ISRusp2

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_DS999054 ND Ruegeria sp.
Ruegeria sp. R11
DNA section
IS Length : 1049 bp

Ends


IR Length : 16/17

IRL : GGCTTTGTTGCACAAATGGTGAGATGGATTCACTGTTTGAATCCAGTGGG
IRR : GGCTCTGTTGCACAAATCGGGGTTTGAGCGGACTTCCCCTTCCCCAGACG

Insertion site


Left flankDirect repeatRight flankDR Length
TTGTCCCTTGAACTTGTTGCACCGACTGTGG0

DNA sequence

GGCTTTGTTGCACAAATGGTGAGATGGATTCACTGTTTGAATCCAGTGGGGTAGCAACGGTGCATGAGCAGTTGGTCCCCTACGAGGTACAAGACCAGGA
ACTGGCCTTCGTACAACACGGCGCTGAAGCAGCGCGGTTCGCTATCAATTTGGTTTGATCCTGAGATGTCGTGGCATGCGCTGCCGACAGGCAAGCGGGG
GCGTCAGCCCGAGTTCAGCGATGCAGCGATCCAGATTTGCCTGACGATGAAGGTGTTGTTCGGCATGCCCCTCCGGCAAACCACTGGGTTCGTCGAAAGC
CTCCTCCGTCTGGCGGGACTGGACTGGAAAGTCCCGGACTTCAGCACCCTGTGCCGCCGTCAGAAGACACTGAACGTCGCCATCCCGTACCGGGGCGGAT
CGGGACCGCTCCACCTGCTGATCGATGCCACCGGGATCAAGGCCGAGGGCGAAGGAGAATGGAACGCGCGCAAACATGGCGGATCAAAGAAACGCCTGTG
GCGCAAGCTTCATCTCGGTATGGATGAGGAAACACTGGAGATCCGCGCGGTCGGCGTCACGACAAGCAATATCGGCGATGCCCCGATGCTGCCCGATCTT
CTGGACCAAATCCCGCCCGATCAGGAGATTGCCACGGTCACCGCTGACGGGGCATATGACACGCGCAGGTGTCACAATGTGATTGCCGCTCGAGGTGCCG
CTGCCGTCATCCCGCCGCGCAAGAATGCGCAGCTGTGGAAGCCAACGACAGTGGGCGCCATCGCGCGAAACGAAGCCGTGAGGGCCTGCAAATATCTCGG
ACGCGCCTTATGGAGAAAATTGACCGGCTACCACCGCCGAAGCCGCGCAGAGACGAAGATGAACTGCGTCAAACTTCTCGGCCAAGGCCTCATGGCGCGA
GACTTCGACCGGCAGGTTGCGGAGCTCCAAGTCCGGATCGCGGTGCTCAATCGCTACACGGCCCTTGGCATACCCATCACAGAGCCCGTAGGATAAGTCC
GTCTGGGGAAGGGGAAGTCCGCTCAAACCCCGATTTGTGCAACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa64996+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSSWSPTRYKTRNWPSYNTALKQRGSLSIWFDPEMSWHALPTGKRGRQPEFSDAAIQICLTMKVLFGMPLRQTTGFVESLLRLAGLDWKVPDFSTLCRRQ
KTLNVAIPYRGGSGPLHLLIDATGIKAEGEGEWNARKHGGSKKRLWRKLHLGMDEETLEIRAVGVTTSNIGDAPMLPDLLDQIPPDQEIATVTADGAYDT
RRCHNVIAARGAAAVIPPRKNAQLWKPTTVGAIARNEAVRACKYLGRALWRKLTGYHRRSRAETKMNCVKLLGQGLMARDFDRQVAELQVRIAVLNRYTA
LGIPITEPVG

 

Blast result :
Comments
ISRusp2 is 89% aa similar to ISRusp1.
References
1] ISfinder annotation (2010)
2] Kjelleberg,S., Case,R., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.