ISRusp2
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_DS999054 | ND | Ruegeria sp. | Ruegeria sp. R11 |
DNA section
IS Length : 1049 bp
Ends
IR Length : 16/17
IRL : GGCTTTGTTGCACAAATGGTGAGATGGATTCACTGTTTGAATCCAGTGGG
IRR : GGCTCTGTTGCACAAATCGGGGTTTGAGCGGACTTCCCCTTCCCCAGACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGTCCCTTGAACT | TGTTGCACCGACTGTGG | 0 |
DNA sequence
GGCTTTGTTGCACAAATGGTGAGATGGATTCACTGTTTGAATCCAGTGGGGTAGCAACGGTGCATGAGCAGTTGGTCCCCTACGAGGTACAAGACCAGGA
ACTGGCCTTCGTACAACACGGCGCTGAAGCAGCGCGGTTCGCTATCAATTTGGTTTGATCCTGAGATGTCGTGGCATGCGCTGCCGACAGGCAAGCGGGG
GCGTCAGCCCGAGTTCAGCGATGCAGCGATCCAGATTTGCCTGACGATGAAGGTGTTGTTCGGCATGCCCCTCCGGCAAACCACTGGGTTCGTCGAAAGC
CTCCTCCGTCTGGCGGGACTGGACTGGAAAGTCCCGGACTTCAGCACCCTGTGCCGCCGTCAGAAGACACTGAACGTCGCCATCCCGTACCGGGGCGGAT
CGGGACCGCTCCACCTGCTGATCGATGCCACCGGGATCAAGGCCGAGGGCGAAGGAGAATGGAACGCGCGCAAACATGGCGGATCAAAGAAACGCCTGTG
GCGCAAGCTTCATCTCGGTATGGATGAGGAAACACTGGAGATCCGCGCGGTCGGCGTCACGACAAGCAATATCGGCGATGCCCCGATGCTGCCCGATCTT
CTGGACCAAATCCCGCCCGATCAGGAGATTGCCACGGTCACCGCTGACGGGGCATATGACACGCGCAGGTGTCACAATGTGATTGCCGCTCGAGGTGCCG
CTGCCGTCATCCCGCCGCGCAAGAATGCGCAGCTGTGGAAGCCAACGACAGTGGGCGCCATCGCGCGAAACGAAGCCGTGAGGGCCTGCAAATATCTCGG
ACGCGCCTTATGGAGAAAATTGACCGGCTACCACCGCCGAAGCCGCGCAGAGACGAAGATGAACTGCGTCAAACTTCTCGGCCAAGGCCTCATGGCGCGA
GACTTCGACCGGCAGGTTGCGGAGCTCCAAGTCCGGATCGCGGTGCTCAATCGCTACACGGCCCTTGGCATACCCATCACAGAGCCCGTAGGATAAGTCC
GTCTGGGGAAGGGGAAGTCCGCTCAAACCCCGATTTGTGCAACAGAGCC
ACTGGCCTTCGTACAACACGGCGCTGAAGCAGCGCGGTTCGCTATCAATTTGGTTTGATCCTGAGATGTCGTGGCATGCGCTGCCGACAGGCAAGCGGGG
GCGTCAGCCCGAGTTCAGCGATGCAGCGATCCAGATTTGCCTGACGATGAAGGTGTTGTTCGGCATGCCCCTCCGGCAAACCACTGGGTTCGTCGAAAGC
CTCCTCCGTCTGGCGGGACTGGACTGGAAAGTCCCGGACTTCAGCACCCTGTGCCGCCGTCAGAAGACACTGAACGTCGCCATCCCGTACCGGGGCGGAT
CGGGACCGCTCCACCTGCTGATCGATGCCACCGGGATCAAGGCCGAGGGCGAAGGAGAATGGAACGCGCGCAAACATGGCGGATCAAAGAAACGCCTGTG
GCGCAAGCTTCATCTCGGTATGGATGAGGAAACACTGGAGATCCGCGCGGTCGGCGTCACGACAAGCAATATCGGCGATGCCCCGATGCTGCCCGATCTT
CTGGACCAAATCCCGCCCGATCAGGAGATTGCCACGGTCACCGCTGACGGGGCATATGACACGCGCAGGTGTCACAATGTGATTGCCGCTCGAGGTGCCG
CTGCCGTCATCCCGCCGCGCAAGAATGCGCAGCTGTGGAAGCCAACGACAGTGGGCGCCATCGCGCGAAACGAAGCCGTGAGGGCCTGCAAATATCTCGG
ACGCGCCTTATGGAGAAAATTGACCGGCTACCACCGCCGAAGCCGCGCAGAGACGAAGATGAACTGCGTCAAACTTCTCGGCCAAGGCCTCATGGCGCGA
GACTTCGACCGGCAGGTTGCGGAGCTCCAAGTCCGGATCGCGGTGCTCAATCGCTACACGGCCCTTGGCATACCCATCACAGAGCCCGTAGGATAAGTCC
GTCTGGGGAAGGGGAAGTCCGCTCAAACCCCGATTTGTGCAACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 64 | 996 | + | No |
Chemistry : DDE
ORF sequence :
MSSWSPTRYKTRNWPSYNTALKQRGSLSIWFDPEMSWHALPTGKRGRQPEFSDAAIQICLTMKVLFGMPLRQTTGFVESLLRLAGLDWKVPDFSTLCRRQ
KTLNVAIPYRGGSGPLHLLIDATGIKAEGEGEWNARKHGGSKKRLWRKLHLGMDEETLEIRAVGVTTSNIGDAPMLPDLLDQIPPDQEIATVTADGAYDT
RRCHNVIAARGAAAVIPPRKNAQLWKPTTVGAIARNEAVRACKYLGRALWRKLTGYHRRSRAETKMNCVKLLGQGLMARDFDRQVAELQVRIAVLNRYTA
LGIPITEPVG
KTLNVAIPYRGGSGPLHLLIDATGIKAEGEGEWNARKHGGSKKRLWRKLHLGMDEETLEIRAVGVTTSNIGDAPMLPDLLDQIPPDQEIATVTADGAYDT
RRCHNVIAARGAAAVIPPRKNAQLWKPTTVGAIARNEAVRACKYLGRALWRKLTGYHRRSRAETKMNCVKLLGQGLMARDFDRQVAELQVRIAVLNRYTA
LGIPITEPVG
Blast result :
Comments
ISRusp2 is 89% aa similar to ISRusp1.
References
1] ISfinder annotation (2010)
2] Kjelleberg,S., Case,R., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.
2] Kjelleberg,S., Case,R., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.