ISAba12

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ACYR01000092 ND Acinetobacter baumannii
Acinetobacter baumannii ATCC 17978
Acinetobacter baumannii 6013113
DNA section
IS Length : 1039 bp

Ends


IR Length : 16

IRL : GGCTTTGTTGCACAAACCTATCTGTAAAGGGTTTTTCAGCGATATAATTT
IRR : GGCTTTGTTGCACAAAGATTTGAAATGCAAAGCGCCCCTAATTGAGCTAA

Insertion site


Left flankDirect repeatRight flankDR Length
ATGGTTATGAGGTTAGAAAGGTTAAATATTG0
AAAGCCTTTAGTTTTTTAGAGCATTGTAT9
AGATTCAACCAATGAACGCT0

DNA sequence

GGCTTTGTTGCACAAACCTATCTGTAAAGGGTTTTTCAGCGATATAATTTTCAAATGAAGAAGCCTGCACACAAAATCTACCGCACAACCAATTGGCCCG
CATATAACCGAGCACTCATGAGTCGCGGAAATATTGCCATTTGGTTTGATCCTGCTACGCAATGGTATGCTCCATCAAAAGGCAAACAAGGGCGAAATCA
AACCTACTCCGACGCAGCCATCCAATGCTGCTTAATGATTAAATCCTTATTCCGTCTGTCTTTACGTATGGTCACAGGCTTTGTGCAAAGTCTGATTAAA
CTTTGCGGATTAAATTGGATAGCTCCAGATTACACCACGCTTTGTAGAAGACAAAAGCATATTGATATTGTAATCAGCTACCAAAAAAGTAGCTATGGGC
TGCATCTACTCATGGACTCTACAGGCATGAAGTTTCTAGGTGAGGGCGAATGGAAACGCAAGAAACATGGACCTGAATATCGTCGCCAATGGCGTAAACT
TCATATTGGTATAGATGCTAAAACCCTACAAATACGAGCAGTTCAGCTTACAACCAATAATGTCAGTGATTCACAGGTGCTTGGTGATTTACTTAATCAG
ATTCCACAAGATGAGCAGATTAACTCTGTTTATACCGATGGAGCTTATGACACCAAGCAATGCCGTCAGGTCATTGCAGATCGGCAAGCGCATGCGGTGA
TTCCACCTAGAAAAAATGCGAAACCATGGAAAGATACAAAGAGTAGCTCGCTAGAGCGAAATGAATTACTTCGAGCAATTAAACGTTTAGGTAGGATACT
ATGGAAAAAATGGTCAGGCTATCATCGGCGAAGTTTGGTTGAAACTAAGATGCATTGCATCAAATTATTAGGAGATAAACTCAGTGCAAGGAGTTTTGAT
AGCCAAGTGAATGAGATCCATGCACGTGTAGCAGTCCTTAACAGATTTACGGAATTAGGTCGCCCACTTACCCAAGTTACGCCTTAAATTTAGCTCAATT
AGGGGCGCTTTGCATTTCAAATCTTTGTGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa55987+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKKPAHKIYRTTNWPAYNRALMSRGNIAIWFDPATQWYAPSKGKQGRNQTYSDAAIQCCLMIKSLFRLSLRMVTGFVQSLIKLCGLNWIAPDYTTLCRRQ
KHIDIVISYQKSSYGLHLLMDSTGMKFLGEGEWKRKKHGPEYRRQWRKLHIGIDAKTLQIRAVQLTTNNVSDSQVLGDLLNQIPQDEQINSVYTDGAYDT
KQCRQVIADRQAHAVIPPRKNAKPWKDTKSSSLERNELLRAIKRLGRILWKKWSGYHRRSLVETKMHCIKLLGDKLSARSFDSQVNEIHARVAVLNRFTE
LGRPLTQVTP

 

Blast result :
Comments
ISAba12 is 96% aa similar to IS17.
Additionnal accession number : NC_009085.
References
1] ISfinder annotation (2010)
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2009) Direct submission GenBank.
3]Smith,M.G., Gianoulis,T.A., Pukatzki,S., Mekalanos,J.J., Ornston,L.N., Gerstein,M. and Snyder,M. (2007) Genes Dev. 21 (5), 601-614.