ISAha1
- Family IS5
- Group IS903
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ADMT01000071 | ND | Acinetobacter haemolyticus | Acinetobacter haemolyticus ATCC 19194 |
DNA section
IS Length : 1039 bp
Ends
IR Length : 17
IRL : GGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATAATTC
IRR : GGCTTTGTTGCACAAACATTCAAAAGCTAAACTTCTTCCAAGTTATCTAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGATACTGAA | GAAA | GGAAATAAAA | 4 |
DNA sequence
GGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATAATTCTCAAATGAATAAGCCCACACCTAAAATCTATCGTACAACCAATTGGTCTT
CTTATAACAGTGCATTAATAAATCGAGGAAATCTCTCAATTTGGTTTGATCCCAAGACTCAATGGTACGCTCAACCCAAAGGTAAACATGGTCGAAATCA
AACTTATTCAGATACAGCCATCCAATGCTGTTTAATGATCAAATCCTTATTTCGTCTTTCTTTACGCATGGTCACTGGCTTTGTGCAAAGTCTCATTCAT
CTTTGTAGATTAGATTGGACAGCACCAGACTATTCCACCATCTGCAGAAGACAAAAGCATATTGATATTGCAATTAACTATCAAAAAAGCAGTAATGGTC
TCCAGCTACTCGTCGATTCTACTGGCTTAAAGTTTCTAGGCGAAGGTGAATGGAAGCGTAAGAAACACCAACCTGAATATCGTCGCCAATGGCGTAAACT
TCATATTGGTATAGATGCTGAAACCCTTCAAATACGCGCTATTCAACTCACTACAAATAATGTGAGTGATTCACAAGTGCTTGGTGATTTACTCGATCAG
ATTCCACAAGATGAGCAGATTGACTCTGTCTATACTGATGGGGCTTATGACACCAAGCAATGCCGTCAAGTAATTGCAGACCGACAAGCACATGCGGTGA
TTCCGCCAAGAAAAAATGCGAAACCTTGGAAAGATACAAAGACCAGCTCGCTAGAGCGAAATGAATTACTTCGAACAGTTAAACGTTTAGGGAGAACAAT
ATGGAAAAATTGGTCAGGCTATCATCGCAGAAGTCTGATAGAAACCAAGATGCATTGCATCAAATTATTAGGCGATAAACTCCGTGCGAGAAACTTTCAA
AGCCAAGTCAATGAGATTCATGCACGTGTGGCCGTATTAAATAAATTTACAGATTTAGGCCGACCTCACACCCAAGTTGCCACTTAAATTTAGATAACTT
GGAAGAAGTTTAGCTTTTGAATGTTTGTGCAACAAAGCC
CTTATAACAGTGCATTAATAAATCGAGGAAATCTCTCAATTTGGTTTGATCCCAAGACTCAATGGTACGCTCAACCCAAAGGTAAACATGGTCGAAATCA
AACTTATTCAGATACAGCCATCCAATGCTGTTTAATGATCAAATCCTTATTTCGTCTTTCTTTACGCATGGTCACTGGCTTTGTGCAAAGTCTCATTCAT
CTTTGTAGATTAGATTGGACAGCACCAGACTATTCCACCATCTGCAGAAGACAAAAGCATATTGATATTGCAATTAACTATCAAAAAAGCAGTAATGGTC
TCCAGCTACTCGTCGATTCTACTGGCTTAAAGTTTCTAGGCGAAGGTGAATGGAAGCGTAAGAAACACCAACCTGAATATCGTCGCCAATGGCGTAAACT
TCATATTGGTATAGATGCTGAAACCCTTCAAATACGCGCTATTCAACTCACTACAAATAATGTGAGTGATTCACAAGTGCTTGGTGATTTACTCGATCAG
ATTCCACAAGATGAGCAGATTGACTCTGTCTATACTGATGGGGCTTATGACACCAAGCAATGCCGTCAAGTAATTGCAGACCGACAAGCACATGCGGTGA
TTCCGCCAAGAAAAAATGCGAAACCTTGGAAAGATACAAAGACCAGCTCGCTAGAGCGAAATGAATTACTTCGAACAGTTAAACGTTTAGGGAGAACAAT
ATGGAAAAATTGGTCAGGCTATCATCGCAGAAGTCTGATAGAAACCAAGATGCATTGCATCAAATTATTAGGCGATAAACTCCGTGCGAGAAACTTTCAA
AGCCAAGTCAATGAGATTCATGCACGTGTGGCCGTATTAAATAAATTTACAGATTTAGGCCGACCTCACACCCAAGTTGCCACTTAAATTTAGATAACTT
GGAAGAAGTTTAGCTTTTGAATGTTTGTGCAACAAAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 933 bp | 310 aa | 55 | 987 | + | No |
Chemistry : DDE
ORF sequence :
MNKPTPKIYRTTNWSSYNSALINRGNLSIWFDPKTQWYAQPKGKHGRNQTYSDTAIQCCLMIKSLFRLSLRMVTGFVQSLIHLCRLDWTAPDYSTICRRQ
KHIDIAINYQKSSNGLQLLVDSTGLKFLGEGEWKRKKHQPEYRRQWRKLHIGIDAETLQIRAIQLTTNNVSDSQVLGDLLDQIPQDEQIDSVYTDGAYDT
KQCRQVIADRQAHAVIPPRKNAKPWKDTKTSSLERNELLRTVKRLGRTIWKNWSGYHRRSLIETKMHCIKLLGDKLRARNFQSQVNEIHARVAVLNKFTD
LGRPHTQVAT
KHIDIAINYQKSSNGLQLLVDSTGLKFLGEGEWKRKKHQPEYRRQWRKLHIGIDAETLQIRAIQLTTNNVSDSQVLGDLLDQIPQDEQIDSVYTDGAYDT
KQCRQVIADRQAHAVIPPRKNAKPWKDTKTSSLERNELLRTVKRLGRTIWKNWSGYHRRSLIETKMHCIKLLGDKLRARNFQSQVNEIHARVAVLNKFTD
LGRPHTQVAT
Blast result :
Comments
ISAha1 is 92% aa similar to ISAba12.
References
1] ISMuzny,D., Qin,X., Deng,J., Jiang,H., Liu,Y., Qu,J., Song,X.-Z., Zhang,L., Thornton,R., Coyle,M., Francisco,L., Jackson,L., Javaid,M., Korchina,V., Kovar,C., Mata,R., Mathew,T., Ngo,R., Nguyen,L., Nguyen,N., Okwuonu,G., Ongeri,F., Pham,C., Simmons,D., Wilczek-Boney,K., Hale,W., Jakkamsetti,A., Pham,P., Ruth,R., San Lucas,F., Warren,J., Zhang,J., Zhao,Z., Zhou,C., Zhu,D., Lee,S., Bess,C., Blankenburg,K., Forbes,L., Fu,Q., Gubbala,S., Hirani,K., Jayaseelan,J.C., Lara,F., Munidasa,M., Palculict,T., Patil,S., Pu,L.-L., Saada,N., Tang,L., Weissenberger,G., Zhu,Y., Hemphill,L., Shang,Y., Youmans,B., Ayvaz,T., Ross,M., Santibanez,J., Aqrawi,P., Gross,S., Joshi,V., Fowler,G., Nazareth,L., Reid,J., Worley,K., Petrosino,J., Highlander,S., Gibbs,R. and Gibbs,R.finder annotation (2010) Direct submission GenBank.
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