,S., Hirani,K., Jayaseelan,J.C., Lara,F., Munidasa,M., Palculict,T., Patil,S., Pu,L.-L., Saada,N., Tang,L., Weissenberger,G., Zhu,Y., Hemphill,L., Shang,Y., Youmans,B., Ayvaz,T., Ross,M., Santibanez,J., Aqrawi,P., Gross,S., Joshi,V., Fowler,G., Nazareth,L., Reid,J., Worley,K., Petrosino,J., Highlander,S., Gibbs,R. and Gibbs,R.finder annotation (2010) Direct submission GenBank.
2]